EWM26931.1, cds3741 (CDS) Nannochloropsis gaditana

Overview
NameEWM26931.1
Unique Namecds3741
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1133074..1133296 -
Alignment locationCM002461.1:1132840..1132968 -
Alignment locationCM002461.1:1132595..1132740 -
Alignment locationCM002461.1:1132381..1132446 -
Alignment locationCM002461.1:1132035..1132102 -
Alignment locationCM002461.1:1131763..1131891 -
Alignment locationCM002461.1:1131472..1131595 -
Alignment locationCM002461.1:1131209..1131322 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26931.1
Productsignal recognition particle receptor subunit beta
Orig transcript idgnl|cribi|Naga_100274g2.4077.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1133074..1133296 -
CM002461.1supercontigCM002461.1:1132840..1132968 -
CM002461.1supercontigCM002461.1:1132595..1132740 -
CM002461.1supercontigCM002461.1:1132381..1132446 -
CM002461.1supercontigCM002461.1:1132035..1132102 -
CM002461.1supercontigCM002461.1:1131763..1131891 -
CM002461.1supercontigCM002461.1:1131472..1131595 -
CM002461.1supercontigCM002461.1:1131209..1131322 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR019009SRP_receptor_beta_su
IPR024156Small_GTPase_ARF
Homology
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|585109066|gb|EWM26931.1| (signal recognition particle receptor subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MSDPVTSAVEELLEENVFPPPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFISDKIGR 332
            MSDPVTSAVEELLEENVFPPPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFISDKIGR
Sbjct:    1 MSDPVTSAVEELLEENVFPPPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFISDKIGR 332          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|673044785|ref|XP_008876353.1| (hypothetical protein H310_11442 [Aphanomyces invadans] >gi|574468160|gb|ETV95180.1| hypothetical protein H310_11442 [Aphanomyces invadans])

HSP 1 Score: 140.969 bits (354), Expect = 1.459e-36
Identity = 98/244 (40.16%), Postives = 138/244 (56.56%), Query Frame = 0
Query:   91 VLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGI--LKDKD---IRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADF-STHKVREAAEFLYDILTHAAM-DDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
            VL L L F+    A G  P  GGK+       ++LLGPCG GKTAL+H+L    +  +TVTSM E+     L D++   + ++DFPGHERLR    + +  A K+   +FVVDA       +VR+AAEFLYDI  H  + D+G PLLVAC K+D+  A  P+ I++LL +EL +L+ T+          ++++ +PLGR  VP   DVDAP E+ F S ++             E I PL+ FI
Sbjct:   20 VLVLLLAFIIKLAASGSSP--GGKRDV-----ILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKETLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKL---VFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASL----EAHDDDESIPLGRENVPFAFDVDAPCEVVFESYSIHSA----------EAIAPLLDFI 239          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|698808664|ref|XP_009837361.1| (hypothetical protein H257_11974 [Aphanomyces astaci] >gi|574107645|gb|ETV73156.1| hypothetical protein H257_11974 [Aphanomyces astaci])

HSP 1 Score: 140.198 bits (352), Expect = 3.671e-36
Identity = 91/224 (40.62%), Postives = 128/224 (57.14%), Query Frame = 0
Query:  111 PGGKQGRARPSHVVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGI--LKDKD---IRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADF-STHKVREAAEFLYDILTHAAM-DDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
            PGGK+       ++LLGPCG GKTAL+H+L    T  +TVTSM E+     L D+D   + ++DFPGHERLR    + +  A K+   +FVVDA       +VR+AAEFLYDI  H  + D+G PLLVAC K+D+  A  PA I+ +L +EL +L+ T+          ++++ +PLGR  VP   DVDAP E+ F   ++             + I PL+ FI
Sbjct:   38 PGGKRDV-----ILLLGPCGGGKTALFHRLRDGPTKVDTVTSMKETLETFPLFDEDAATVSVLDFPGHERLRSQVSQFYPIAKKL---VFVVDATTIGDAAQVRKAAEFLYDIFVHPKLHDNGIPLLVACSKADMSSAATPANIQTILEAELSQLKSTRASL----ETHDDDESIPLGRENVPFAFDVDAPCEVVFEGYSIHSA----------DAIAPLLDFI 239          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|1173949497|gb|OQR97523.1| (hypothetical protein ACHHYP_10754 [Achlya hypogyna])

HSP 1 Score: 137.117 bits (344), Expect = 5.268e-35
Identity = 92/225 (40.89%), Postives = 131/225 (58.22%), Query Frame = 0
Query:  112 GGKQGRARPSHVVLL-GPCGAGKTALYHQLLYN-TVPETVTSMVESEGIL-----KDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDA--ADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
            GG   R+    +VLL GPCGAGKTAL+H+L    T   TVTSM E+         ++    + DFPGHER+R     QF    K   +IFVVD+  A+ + H +R+AAEFLYDI TH  ++D G P+++AC KSD   A   A +++LL SEL +L+ T+  A ++ +GE++E  +PLGR   P   D+DAP E+TF + ++             E + PL+ FI
Sbjct:   33 GGSGIRSSKRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLFDEENATFNICDFPGHERMRS-QAGQFYPIAK--KIIFVVDSTTANDAGH-IRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTR--ASLEAHGEDDE-SIPLGRDNAPFAFDIDAPCEVTFENYSIVTP----------EALNPLLDFI 240          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|813107727|ref|XP_012194376.1| (hypothetical protein SPRG_00769 [Saprolegnia parasitica CBS 223.65] >gi|641540943|gb|KDO34706.1| hypothetical protein SPRG_00769 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 132.494 bits (332), Expect = 2.686e-33
Identity = 80/185 (43.24%), Postives = 120/185 (64.86%), Query Frame = 0
Query:  123 VVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGIL-----KDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDA--ADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTF 298
            V+L+GPCGAGKTAL+H+L    T  ETVTSM E+         ++  I + DFPGHER+R    + +  A K+   IFVVDA  A+ ++H +R+AAEFLYDI TH  ++D G P+++AC K+D   A  PA +++LL +EL +L+ T+  A ++ +G+++E  +PLGR        +DAP ++TF
Sbjct:   45 VLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKI---IFVVDATTANDASH-IRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTR--ASLEAHGDDDE-SIPLGRDNALFEFAIDAPCDVTF 222          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|669170073|ref|XP_008620385.1| (hypothetical protein SDRG_15975 [Saprolegnia diclina VS20] >gi|530727928|gb|EQC26170.1| hypothetical protein SDRG_15975 [Saprolegnia diclina VS20])

HSP 1 Score: 132.109 bits (331), Expect = 3.765e-33
Identity = 78/185 (42.16%), Postives = 120/185 (64.86%), Query Frame = 0
Query:  123 VVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGIL-----KDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDA--ADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTF 298
            V+L+GPCGAGKTAL+H+L    T  +TVTSM E+         ++  I + DFPGHER+R    + +  A K+   IF+VDA  A+ ++H +R+AAEFLYDI TH  ++D G P+++AC K+D   A  PA ++ LL +EL +++ T+  A ++ +G+++E  +PLGR   P    +DAP ++TF
Sbjct:   45 VLLVGPCGAGKTALFHRLRDGPTKVQTVTSMKETMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKI---IFIVDATTANDASH-IRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQLLLEAELTQIKSTR--ASLEAHGDDDE-SIPLGRDNAPFEFAIDAPCDVTF 222          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|953501399|emb|CEG37400.1| (Signal recognition particle receptor, beta subunit (small G protein superfamily) [Plasmopara halstedii])

HSP 1 Score: 119.398 bits (298), Expect = 3.578e-28
Identity = 82/250 (32.80%), Postives = 135/250 (54.00%), Query Frame = 0
Query:   66 VDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSM--------VESEGILK--DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEE-DRLPLGRVAVPLNLDVDAPSELTFASTNV 303
            +D       G P   ++   +L ++ L L+L+F  I   +G   L  G  G+ + + ++LLGP  AGKT+ +H +      +TV+SM        V S+  L   D ++ +VD+PGHERLR      +      + ++F VDA+D ++   R+AAEFLYDI  +  ++D  PPL+V C+KS+  GA     ++  L  EL +L+ T+     +G+ +E++  ++P+GR   P   DVDAP E+ F   +V
Sbjct:    2 MDLLTYNTYGAPAYIVVPFGVLAVICLVLALHF--ITHIQG---LNAGLTGKKKKT-ILLLGPRHAGKTSFFHLIHDGIHVDTVSSMKERTDRFIVHSKYNLDKLDTELTVVDYPGHERLRSRVADFY---PVTSCIVFFVDASDVAS--FRKAAEFLYDIFANKNVNDQSPPLMVVCNKSEAVGAVGSQVVRDALEKELTKLKATRSSLETEGDDDEQDLTQVPVGRDGAPFQFDVDAPCEILFVKCSV 240          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|729701441|emb|CEJ01652.1| (hypothetical protein RMCBS344292_15675 [Rhizopus microsporus])

HSP 1 Score: 115.931 bits (289), Expect = 2.992e-27
Identity = 84/254 (33.07%), Postives = 125/254 (49.21%), Query Frame = 0
Query:   76 LPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEG--ILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGP-PLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
            L  + + +  LL+  V+ LS Y                KQ R   + V+LLG C AGKTA+Y  L +N    TV+SM E+EG  +L +K   LVD PGHER+R  +   FL   +   ++FVVD+   S  ++R  AE+LYD+L  A +     P+L+AC+KSD+  A    ++K +L +E+ RLR T+   +     EE+E    LG        D            +V  Q +F      +EDI  +  +I
Sbjct:    6 LIKAIVAVAVLLITTVIVLSFY--------------TKKQNR---NAVLLLGICDAGKTAMYTLLRFNEKRPTVSSMKENEGQLVLSNKTYDLVDLPGHERVRYRY-NDFLPVTR--AIVFVVDSTTLS-RQIRSVAEYLYDVLAKAQVQKNRIPILIACNKSDMITALPTDKVKLMLENEINRLRSTRTARV--EQSEEDEAEAYLGYEGENFKFD------------HVDNQVEFVSCSVEKEDIEKVQEWI 224          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|727151041|emb|CEG66945.1| (hypothetical protein RMATCC62417_03436 [Rhizopus microsporus])

HSP 1 Score: 114.775 bits (286), Expect = 9.343e-27
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 0
Query:   76 LPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEG--ILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGP-PLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQ 306
            L  + + +  LL+  V+ LS Y                KQ R   + V+LLG C AGKTA+Y  L +N    TV+SM E+EG  +L +K   LVD PGHER+R  +   FL   +   ++FVVD+   +  ++R  AE+LYD+L  A +     P+L+AC+KSD+  A    ++K +L +E+ RLR T+   +     EE+E    LG        D    +++ F S +V ++
Sbjct:    6 LIKAIVAVAVLLITTVIVLSFY--------------TKKQNR---NAVLLLGICDAGKTAMYTLLRFNEKRPTVSSMKENEGQLVLSNKTYDLVDLPGHERVRYRY-NDFLPVTRT--IVFVVDSTTLN-RQIRSVAEYLYDVLAKAQVQKNRIPILIACNKSDMITALPTDKVKLMLENEINRLRSTRTARV--EQSEEDETEAYLGYEGENFKFD-HVDNQVEFVSCSVEKE 215          
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|695383314|ref|XP_009517667.1| (Sar1p-like ras-family protein [Phytophthora sojae] >gi|348690578|gb|EGZ30392.1| Sar1p-like ras-family protein [Phytophthora sojae])

HSP 1 Score: 115.161 bits (287), Expect = 1.503e-26
Identity = 70/193 (36.27%), Postives = 109/193 (56.48%), Query Frame = 0
Query:  124 VLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILK----------DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVI-FVVDAADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEE-DRLPLGRVAVPLNLDVDAPSELTFASTNV 303
            +LLGP  AGKT+ +H +      +TV+SM E                D ++ +VD+PGHERLR     +  D   VAG I F VDA+D  +   R+AAEFLYDI  +  ++D  PP++V C+KS+  GA +P  ++  L  EL +L+ T+     +G+ +E++  ++P+GR       DVD+P E++F   +V
Sbjct:   54 LLLGPRHAGKTSFFHLIRDGEHVDTVSSMKEQTFRFVVHPKYNPDKFDAELTVVDYPGHERLRS----RVADFYPVAGCIAFFVDASDVPS--FRKAAEFLYDIFANKKVNDQAPPIMVVCNKSEASGASSPQAVRDALEKELTQLKTTRSSLETEGDEDEQDLSQVPVGRDGANFEFDVDSPCEISFVKCSV 240          
The following BLAST results are available for this feature:
BLAST of EWM26931.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109066|gb|EWM26931.1|0.000e+0100.00signal recognition particle receptor subunit beta ... [more]
gi|673044785|ref|XP_008876353.1|1.459e-3640.16hypothetical protein H310_11442 [Aphanomyces invad... [more]
gi|698808664|ref|XP_009837361.1|3.671e-3640.63hypothetical protein H257_11974 [Aphanomyces astac... [more]
gi|1173949497|gb|OQR97523.1|5.268e-3540.89hypothetical protein ACHHYP_10754 [Achlya hypogyna... [more]
gi|813107727|ref|XP_012194376.1|2.686e-3343.24hypothetical protein SPRG_00769 [Saprolegnia paras... [more]
gi|669170073|ref|XP_008620385.1|3.765e-3342.16hypothetical protein SDRG_15975 [Saprolegnia dicli... [more]
gi|953501399|emb|CEG37400.1|3.578e-2832.80Signal recognition particle receptor, beta subunit... [more]
gi|729701441|emb|CEJ01652.1|2.992e-2733.07hypothetical protein RMCBS344292_15675 [Rhizopus m... [more]
gi|727151041|emb|CEG66945.1|9.343e-2733.76hypothetical protein RMATCC62417_03436 [Rhizopus m... [more]
gi|695383314|ref|XP_009517667.1|1.503e-2636.27Sar1p-like ras-family protein [Phytophthora sojae]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3750rna3750Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications