EWM26899.1, cds3770 (CDS) Nannochloropsis gaditana

Overview
NameEWM26899.1
Unique Namecds3770
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:27642..27664 -
Alignment locationCM002462.1:27430..27504 -
Alignment locationCM002462.1:26913..27076 -
Alignment locationCM002462.1:26485..26630 -
Alignment locationCM002462.1:26011..26200 -
Alignment locationCM002462.1:25764..25835 -
Alignment locationCM002462.1:25179..25471 -
Alignment locationCM002462.1:24877..24980 -
Alignment locationCM002462.1:24658..24724 -
Alignment locationCM002462.1:24401..24469 -
Alignment locationCM002462.1:24240..24278 -
Alignment locationCM002462.1:23849..23962 -
Alignment locationCM002462.1:23128..23613 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26899.1
ProductYTH domain protein
Orig transcript idgnl|cribi|Naga_100103g10.7036.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:27642..27664 -
CM002462.1supercontigCM002462.1:27430..27504 -
CM002462.1supercontigCM002462.1:26913..27076 -
CM002462.1supercontigCM002462.1:26485..26630 -
CM002462.1supercontigCM002462.1:26011..26200 -
CM002462.1supercontigCM002462.1:25764..25835 -
CM002462.1supercontigCM002462.1:25179..25471 -
CM002462.1supercontigCM002462.1:24877..24980 -
CM002462.1supercontigCM002462.1:24658..24724 -
CM002462.1supercontigCM002462.1:24401..24469 -
CM002462.1supercontigCM002462.1:24240..24278 -
CM002462.1supercontigCM002462.1:23849..23962 -
CM002462.1supercontigCM002462.1:23128..23613 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR007275YTH_domain
Homology
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|585109029|gb|EWM26899.1| (YTH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1244.57 bits (3219), Expect = 0.000e+0
Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query:    1 MDIRGSTRRLFPDQDLPLIRLQDTTTISLLFLRASFSLPTAPHPYPPLSTEGGREEGGQLSDVPLEQEGGTLSYMWEHMSLDESGQPGPSPYTGYEHGIYPPTFPPSLPPAGPPPPASYLYYYDSPSPGAYGGMPMMYGLDTFSPYQDGYYYLPPSLLPSLPPSTLSPSYPPSSFPAYTPAAASSLPASPSPAGDRGYKGPYPSRRAEGREREGGGRRGGRGRGAAAMGKESIPATAGKEAEEEVMEARIETGVVQISQNDSKEEEPQGGVGFEGKDGEEDEEKEENREQEQEGPQDEEPEKEEEAWKTPPQVLPTGDPVQARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILDGQDILPASFQDHSSTISPAGAPVYAFAAAPHEAQYSSFPGQSFQVIPPQPIASTFHSPPTHGTSSVNGNGYFPTEYPSYQYGNGFSPRHVIVTGENHQPWSSQFSKQQDRTGRYEERGEGRGWGMGHRGNGGTHSNVGARSR 613
            MDIRGSTRRLFPDQDLPLIRLQDTTTISLLFLRASFSLPTAPHPYPPLSTEGGREEGGQLSDVPLEQEGGTLSYMWEHMSLDESGQPGPSPYTGYEHGIYPPTFPPSLPPAGPPPPASYLYYYDSPSPGAYGGMPMMYGLDTFSPYQDGYYYLPPSLLPSLPPSTLSPSYPPSSFPAYTPAAASSLPASPSPAGDRGYKGPYPSRRAEGREREGGGRRGGRGRGAAAMGKESIPATAGKEAEEEVMEARIETGVVQISQNDSKEEEPQGGVGFEGKDGEEDEEKEENREQEQEGPQDEEPEKEEEAWKTPPQVLPTGDPVQARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILDGQDILPASFQDHSSTISPAGAPVYAFAAAPHEAQYSSFPGQSFQVIPPQPIASTFHSPPTHGTSSVNGNGYFPTEYPSYQYGNGFSPRHVIVTGENHQPWSSQFSKQQDRTGRYEERGEGRGWGMGHRGNGGTHSNVGARSR
Sbjct:    1 MDIRGSTRRLFPDQDLPLIRLQDTTTISLLFLRASFSLPTAPHPYPPLSTEGGREEGGQLSDVPLEQEGGTLSYMWEHMSLDESGQPGPSPYTGYEHGIYPPTFPPSLPPAGPPPPASYLYYYDSPSPGAYGGMPMMYGLDTFSPYQDGYYYLPPSLLPSLPPSTLSPSYPPSSFPAYTPAAASSLPASPSPAGDRGYKGPYPSRRAEGREREGGGRRGGRGRGAAAMGKESIPATAGKEAEEEVMEARIETGVVQISQNDSKEEEPQGGVGFEGKDGEEDEEKEENREQEQEGPQDEEPEKEEEAWKTPPQVLPTGDPVQARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILDGQDILPASFQDHSSTISPAGAPVYAFAAAPHEAQYSSFPGQSFQVIPPQPIASTFHSPPTHGTSSVNGNGYFPTEYPSYQYGNGFSPRHVIVTGENHQPWSSQFSKQQDRTGRYEERGEGRGWGMGHRGNGGTHSNVGARSR 613          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|332030573|gb|EGI70261.1| (YTH domain family protein 2 [Acromyrmex echinatior])

HSP 1 Score: 174.096 bits (440), Expect = 1.197e-46
Identity = 84/171 (49.12%), Postives = 114/171 (66.67%), Query Frame = 0
Query:  308 KTPPQVLPTGDPVQ-------ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            +T  QV    +PV+       ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYREA+ +G P+YLFFSVN S  FCG+A M SPVD+ ++   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRD QEVP  +G   L+I++ + + +SI D
Sbjct:    7 QTGNQVKNDYNPVEFDQAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASREGAPLYLFFSVNGSGHFCGMAQMVSPVDYQSNSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIKLENNENKPVTNSRDAQEVPHAKGVTVLRILHTYRHSTSIFD 174          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|443701419|gb|ELT99900.1| (hypothetical protein CAPTEDRAFT_19575 [Capitella teleta])

HSP 1 Score: 170.244 bits (430), Expect = 4.533e-46
Identity = 80/153 (52.29%), Postives = 107/153 (69.93%), Query Frame = 0
Query:  319 PVQARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            P  ARFF+IKS+S  D+ +S+ +S+W STE GN RLD AYRE   +G PV+LFFSVN S  FCG+A M S VD+N S   W +    +W+G F V+W+ VKDVPN+ LRHI L NN+N+P   SRDTQEVP  +G + L+I++ + + +SI D
Sbjct:    3 PKGARFFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYREREGKG-PVFLFFSVNGSGHFCGMAQMMSAVDYNASSSVWAQD---KWKGQFEVKWIYVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKGKQVLRILHQYRHTTSIFD 151          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|307207777|gb|EFN85395.1| (YTH domain family protein 2 [Harpegnathos saltator])

HSP 1 Score: 172.555 bits (436), Expect = 2.320e-45
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0
Query:  322 ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYREA+ +G P+YLFFSVN S  FCG+A M SPVD+  +   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRD QEVP  +G   L+I++ + + +SI D
Sbjct:   84 ARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASREGAPLYLFFSVNGSGHFCGMAQMVSPVDYQCNSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIKLENNENKPVTNSRDAQEVPHVKGVTVLRILHTYRHSTSIFD 230          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|307165841|gb|EFN60204.1| (YTH domain family protein 2 [Camponotus floridanus])

HSP 1 Score: 174.481 bits (441), Expect = 6.080e-45
Identity = 79/150 (52.67%), Postives = 104/150 (69.33%), Query Frame = 0
Query:  322 ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYREA  +G P+YLFFSVN S  FCG+A M SPVD+  +   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRD QEVP  +G   L+I++ + + +SI D
Sbjct:  186 ARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREANREGAPLYLFFSVNGSGHFCGMAQMVSPVDYQCNSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIKLENNENKPVTNSRDAQEVPHAKGVTVLRILHSYRHSTSIFD 332          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|751221309|ref|XP_011163831.1| (PREDICTED: YTH domain-containing family protein 3-like, partial [Solenopsis invicta])

HSP 1 Score: 172.555 bits (436), Expect = 9.179e-45
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0
Query:  322 ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYREA+ +G P+YLFFSVN S  FCG+A M SPVD+  +   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRD QEVP  +G   L+I++ + + +SI D
Sbjct:  127 ARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASREGAPLYLFFSVNGSGHFCGMAQMVSPVDYQCNSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIKLENNENKPVTNSRDAQEVPHAKGVTVLRILHTYRHTTSIFD 273          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|675860110|ref|XP_009015615.1| (hypothetical protein HELRODRAFT_152141, partial [Helobdella robusta] >gi|555703014|gb|ESO06247.1| hypothetical protein HELRODRAFT_152141, partial [Helobdella robusta])

HSP 1 Score: 165.622 bits (418), Expect = 1.123e-44
Identity = 78/149 (52.35%), Postives = 109/149 (73.15%), Query Frame = 0
Query:  323 RFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQGIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            RFFVIKSFS  D+ +S+ +S+W STE GN RLD AYRE   +G  V+L+FSVN S  FCGVA M+SP+D+++S   W +   ++W+G F V+W+ VKDVPN+ LRHI L NN+N+P   SRDTQEVP+ +G + L+I++ + + +SI D
Sbjct:    1 RFFVIKSFSEDDIHRSIKYSIWCSTEYGNKRLDAAYREREGKG-QVFLYFSVNGSGHFCGVAQMTSPIDYSSSSEVWAQ---NKWKGQFTVKWIYVKDVPNSQLRHIKLENNENKPVTNSRDTQEVPYEKGKQVLRIIHQYRHTTSIFD 145          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|939664758|ref|XP_014279834.1| (PREDICTED: YTH domain-containing family protein 3 isoform X3 [Halyomorpha halys])

HSP 1 Score: 175.252 bits (443), Expect = 2.089e-44
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = 0
Query:  322 ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQ--GIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYRE   +  G+ VYLFFSVN S  FCG+A M+SPVD+N S   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRDTQEVPF +G + L++M+ + + +SI D
Sbjct:  306 ARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREQESKPNGV-VYLFFSVNGSGHFCGMARMTSPVDYNASSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIRLENNENKPVTNSRDTQEVPFEKGKQVLRVMHSYRHTTSIFD 453          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|939664752|ref|XP_014279832.1| (PREDICTED: YTH domain-containing family protein 3 isoform X1 [Halyomorpha halys])

HSP 1 Score: 176.022 bits (445), Expect = 3.013e-44
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = 0
Query:  322 ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQ--GIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYRE   +  G+ VYLFFSVN S  FCG+A M+SPVD+N S   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRDTQEVPF +G + L++M+ + + +SI D
Sbjct:  355 ARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREQESKPNGV-VYLFFSVNGSGHFCGMARMTSPVDYNASSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIRLENNENKPVTNSRDTQEVPFEKGKQVLRVMHSYRHTTSIFD 502          
BLAST of EWM26899.1 vs. NCBI_GenBank
Match: gi|939664754|ref|XP_014279833.1| (PREDICTED: YTH domain-containing family protein 3 isoform X2 [Halyomorpha halys])

HSP 1 Score: 175.637 bits (444), Expect = 3.498e-44
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = 0
Query:  322 ARFFVIKSFSPTDVVQSVHHSLWASTEPGNARLDRAYREAAVQ--GIPVYLFFSVNESRRFCGVALMSSPVDFNTSFPAWMKTQTHRWRGVFNVRWLLVKDVPNAALRHITLANNQNRPFPRSRDTQEVPFNEGNEALQIMNDHAYYSSILD 471
            ARFFVIKS+S  D+ +S+ + +W STE GN RLD+AYRE   +  G+ VYLFFSVN S  FCG+A M+SPVD+N S   W +    +W+G F VRW+ VKDVPN  LRHI L NN+N+P   SRDTQEVPF +G + L++M+ + + +SI D
Sbjct:  355 ARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREQESKPNGV-VYLFFSVNGSGHFCGMARMTSPVDYNASSSVWSQD---KWKGQFRVRWIYVKDVPNVQLRHIRLENNENKPVTNSRDTQEVPFEKGKQVLRVMHSYRHTTSIFD 502          
The following BLAST results are available for this feature:
BLAST of EWM26899.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109029|gb|EWM26899.1|0.000e+0100.00YTH domain protein [Nannochloropsis gaditana][more]
gi|332030573|gb|EGI70261.1|1.197e-4649.12YTH domain family protein 2 [Acromyrmex echinatior... [more]
gi|443701419|gb|ELT99900.1|4.533e-4652.29hypothetical protein CAPTEDRAFT_19575 [Capitella t... [more]
gi|307207777|gb|EFN85395.1|2.320e-4552.67YTH domain family protein 2 [Harpegnathos saltator... [more]
gi|307165841|gb|EFN60204.1|6.080e-4552.67YTH domain family protein 2 [Camponotus floridanus... [more]
gi|751221309|ref|XP_011163831.1|9.179e-4552.67PREDICTED: YTH domain-containing family protein 3-... [more]
gi|675860110|ref|XP_009015615.1|1.123e-4452.35hypothetical protein HELRODRAFT_152141, partial [H... [more]
gi|939664758|ref|XP_014279834.1|2.089e-4453.95PREDICTED: YTH domain-containing family protein 3 ... [more]
gi|939664752|ref|XP_014279832.1|3.013e-4453.95PREDICTED: YTH domain-containing family protein 3 ... [more]
gi|939664754|ref|XP_014279833.1|3.498e-4453.95PREDICTED: YTH domain-containing family protein 3 ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3779rna3779Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications