EWM26918.1, cds3754 (CDS) Nannochloropsis gaditana

Overview
NameEWM26918.1
Unique Namecds3754
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1167251..1167459 -
Alignment locationCM002461.1:1167041..1167147 -
Alignment locationCM002461.1:1166669..1166951 -
Alignment locationCM002461.1:1166428..1166571 -
Alignment locationCM002461.1:1166092..1166227 -
Alignment locationCM002461.1:1165794..1165905 -
Alignment locationCM002461.1:1165568..1165634 -
Alignment locationCM002461.1:1165259..1165422 -
Alignment locationCM002461.1:1165008..1165115 -
Alignment locationCM002461.1:1164737..1164912 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26918.1
ProductSTART-like domain protein
Orig transcript idgnl|cribi|Naga_100284g2.701.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1167251..1167459 -
CM002461.1supercontigCM002461.1:1167041..1167147 -
CM002461.1supercontigCM002461.1:1166669..1166951 -
CM002461.1supercontigCM002461.1:1166428..1166571 -
CM002461.1supercontigCM002461.1:1166092..1166227 -
CM002461.1supercontigCM002461.1:1165794..1165905 -
CM002461.1supercontigCM002461.1:1165568..1165634 -
CM002461.1supercontigCM002461.1:1165259..1165422 -
CM002461.1supercontigCM002461.1:1165008..1165115 -
CM002461.1supercontigCM002461.1:1164737..1164912 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
IPR005031Polyket_cyc
Homology
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|585109050|gb|EWM26918.1| (START-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1030.39 bits (2663), Expect = 0.000e+0
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0
Query:    1 MAPALELHQAHRMYRNQGKRDSEAYPPSSRELVLKLQGEGSISSPIPSSVPRRACTGCAHSCLSRQRHYREALLKKAAQPLGCVCKSDTLCHKRSKSSMNSSARAAPSVFFAAAATFVCCCSLASATYTSESSSFFYPSLPSSALAAFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYIGDLQGGGGGGVDSKGVLRVGVGSGGSSGGREGGRGVNSRAWSPYSYQKGRNETESGSMLDRLFFR 501
            MAPALELHQAHRMYRNQGKRDSEAYPPSSRELVLKLQGEGSISSPIPSSVPRRACTGCAHSCLSRQRHYREALLKKAAQPLGCVCKSDTLCHKRSKSSMNSSARAAPSVFFAAAATFVCCCSLASATYTSESSSFFYPSLPSSALAAFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYIGDLQGGGGGGVDSKGVLRVGVGSGGSSGGREGGRGVNSRAWSPYSYQKGRNETESGSMLDRLFFR
Sbjct:    1 MAPALELHQAHRMYRNQGKRDSEAYPPSSRELVLKLQGEGSISSPIPSSVPRRACTGCAHSCLSRQRHYREALLKKAAQPLGCVCKSDTLCHKRSKSSMNSSARAAPSVFFAAAATFVCCCSLASATYTSESSSFFYPSLPSSALAAFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYIGDLQGGGGGGVDSKGVLRVGVGSGGSSGGREGGRGVNSRAWSPYSYQKGRNETESGSMLDRLFFR 501          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|553191672|ref|XP_005855430.1| (hypothetical protein NGA_0121600 [Nannochloropsis gaditana CCMP526] >gi|422293637|gb|EKU20937.1| hypothetical protein NGA_0121600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MAPALELHQAHRMYRNQGKRDSEAYPPSSRELVLKLQGEGSISSPIPSSVPRRACTGCAHSCLSRQRHYREALLKKAAQPLGCVCKSDTLCHKRSKSSMNSSARAAPSVFFAAAATFVCCCSLASATYTSESSSFFYPSLPSSALAAFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFK 293
            MAPALELHQAHRMYRNQGKRDSEAYPPSSRELVLKLQGEGSISSPIPSSVPRRACTGCAHSCLSRQRHYREALLKKAAQPLGCVCKSDTLCHKRSKSSMNSSARAAPSVFFAAAATFVCCCSLASATYTSESSSFFYPSLPSSALAAFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFK
Sbjct:    1 MAPALELHQAHRMYRNQGKRDSEAYPPSSRELVLKLQGEGSISSPIPSSVPRRACTGCAHSCLSRQRHYREALLKKAAQPLGCVCKSDTLCHKRSKSSMNSSARAAPSVFFAAAATFVCCCSLASATYTSESSSFFYPSLPSSALAAFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFK 293          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|873218209|emb|CEM39765.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 218.394 bits (555), Expect = 1.965e-62
Identity = 124/293 (42.32%), Postives = 172/293 (58.70%), Query Frame = 0
Query:  163 RVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKE----VRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRM---RTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQAR------------MTVAQDWMSDETLGAYI 436
            RVL +  +P++   SV         R  ++ +  + FR R   +  E+ V VNIE P+ANVRRIS S++V+  + D W ILTDY+NL+ +VPNL  S+ V  P    + G N +    +RL+QEGAQ I+GF+F+A++TMDM EV    + ++  R I+F+L DS  FS F GEW++Q ++R      A  ++E +Y+TKLFY+V V+PKGPVPV ALEWRIKEDVPTNL+AVK A+EK+          L     G  +   R              V Q    DETLG Y+
Sbjct:  102 RVLRAPLAPASVGPSVDEEMG----RGDAVRLGLTTFRRRAMLDT-EDSVSVNIERPAANVRRISGSVIVDTSMEDCWSILTDYDNLAAHVPNLVVSQRVPLPRSLASSGLNGDDMWQMRLYQEGAQKIIGFDFRAAVTMDMREVLGDPENRMAPRLIEFKLADSQFFSQFDGEWKIQAHTRRVRRHPATGDDEISYTTKLFYVVTVRPKGPVPVMALEWRIKEDVPTNLKAVKQAAEKIARKVPASSPLLLRADEGETQTWRREGEGEGEDDDDMDEVDQGVQEDETLGVYM 389          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|298715255|emb|CBJ27904.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 198.749 bits (504), Expect = 1.485e-56
Identity = 98/185 (52.97%), Postives = 129/185 (69.73%), Query Frame = 0
Query:  201 WRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMR-TACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTN 384
            W GG+     EV VNIE  S N RRIS SIVVNRP+ DVW  LTDY+ L++YVPNLTQS++  +  G         +RL+QEGAQ IVGF+F+AS+ M MEE F   + ++ QR++ F L+DS MF++F GEWR+Q  SR +    +  E+ Y+TKLFYMV+++PKGPVPV ALEW+I  +VP N
Sbjct:    3 WSGGRRTQGNEVTVNIERTSRNSRRISGSIVVNRPIEDVWLTLTDYDRLAKYVPNLTQSKVRPSNDG--------GIRLWQEGAQKIVGFDFRASVEMFMEEHFGDPENRMAQRKLTFGLLDSRMFNEFDGEWRMQFNSRKQFNTAQGPEYQYTTKLFYMVHIRPKGPVPVLALEWQISNEVPNN 179          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|922856801|gb|KOO25119.1| (cyclase dehydrase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 193.741 bits (491), Expect = 1.137e-55
Identity = 102/184 (55.43%), Postives = 127/184 (69.02%), Query Frame = 0
Query:  212 VLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKL 395
            V+V+I +   N R IS+S++ +   S VW ILTDY+NL+ +VPNL QSR    P G         +RLFQEGAQ IVGF+F+ASLTMDM EV   E+  L   RI F LV+SAMF+ F GEWR+Q YSR+R+  +  ++ Y +KL Y VN+ PKG VPV ALEWRI+EDVP NL AVK ASEKL
Sbjct:   16 VVVDILTTGINSRCISASVIADAAPSKVWAILTDYDNLATHVPNLIQSRRRPHPTG--------GIRLFQEGAQKIVGFDFRASLTMDMTEV--TEEGALRPSRILFELVESAMFASFDGEWRVQPYSRVRSLADPSKYEYKSKLSYRVNITPKGLVPVPALEWRIREDVPVNLLAVKAASEKL 189          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|553191675|ref|XP_005855431.1| (hypothetical protein NGA_0121700 [Nannochloropsis gaditana CCMP526] >gi|422293638|gb|EKU20938.1| hypothetical protein NGA_0121700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.504 bits (480), Expect = 4.925e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
Query:  354 TKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYIGDLQGGG 443
            TKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYIGDLQGGG
Sbjct:    5 TKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYIGDLQGGG 94          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|1210519789|dbj|GAX21341.1| (hypothetical protein FisN_6Lh094 [Fistulifera solaris])

HSP 1 Score: 175.637 bits (444), Expect = 1.573e-47
Identity = 107/237 (45.15%), Postives = 142/237 (59.92%), Query Frame = 0
Query:  212 VLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVK----VASEKLPWDCEQDQAALAALAAGRREQQAR------MTVAQDWMSDETLGAYIGD 438
            V V IE PS + RRI   I+   PL+DVW ILT Y++LS +VPNL +SR+   PP  +    + E  LFQ+GAQ IVGF F AS+TM M+E + +E E    RRI F+ VDS  F+ F GEW+ +   R+      E     TKL Y+V+V+PKGPVPV ALEWRI+EDVPTNLRAVK    + SEK     +Q  +  +A +  +R    R      M ++  W  DET+ AY+ +
Sbjct:   68 VPVRIERPSPSSRRIFGEIIAPVPLADVWSILTAYDDLSTHVPNLKESRITRRPPSGQPGDGSYECILFQKGAQKIVGFEFAASVTMKMKERYISESE----RRITFQCVDSMFFNAFDGEWKAE--ERIGADGMPE-----TKLSYVVDVRPKGPVPVAALEWRIREDVPTNLRAVKRSAALLSEKS--QVQQTLSRPSAPSVNKRATSTRAQLMNNMKMSVKWYKDETMEAYLTE 291          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|1210515156|dbj|GAX25868.1| (hypothetical protein FisN_6Hh094 [Fistulifera solaris])

HSP 1 Score: 171.4 bits (433), Expect = 6.095e-46
Identity = 102/236 (43.22%), Postives = 137/236 (58.05%), Query Frame = 0
Query:  212 VLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQA---------RMTVAQDWMSDETLGAYIGD 438
            V V IE PS + RRI   I+   PL+DVW ILT Y++LS +VPNL +SR+   PP  +    + E  LFQ+GAQ IVGF F AS+TM M+E + +  E    R+I F+ VDS  F+ F GEW+    +  R + +       TKL Y+V+V+PKGPVPV ALEWRI+EDVPTNLRAVK ++  L    +  Q      A     Q+A          M ++  W  DET+ AY+ +
Sbjct:   68 VPVRIERPSPSSRRIFGEIIAPVPLADVWSILTAYDDLSTHVPNLKESRITRRPPSGQPGDGSFECILFQKGAQKIVGFEFAASVTMKMKESYISASE----RKITFQCVDSMFFNAFDGEWK----AEERVSADGMP---ETKLSYVVDVRPKGPVPVAALEWRIREDVPTNLRAVKRSAALLSEQSQMPQTRSRPSAPSVNNQRASSTRARLMNDMKMSVKWYKDETMEAYLTE 292          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|219122765|ref|XP_002181710.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406986|gb|EEC46924.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 169.474 bits (428), Expect = 8.627e-45
Identity = 118/316 (37.34%), Postives = 156/316 (49.37%), Query Frame = 0
Query:  147 AFLPSSLPPAAPRRRRRVLSSSSSPSAFSNSVFARQSAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKL------------------GQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWD----CEQDQAALAALAAGRREQQARMTVAQD----WMSDETLGAYI 436
            AFL   L  +A R  R   S+  SP++ +   F    A S++T                ++  E V V IE  S N R+I   IV   PL DVW ILTDY+ LS +VPNL +SR+V    G E    N + RLFQ+GAQ IVGF F A LTM+M+E  +     L                   +RRI+F+  +S  F +F GEW++       T    E     T L Y V+V+P GPVPV ALEWRI+EDVPTNLRAVK+A+  + +       Q     A+     R   AR  +  D    W  +ET+ AY+
Sbjct:   27 AFLTGGLQSSAIRHSRLDRSAFYSPTSLNIWWFG--GAESEQTAQ-------------GDDSCELVPVRIERTSGNSRKIYGEIVAPVPLKDVWAILTDYDRLSTHVPNLVESRIVRPLSGGEMGDGNFQCRLFQKGAQKIVGFEFGADLTMEMKESIKPAPTILPSKPDATRQDANGASYPGNERRIQFKCCESFFFKEFDGEWKV-------TERTGETGLMETVLSYTVDVRPNGPVPVAALEWRIREDVPTNLRAVKLAAMTVGYKGVQASRQQGMQPASFGKSYRRNGARPGLIADLRVQWEPEETMAAYL 320          
BLAST of EWM26918.1 vs. NCBI_GenBank
Match: gi|397615186|gb|EJK63276.1| (hypothetical protein THAOC_16079 [Thalassiosira oceanica])

HSP 1 Score: 169.859 bits (429), Expect = 8.637e-45
Identity = 111/251 (44.22%), Postives = 139/251 (55.38%), Query Frame = 0
Query:  212 VLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEE-VFEA---------EDEKL--GQRRIKFRLVDSAMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQ-------AALAALAAGRREQQARMTVAQDWMSD-------ETLGAYI 436
            V V I+  SAN RRI   IVVN  L DVW ILTDY+ LS +VPNL  S+ V+   G    G  K  RL+Q GAQ I+GF F A +TMDM E V +A          D KL   +RRI F+ VDS  FS+F G WR+          E E     T + Y V V+PKGPVPV ALEWRI+EDVPTNLRAVK A+ ++ ++  Q +        ALA L     E+    + + +  +D       ETLGAY+
Sbjct:   85 VAVRIDRTSANSRRIGGEIVVNASLLDVWSILTDYDRLSTHVPNLVASKRVSGGSGEPGDGSYK-CRLYQRGAQKIIGFQFGADVTMDMTEAVVDAGKASGQPAGADSKLFPQERRIDFKCVDSQFFSEFDGTWRVVEMPENAFTGEPE-----TTVSYTVEVRPKGPVPVAALEWRIREDVPTNLRAVKKAAIEVGYEGVQAEKDGNPIGKALARLNGSLNEKAQSASSSAEGFADFILDYENETLGAYL 329          
The following BLAST results are available for this feature:
BLAST of EWM26918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109050|gb|EWM26918.1|0.000e+0100.00START-like domain protein [Nannochloropsis gaditan... [more]
gi|553191672|ref|XP_005855430.1|0.000e+0100.00hypothetical protein NGA_0121600 [Nannochloropsis ... [more]
gi|873218209|emb|CEM39765.1|1.965e-6242.32unnamed protein product [Vitrella brassicaformis C... [more]
gi|298715255|emb|CBJ27904.1|1.485e-5652.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|922856801|gb|KOO25119.1|1.137e-5555.43cyclase dehydrase [Chrysochromulina sp. CCMP291][more]
gi|553191675|ref|XP_005855431.1|4.925e-55100.00hypothetical protein NGA_0121700 [Nannochloropsis ... [more]
gi|1210519789|dbj|GAX21341.1|1.573e-4745.15hypothetical protein FisN_6Lh094 [Fistulifera sola... [more]
gi|1210515156|dbj|GAX25868.1|6.095e-4643.22hypothetical protein FisN_6Hh094 [Fistulifera sola... [more]
gi|219122765|ref|XP_002181710.1|8.627e-4537.34predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397615186|gb|EJK63276.1|8.637e-4544.22hypothetical protein THAOC_16079 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3763rna3763Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications