EWM26903.1, cds3768 (CDS) Nannochloropsis gaditana

Overview
NameEWM26903.1
Unique Namecds3768
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:19595..20164 +
Alignment locationCM002462.1:20279..20398 +
Alignment locationCM002462.1:20525..20623 +
Alignment locationCM002462.1:20812..20967 +
Alignment locationCM002462.1:21252..21399 +
Alignment locationCM002462.1:21535..21581 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26903.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100103g11.7040.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:19595..20164 +
CM002462.1supercontigCM002462.1:20279..20398 +
CM002462.1supercontigCM002462.1:20525..20623 +
CM002462.1supercontigCM002462.1:20812..20967 +
CM002462.1supercontigCM002462.1:21252..21399 +
CM002462.1supercontigCM002462.1:21535..21581 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|585109033|gb|EWM26903.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 775.778 bits (2002), Expect = 0.000e+0
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0
Query:    1 MYPPLTGNFMRSRDSILPPLSSLTDSEINADMSESKVFEGEGGSNEGLPVNEDSKNKGGRKKTEKKHKDVQQEDLEKGEDRRDSKEDTKLYNLTEKGTSCVSPSTPTCRRFRPWGRLKAHSWPAMLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDILLSDCYGRFTR 379
            MYPPLTGNFMRSRDSILPPLSSLTDSEINADMSESKVFEGEGGSNEGLPVNEDSKNKGGRKKTEKKHKDVQQEDLEKGEDRRDSKEDTKLYNLTEKGTSCVSPSTPTCRRFRPWGRLKAHSWPAMLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDILLSDCYGRFTR
Sbjct:    1 MYPPLTGNFMRSRDSILPPLSSLTDSEINADMSESKVFEGEGGSNEGLPVNEDSKNKGGRKKTEKKHKDVQQEDLEKGEDRRDSKEDTKLYNLTEKGTSCVSPSTPTCRRFRPWGRLKAHSWPAMLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDILLSDCYGRFTR 379          
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|553181303|ref|XP_005853541.1| (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >gi|422295521|gb|EKU22820.1| hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 676.396 bits (1744), Expect = 0.000e+0
Identity = 347/411 (84.43%), Postives = 347/411 (84.43%), Query Frame = 0
Query:   32 MSESKVFEGEGGSNEGLPVNEDSKNKGGRKKTEKKHKDVQQEDLEKGEDRRDSKEDTKLYNLTEKGTSCVSPSTPTCRRFRPWGRLKAHSWPAMLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSIL-----------------------------------VHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE----------------------------GGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDILLSDCYGRFTR 379
            MSESKVFEGEGGSNEGLPVNEDSKNKGGRKKTEKKHKDVQQEDLEKGEDRRDSKEDTKLYNLTEKGTSCVSPSTPTCRRFR WGRLKAHSWPAMLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSIL                                   VHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE                            GGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDILLSDCYGRFTR
Sbjct:    1 MSESKVFEGEGGSNEGLPVNEDSKNKGGRKKTEKKHKDVQQEDLEKGEDRRDSKEDTKLYNLTEKGTSCVSPSTPTCRRFRLWGRLKAHSWPAMLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEKSFGLSFRIDGEGRRVDVRFSYLSHPSQGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDILLSDCYGRFTR 411          
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|585109034|gb|EWM26904.1| (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 380.948 bits (977), Expect = 3.441e-130
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:  125 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 315
            MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE
Sbjct:    1 MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191          
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|553181298|ref|XP_005853540.1| (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >gi|422295520|gb|EKU22819.1| hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.443 bits (376), Expect = 1.386e-38
Identity = 91/234 (38.89%), Postives = 143/234 (61.11%), Query Frame = 0
Query:  151 VEEKEGTE-EPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDIL-LSDCYGRFTR 379
            V   +G + +P      I L+SS+HS V ++V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+GG     AVL G     YT + +++TV  LG +   R + +ECTVL+ WG++ L LSDCYGRF +
Sbjct:   74 VSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGENPLTLSDCYGRFYK 307          
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|585112577|gb|EWM29974.1| (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 109.383 bits (272), Expect = 2.147e-23
Identity = 75/228 (32.89%), Postives = 121/228 (53.07%), Query Frame = 0
Query:  164 SPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLP--LPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPG----SLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWG--------KDILLSDCYGRF 377
            +PS S   S+HS    ++  I + L+ +P+WKYR + +S+++ +I   LLL VS+VYGFG+   H+ V     + P  +  +G+ P+R+ + ++NPN F I    +++ V S+  R+ G    + L  + +P   LHAR       + FV+  L +   G  +  AVL G  TF    A   L V +LGF+ I R + ++C+V   WG        KD  +SDC+G F
Sbjct:  108 APSFSTTQSVHS----VMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEV-VLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDT-VSDCFGAF 329          
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|585109030|gb|EWM26900.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 100.138 bits (248), Expect = 3.466e-20
Identity = 65/170 (38.24%), Postives = 104/170 (61.18%), Query Frame = 0
Query:  159 EPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVL 325
            +P      I L+SS+HS V ++V  + ++L+ MPKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+GG     AVL
Sbjct:   83 KPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVL 252          
BLAST of EWM26903.1 vs. NCBI_GenBank
Match: gi|585109031|gb|EWM26901.1| (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 85.5001 bits (210), Expect = 1.047e-15
Identity = 54/140 (38.57%), Postives = 85/140 (60.71%), Query Frame = 0
Query:  189 YQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVL 325
            +  PKW+YRL++ ++++L +S +L+L VSV+YGF M+LPHI V  V + LP P     G +P+ S +  +NPN F      + I +Y+ P+RSP SLL ++      L   E  ++ +  F ++D+GSI+GG     AVL
Sbjct:   21 FHRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVL 160          
The following BLAST results are available for this feature:
BLAST of EWM26903.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109033|gb|EWM26903.1|0.000e+0100.00hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|553181303|ref|XP_005853541.1|0.000e+084.43hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
gi|585109034|gb|EWM26904.1|3.441e-130100.00hypothetical protein Naga_100103g11 [Nannochlorops... [more]
gi|553181298|ref|XP_005853540.1|1.386e-3838.89hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
gi|585112577|gb|EWM29974.1|2.147e-2332.89hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
gi|585109030|gb|EWM26900.1|3.466e-2038.24hypothetical protein Naga_100103g12 [Nannochlorops... [more]
gi|585109031|gb|EWM26901.1|1.047e-1538.57hypothetical protein Naga_100103g12 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3777rna3777Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications