EWM26929.1, cds3744 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|585109063|gb|EWM26929.1| (dynein intermediate [Nannochloropsis gaditana]) HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query: 1 MTGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEVRERERKAGKGPGHEGWNDWRAFGRRSDMKEKNLKDKNCSFPGA 360
MTGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEVRERERKAGKGPGHEGWNDWRAFGRRSDMKEKNLKDKNCSFPGA
Sbjct: 1 MTGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEVRERERKAGKGPGHEGWNDWRAFGRRSDMKEKNLKDKNCSFPGA 360
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|553184724|ref|XP_005854138.1| (hypothetical protein NGA_0166200 [Nannochloropsis gaditana CCMP526] >gi|422294925|gb|EKU22225.1| hypothetical protein NGA_0166200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 279.256 bits (713), Expect = 1.573e-89 Identity = 159/237 (67.09%), Postives = 159/237 (67.09%), Query Frame = 0
Query: 3 GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLW----------------------------------HTHRPPKPLVSSFTHGANAYDYVNDVA 205
GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDEN WQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLW HTHRPPKPLVSSFTHGANAYDYVNDVA
Sbjct: 79 GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDEN--------------------------------------------WQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWCEHGEGGGEGRKRMGKEEGKERDLHEGRLVNLPGHTHRPPKPLVSSFTHGANAYDYVNDVA 271
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|298707285|emb|CBJ25912.1| (putative: similar to cytoplasmic dynein intermediate chain [Ectocarpus siliculosus]) HSP 1 Score: 130.954 bits (328), Expect = 7.952e-30 Identity = 101/316 (31.96%), Postives = 140/316 (44.30%), Query Frame = 0
Query: 2 TGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEV 317
TGHTYPV+ L NA LL+AS +GRV W+ S+LS+PL +++ +P +S MAV Q DE + +++G ++G IY P ++ H L+T++ +PS +SK L L+LSSS+D T +LW + V + THG YDYV D W P HP +F + + G LGLWNLNHS+E PF P PV V D+ ALTR+AW+ +G+RL VGD G V M +E
Sbjct: 447 TGHTYPVYNL--HIGGTDNAPSLLTASTEGRVSTWNPSQLSQPLQDINLT---------------HAGKPVTISSMAVA-QGDE--QKNIVVGSESGGIYTTP---------------LHFRNSGVVEEYSGHYGLVTSVDANPS-------ASK----PLRGLVLSSSVDWTTRLWRLGQGSNACVQTLTHGT--YDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFTP--PV--KVVDR-----------------------------------CALTRMAWSPDGRRLCVGDAKGYARVFNMDQET 675
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|1021055655|emb|SAM08415.1| (hypothetical protein [Absidia glauca]) HSP 1 Score: 121.709 bits (304), Expect = 1.331e-26 Identity = 97/326 (29.75%), Postives = 139/326 (42.64%), Query Frame = 0
Query: 3 GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFT---HGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEVRERERKAG 325
GHT+PV++L E NAH L+S S DG +C W L L++P D + P K +E VS+ V +E +G + G++Y +A S + + + +R H IT L HP LS S L L+SS+D T+KLW + P L +S T ++ DYV DV W PSHP +F SV G LWNLN + E PF+ S P GS + AL +LAW G++ A+G + GR+++ + EV ++E AG
Sbjct: 494 GHTHPVYSL--EMVGTQNAHNLISGSTDGFICSWQLDMLAQPQDYLELQH-----PAHNKTDE--------VSVTTVGFPDNETTT--FWVGTEEGNVYQASRFESAGSKA--GINQYDTYR--------GHCGAITGLQFHP------LSGP----VDFSDLFLTSSVDWTVKLWRSKSKPSTLSTSVTPLYSFEHSDDYVYDVKWSPSHPALFGSVDGNGQFDLWNLNANTEEPFV----------------------STPVGSGK------------------ALNKLAWDKEGRKTAIGASDGRVYIYDIG-EVSDKEEVAG 741
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|1183329840|gb|ORX59582.1| (WD40 repeat-like protein [Hesseltinella vesiculosa]) HSP 1 Score: 115.161 bits (287), Expect = 1.958e-24 Identity = 95/325 (29.23%), Postives = 131/325 (40.31%), Query Frame = 0
Query: 3 GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPK---------PLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEVR 318
GHT+PV++L E NAH L+SAS DG VC W L L++P D + P K +E + A + +N L+G + G++Y +A S + + + +R H +T L+ HP F S L L+SS+D T+KLW K PL S F H DYV DV W PSHP IF SV G LWNLN + E P + S P GS + AL +LAW G++ +G + GR++V + E R
Sbjct: 370 GHTHPVYSL--EMVGTQNAHHLISASTDGFVCSWLLDMLAQPQDYLELQ-----HPTHNKTDE----------VSATTIGFPDNETSLFLVGTEEGNVYQASRYDSAGSKA--GINQYDTYR--------GHYGAVTGLNFHP----------LFGPVDFSDLFLTSSVDWTVKLWRAKSASKSSTQATNITPLYS-FEHSD---DYVYDVKWSPSHPAIFGSVDGNGQFDLWNLNVNTEEPMV----------------------STPIGSGK------------------ALNKLAWDKEGRKTGLGCSDGRVYVYDIGEMAR 613
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|1183475163|gb|ORY99020.1| (WD40-repeat-containing domain protein [Syncephalastrum racemosum]) HSP 1 Score: 114.39 bits (285), Expect = 2.987e-24 Identity = 88/318 (27.67%), Postives = 122/318 (38.36%), Query Frame = 0
Query: 3 GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKP-----LVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAE 315
GHT+PV++L E NAH L++AS DG VC W L L++P + E P + + L +N +G + G++Y A S + ++H R H +T L HP F S L L+ S+D T+KLW K ++ NA DYV DV W PSHP +F SV G LWNLN E PF+ S P GS + AL +LAW GK+ A+G + GR ++ + E
Sbjct: 377 GHTHPVYSL--EMVGTQNAHNLITASTDGFVCSWQLDMLAQPQEYL---------------ELLHPSHNKTDEVAITTLGFSDNETTSFWVGTEEGNVYQASRYDQAGSKA-------GVNQHDTYR---GHYGAVTGLHFHP----------LFGSVDFSDLFLTCSVDWTVKLWRAKSISKTSTQPTTITPLYSFENADDYVYDVKWSPSHPALFGSVDGSGRFDLWNLNADTEEPFV----------------------STPVGSGR------------------ALNKLAWDKEGKKTAIGSSDGRTYIYDIGE 617
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|1160555143|ref|XP_020437513.1| (cytoplasmic dynein intermediate chain [Polysphondylium pallidum PN500] >gi|281211238|gb|EFA85404.1| cytoplasmic dynein intermediate chain [Polysphondylium pallidum PN500]) HSP 1 Score: 114.39 bits (285), Expect = 3.207e-24 Identity = 85/313 (27.16%), Postives = 131/313 (41.85%), Query Frame = 0
Query: 3 GHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAE 315
GHT+PV+++A NA+ L+S S DG++C W L LS+P++ ++ V SI L E + +G + G IY A GA + +++AH +T++ HP +R SS S+L LSSS D T +LW + +P +P+ S + DYV D W P +P IFA+ G L LW+LN EAP A+ +RS L RL+W+ +G+RL VGD+ G++ + ++
Sbjct: 370 GHTHPVYSMAV--VGSANANSLVSISTDGKLCSWSLDNLSQPIETLDLNSRANTATVSTT-----------TSIAVTSLVFPETEMNTFYVGTEEGVIYQAQAHGA---------------KAGVNERFKAHYGPVTSIDFHPPSRNSS---------EFSNLFLSSSTDWTCRLWSSSKPDQPIYS----FEDYTDYVFDARWSPVNPSIFATGDGSGQLALWDLNEETEAPIF---------------------------RAKTSSRS--------------LNRLSWSADGRRLLVGDSGGQLSLYDSSQ 600
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|1108466948|emb|CRL04258.1| (CLUMA_CG017357, isoform B [Clunio marinus]) HSP 1 Score: 113.62 bits (283), Expect = 5.552e-24 Identity = 97/316 (30.70%), Postives = 138/316 (43.67%), Query Frame = 0
Query: 2 TGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEV 317
T HT+PV+ L+ NAH ++S S+DGR+C W L LS P D E Q +Q + +++ + DE + +LG ++G+++ G +R ++ H +T +S H + SSS F S L L+SS+D TIKLW + + KPL S F A DYV DVA+ P HP +FA+V G L LWNLN E P + + V D GN AL R++W +G + VGD SGRIHV +AE +
Sbjct: 395 TAHTHPVYCLSM--VGTQNAHNVISISSDGRLCSWSLDMLSAPQDTL----------------ELQHRQAKPIAVTCMAFPTDE--VNNFVLGSEDGYVHSASRHG---------------NRSGIGETYEKHLGPVTGISTHHNQ-----SSSDF-----SHLFLTSSIDWTIKLW-SLKDTKPLYS-FEDNA---DYVMDVAFSPIHPSLFAAVDGSGRLDLWNLNQDTEVPTVSV------VID--------------------GNP--------------ALNRVSWTPSGLHVTVGDESGRIHVYDVAENL 620
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|340382793|ref|XP_003389902.1| (PREDICTED: cytoplasmic dynein 1 intermediate chain 2-like [Amphimedon queenslandica]) HSP 1 Score: 113.62 bits (283), Expect = 6.182e-24 Identity = 86/323 (26.63%), Postives = 133/323 (41.18%), Query Frame = 0
Query: 2 TGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWH---------THRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAE 315
+ HT+P++ L E +AH L+S S DG++C W++ LS+P + + Q + P+ V++ ++ E + ++G + G +Y G P Q++ H I+++S H +T ++ S L LSSS+D T+KLW T + PL S T+ DYVNDV W P HP +F SV+ G + WNLNH +E P L T G +AL++++W+ NG LAVGD G IH+ E
Sbjct: 362 SAHTHPIYCL--ELIGSEHAHSLISVSTDGKLCSWNIDNLSQPQESIDL----------------QSRHPRPVAVTSLDFPVGEVNK--FIVGSEEGVVYQGQRHGKKPG---------------VVVQYEGHYGNISSVSCHKATN--------IDQADFSHLFLSSSVDWTVKLWSLKLSNEQQVTSKTATPLCSFETNS----DYVNDVKWSPIHPALFVSVNVEGKIDFWNLNHDVEVPIL------------------TEGLD------------------------IALSKVSWSPNGLLLAVGDVDGNIHIYEAGE 595
BLAST of EWM26929.1 vs. NCBI_GenBank
Match: gi|1108466947|emb|CRL04257.1| (CLUMA_CG017357, isoform A [Clunio marinus]) HSP 1 Score: 113.235 bits (282), Expect = 8.121e-24 Identity = 97/316 (30.70%), Postives = 138/316 (43.67%), Query Frame = 0
Query: 2 TGHTYPVHALATETAAGGNAHVLLSASADGRVCRWDLSRLSEPLDVASVSDVPGDGPVVGKREESQPQQPQDVSIMAVVLQKDENGRDEMLLGGKNGHIYCQPAPGAAPSPSLPSLPSFPAHRHVAARQWQAHGSLITALSLHPSTRTSSLSSSKFRRSSLSSLLLSSSLDCTIKLWHTHRPPKPLVSSFTHGANAYDYVNDVAWCPSHPCIFASVSSGGLLGLWNLNHSLEAPFLPLFPVTGSVADKPASPTPTRGPSAPAGSAQIGNRSLFPPTTPPSSPPVALTRLAWAGNGKRLAVGDTSGRIHVLGMAEEV 317
T HT+PV+ L+ NAH ++S S+DGR+C W L LS P D E Q +Q + +++ + DE + +LG ++G+++ G +R ++ H +T +S H + SSS F S L L+SS+D TIKLW + + KPL S F A DYV DVA+ P HP +FA+V G L LWNLN E P + + V D GN AL R++W +G + VGD SGRIHV +AE +
Sbjct: 416 TAHTHPVYCLSM--VGTQNAHNVISISSDGRLCSWSLDMLSAPQDTL----------------ELQHRQAKPIAVTCMAFPTDE--VNNFVLGSEDGYVHSASRHG---------------NRSGIGETYEKHLGPVTGISTHHNQ-----SSSDF-----SHLFLTSSIDWTIKLW-SLKDTKPLYS-FEDNA---DYVMDVAFSPIHPSLFAAVDGSGRLDLWNLNQDTEVPTVSV------VID--------------------GNP--------------ALNRVSWTPSGLHVTVGDESGRIHVYDVAENL 641 The following BLAST results are available for this feature:
BLAST of EWM26929.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|