EWM26896.1, cds3762 (CDS) Nannochloropsis gaditana

Overview
NameEWM26896.1
Unique Namecds3762
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:9717..10349 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26896.1
Productmitochondrial substrate carrier family protein b
Orig transcript idgnl|cribi|Naga_100103g16.7033.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:9717..10349 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042221response to chemical
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
IPR002067Mit_carrier
Homology
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|585109026|gb|EWM26896.1| (mitochondrial substrate carrier family protein b [Nannochloropsis gaditana])

HSP 1 Score: 419.083 bits (1076), Expect = 4.063e-148
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MLAGGLAGVAANLLFHPLDTLRARITAQTASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPLALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAVREGGGLRGLYRGYPVVLLKVLPTTVVSYRVSSGVTQWLEESA 210
            MLAGGLAGVAANLLFHPLDTLRARITAQTASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPLALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAVREGGGLRGLYRGYPVVLLKVLPTTVVSYRVSSGVTQWLEESA
Sbjct:    1 MLAGGLAGVAANLLFHPLDTLRARITAQTASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPLALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAVREGGGLRGLYRGYPVVLLKVLPTTVVSYRVSSGVTQWLEESA 210          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|953493856|emb|CEG44240.1| (mitochondrial carrier family [Plasmopara halstedii])

HSP 1 Score: 120.939 bits (302), Expect = 3.695e-28
Identity = 76/203 (37.44%), Postives = 109/203 (53.69%), Query Frame = 0
Query:    1 MLAGGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPLALHRH-RHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMA-VREGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
             + GG AG+  N L +PLD +R R+TAQ    ++RPY  G+      I   EG R F+RG  P ++  F YIG NY     L P+ +H     +S+ L  P+ P            IL    A  V+Q I+YPFD++RRR+QL   +G K   +  F+S    W   + + V EGG LRG   LYRG+ + ++K LP+TV+S+
Sbjct:  414 FVMGGFAGLTLNCLLYPLDVIRGRLTAQEYYNANRPYT-GILHCARSIRDHEGLRGFYRGFGPASLGVFTYIGCNYALYESLRPVFVHYDVEDTSIQLGHPSVP----------GQILCATTASLVSQCISYPFDVIRRRIQL---QGTKWHPELAFSSYKGAWHCVRASVVDEGGALRGMRSLYRGFVINVVKALPSTVISF 602          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|953486711|emb|CEG48773.1| (mitochondrial carrier family [Plasmopara halstedii])

HSP 1 Score: 120.553 bits (301), Expect = 6.606e-28
Identity = 76/203 (37.44%), Postives = 109/203 (53.69%), Query Frame = 0
Query:    1 MLAGGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPLALHRH-RHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMA-VREGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
             + GG AG+  N L +PLD +R R+TAQ    ++RPY  G+      I   EG R F+RG  P ++  F YIG NY     L P+ +H     +S+ L  P+ P            IL    A  V+Q I+YPFD++RRR+QL   +G K   +  F+S    W   + + V EGG LRG   LYRG+ + ++K LP+TV+S+
Sbjct: 1034 FVMGGFAGLTLNCLLYPLDVIRGRLTAQEYYNANRPYT-GILHCARSIRDHEGLRGFYRGFGPASLGVFTYIGCNYALYESLRPVFVHYDVEDTSIQLGHPSVP----------GQILCATTASLVSQCISYPFDVIRRRIQL---QGTKWHPELAFSSYKGAWHCVRASVVDEGGALRGMRSLYRGFVINVVKALPSTVISF 1222          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|301107492|ref|XP_002902828.1| (Mitochondrial Carrier (MC) Family [Phytophthora infestans T30-4] >gi|262097946|gb|EEY55998.1| Mitochondrial Carrier (MC) Family [Phytophthora infestans T30-4])

HSP 1 Score: 111.694 bits (278), Expect = 9.479e-25
Identity = 74/200 (37.00%), Postives = 105/200 (52.50%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMA-VREGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+      I   EG R F+RG  P ++  F YIG N+     L P+  L+    +S  L  P+ P            I+    A   +Q I+YPFD++RRR+QL   +G K   +  F +  S W   + + V EGGG+RG   LYRG  V  +K LP+TV+S+
Sbjct: 1083 GGLAGLTLNSLFYPLDVIRGRLTVQQYYNANRP-SSGILNCARSIRDKEGLRGFYRGFVPASLGVFTYIGCNFALYESLRPVFVLYDTEDTSNQLGHPSVP----------GQIMCATTASLASQCISYPFDVIRRRVQL---QGAKWHPELAFPTYESAWHCVRASVVEEGGGIRGLRSLYRGLFVNAVKALPSTVISF 1268          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|568003964|gb|ETL78301.1| (hypothetical protein L917_20856 [Phytophthora parasitica] >gi|568033870|gb|ETM31562.1| hypothetical protein L914_20869 [Phytophthora parasitica])

HSP 1 Score: 109.383 bits (272), Expect = 5.299e-24
Identity = 74/200 (37.00%), Postives = 104/200 (52.00%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAV-REGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+      I   EG R F+RG    ++  F YIG N+     L P+  L+    +S  L  P+ P            IL    A   +Q I+YPFD++RRR+QL   +G K   +  F +  S W   + +V  EGGG+RG   LYRG  V  +K LP+TV+S+
Sbjct: 1088 GGLAGLTLNCLFYPLDVIRGRLTVQQYYNANRP-SSGILNCARSISDKEGLRGFYRGFVSASLGVFTYIGCNFALYESLRPVFVLYDTEDTSNQLGHPSVP----------GQILCATTASLASQCISYPFDVIRRRVQL---QGAKWHPELAFPTYESAWHCVRASVAEEGGGVRGLRSLYRGLFVNAVKALPSTVISF 1273          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|675179441|ref|XP_008898605.1| (hypothetical protein PPTG_06437 [Phytophthora parasitica INRA-310] >gi|568101574|gb|ETN16260.1| hypothetical protein PPTG_06437 [Phytophthora parasitica INRA-310] >gi|570966092|gb|ETP29211.1| hypothetical protein F442_21584 [Phytophthora parasitica P10297] >gi|970627888|gb|KUF75697.1| Calcium-binding mitochondrial carrier protein SCaMC-1 [Phytophthora nicotianae] >gi|970662205|gb|KUF99614.1| hypothetical protein AM588_10009862 [Phytophthora nicotianae])

HSP 1 Score: 109.383 bits (272), Expect = 5.507e-24
Identity = 74/200 (37.00%), Postives = 104/200 (52.00%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAV-REGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+      I   EG R F+RG    ++  F YIG N+     L P+  L+    +S  L  P+ P            IL    A   +Q I+YPFD++RRR+QL   +G K   +  F +  S W   + +V  EGGG+RG   LYRG  V  +K LP+TV+S+
Sbjct: 1088 GGLAGLTLNCLFYPLDVIRGRLTVQQYYNANRP-SSGILNCARSISDKEGLRGFYRGFVSASLGVFTYIGCNFALYESLRPVFVLYDTEDTSNQLGHPSVP----------GQILCATTASLASQCISYPFDVIRRRVQL---QGAKWHPELAFPTYESAWHCVRASVAEEGGGVRGLRSLYRGLFVNAVKALPSTVISF 1273          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|566008324|gb|ETI31235.1| (hypothetical protein F443_21723 [Phytophthora parasitica P1569] >gi|567945838|gb|ETK71649.1| hypothetical protein L915_21123 [Phytophthora parasitica] >gi|570312019|gb|ETO59967.1| hypothetical protein F444_21752 [Phytophthora parasitica P1976])

HSP 1 Score: 109.383 bits (272), Expect = 5.668e-24
Identity = 74/200 (37.00%), Postives = 104/200 (52.00%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAV-REGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+      I   EG R F+RG    ++  F YIG N+     L P+  L+    +S  L  P+ P            IL    A   +Q I+YPFD++RRR+QL   +G K   +  F +  S W   + +V  EGGG+RG   LYRG  V  +K LP+TV+S+
Sbjct: 1088 GGLAGLTLNCLFYPLDVIRGRLTVQQYYNANRP-SSGILNCARSISDKEGLRGFYRGFVSASLGVFTYIGCNFALYESLRPVFVLYDTEDTSNQLGHPSVP----------GQILCATTASLASQCISYPFDVIRRRVQL---QGAKWHPELAFPTYESAWHCVRASVAEEGGGVRGLRSLYRGLFVNAVKALPSTVISF 1273          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|567974520|gb|ETL25111.1| (hypothetical protein L916_20999 [Phytophthora parasitica] >gi|570935809|gb|ETP01066.1| hypothetical protein F441_21610 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 109.383 bits (272), Expect = 5.890e-24
Identity = 74/200 (37.00%), Postives = 104/200 (52.00%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAV-REGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+      I   EG R F+RG    ++  F YIG N+     L P+  L+    +S  L  P+ P            IL    A   +Q I+YPFD++RRR+QL   +G K   +  F +  S W   + +V  EGGG+RG   LYRG  V  +K LP+TV+S+
Sbjct: 1088 GGLAGLTLNCLFYPLDVIRGRLTVQQYYNANRP-SSGILNCARSISDKEGLRGFYRGFVSASLGVFTYIGCNFALYESLRPVFVLYDTEDTSNQLGHPSVP----------GQILCATTASLASQCISYPFDVIRRRVQL---QGAKWHPELAFPTYESAWHCVRASVAEEGGGVRGLRSLYRGLFVNAVKALPSTVISF 1273          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|695443390|ref|XP_009533690.1| (hypothetical protein PHYSODRAFT_337707 [Phytophthora sojae] >gi|348671124|gb|EGZ10945.1| hypothetical protein PHYSODRAFT_337707 [Phytophthora sojae])

HSP 1 Score: 107.071 bits (266), Expect = 3.048e-23
Identity = 71/200 (35.50%), Postives = 102/200 (51.00%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAVREGG----GLRGLYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+      I   EG R F+RG  P ++  F YIG N+       P+  L+    +S  L  P+ P            IL    A   +Q I+YPFD++RRR+QL   +G K   +  F +    W   + +++E G    GLR LYRG  V  +K LP+TV+S+
Sbjct: 1091 GGLAGLTLNSLFYPLDVVRGRLTVQQYYNANRP-STGILDCARSIRDKEGLRGFYRGFVPASLGVFTYIGCNFALYESFRPVFVLYDTEDTSNQLGHPSVP----------GQILCATTASLGSQCISYPFDVIRRRVQL---QGAKWHPELAFPTYEGAWDCVRSSIQEEGGGVRGLRSLYRGLFVNAVKALPSTVISF 1276          
BLAST of EWM26896.1 vs. NCBI_GenBank
Match: gi|1214708962|gb|OWZ20188.1| (Mitochondrial Carrier (MC) protein [Phytophthora megakarya])

HSP 1 Score: 105.531 bits (262), Expect = 1.244e-22
Identity = 72/200 (36.00%), Postives = 105/200 (52.50%), Query Frame = 0
Query:    4 GGLAGVAANLLFHPLDTLRARITAQT--ASSRPYPEGVWQATLHIWKLEGPRAFWRGATPCAVWAFLYIGINYTCLAFLAPL-ALHRHRHSSLPLARPTDPLSAPSSPPPSSAILSVLAAGAVAQSIAYPFDLLRRRMQLGWGEGLKLERKGIFTSLSSLWGQAQMAV-REGGGLRG---LYRGYPVVLLKVLPTTVVSY 196
            GGLAG+  N LF+PLD +R R+T Q    ++RP   G+ +    I   EG + F+RG  P ++    YIG N+     L P+  L+    +S  L  P+ P            IL    A   +Q I+YPFD++RRR+QL   +G K   +  F +  S W   + ++  EGGG+RG   LYRG  V  +K LP+TV+S+
Sbjct:  874 GGLAGLTLNCLFYPLDVIRGRLTVQQYYNANRP-SSGMLKCARLIRDKEGFQGFYRGFMPASLGVSTYIGCNFALYESLRPVFVLYDTEDTSNQLGHPSVP----------GQILCATTASLASQCISYPFDVIRRRVQL---QGAKWHPELAFPTYDSAWDCVRSSIAEEGGGVRGLRSLYRGLFVNAVKALPSTVISF 1059          
The following BLAST results are available for this feature:
BLAST of EWM26896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109026|gb|EWM26896.1|4.063e-148100.00mitochondrial substrate carrier family protein b [... [more]
gi|953493856|emb|CEG44240.1|3.695e-2837.44mitochondrial carrier family [Plasmopara halstedii... [more]
gi|953486711|emb|CEG48773.1|6.606e-2837.44mitochondrial carrier family [Plasmopara halstedii... [more]
gi|301107492|ref|XP_002902828.1|9.479e-2537.00Mitochondrial Carrier (MC) Family [Phytophthora in... [more]
gi|568003964|gb|ETL78301.1|5.299e-2437.00hypothetical protein L917_20856 [Phytophthora para... [more]
gi|675179441|ref|XP_008898605.1|5.507e-2437.00hypothetical protein PPTG_06437 [Phytophthora para... [more]
gi|566008324|gb|ETI31235.1|5.668e-2437.00hypothetical protein F443_21723 [Phytophthora para... [more]
gi|567974520|gb|ETL25111.1|5.890e-2437.00hypothetical protein L916_20999 [Phytophthora para... [more]
gi|695443390|ref|XP_009533690.1|3.048e-2335.50hypothetical protein PHYSODRAFT_337707 [Phytophtho... [more]
gi|1214708962|gb|OWZ20188.1|1.244e-2236.00Mitochondrial Carrier (MC) protein [Phytophthora m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3771rna3771Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications