EWM26931.1, cds3741 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|585109066|gb|EWM26931.1| (signal recognition particle receptor subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MSDPVTSAVEELLEENVFPPPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFISDKIGR 332
MSDPVTSAVEELLEENVFPPPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFISDKIGR
Sbjct: 1 MSDPVTSAVEELLEENVFPPPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFISDKIGR 332
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|673044785|ref|XP_008876353.1| (hypothetical protein H310_11442 [Aphanomyces invadans] >gi|574468160|gb|ETV95180.1| hypothetical protein H310_11442 [Aphanomyces invadans]) HSP 1 Score: 140.969 bits (354), Expect = 1.459e-36 Identity = 98/244 (40.16%), Postives = 138/244 (56.56%), Query Frame = 0
Query: 91 VLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGI--LKDKD---IRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADF-STHKVREAAEFLYDILTHAAM-DDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
VL L L F+ A G P GGK+ ++LLGPCG GKTAL+H+L + +TVTSM E+ L D++ + ++DFPGHERLR + + A K+ +FVVDA +VR+AAEFLYDI H + D+G PLLVAC K+D+ A P+ I++LL +EL +L+ T+ ++++ +PLGR VP DVDAP E+ F S ++ E I PL+ FI
Sbjct: 20 VLVLLLAFIIKLAASGSSP--GGKRDV-----ILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKETLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKL---VFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASL----EAHDDDESIPLGRENVPFAFDVDAPCEVVFESYSIHSA----------EAIAPLLDFI 239
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|698808664|ref|XP_009837361.1| (hypothetical protein H257_11974 [Aphanomyces astaci] >gi|574107645|gb|ETV73156.1| hypothetical protein H257_11974 [Aphanomyces astaci]) HSP 1 Score: 140.198 bits (352), Expect = 3.671e-36 Identity = 91/224 (40.62%), Postives = 128/224 (57.14%), Query Frame = 0
Query: 111 PGGKQGRARPSHVVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGI--LKDKD---IRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADF-STHKVREAAEFLYDILTHAAM-DDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
PGGK+ ++LLGPCG GKTAL+H+L T +TVTSM E+ L D+D + ++DFPGHERLR + + A K+ +FVVDA +VR+AAEFLYDI H + D+G PLLVAC K+D+ A PA I+ +L +EL +L+ T+ ++++ +PLGR VP DVDAP E+ F ++ + I PL+ FI
Sbjct: 38 PGGKRDV-----ILLLGPCGGGKTALFHRLRDGPTKVDTVTSMKETLETFPLFDEDAATVSVLDFPGHERLRSQVSQFYPIAKKL---VFVVDATTIGDAAQVRKAAEFLYDIFVHPKLHDNGIPLLVACSKADMSSAATPANIQTILEAELSQLKSTRASL----ETHDDDESIPLGRENVPFAFDVDAPCEVVFEGYSIHSA----------DAIAPLLDFI 239
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|1173949497|gb|OQR97523.1| (hypothetical protein ACHHYP_10754 [Achlya hypogyna]) HSP 1 Score: 137.117 bits (344), Expect = 5.268e-35 Identity = 92/225 (40.89%), Postives = 131/225 (58.22%), Query Frame = 0
Query: 112 GGKQGRARPSHVVLL-GPCGAGKTALYHQLLYN-TVPETVTSMVESEGIL-----KDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDA--ADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
GG R+ +VLL GPCGAGKTAL+H+L T TVTSM E+ ++ + DFPGHER+R QF K +IFVVD+ A+ + H +R+AAEFLYDI TH ++D G P+++AC KSD A A +++LL SEL +L+ T+ A ++ +GE++E +PLGR P D+DAP E+TF + ++ E + PL+ FI
Sbjct: 33 GGSGIRSSKRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLFDEENATFNICDFPGHERMRS-QAGQFYPIAK--KIIFVVDSTTANDAGH-IRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTR--ASLEAHGEDDE-SIPLGRDNAPFAFDIDAPCEVTFENYSIVTP----------EALNPLLDFI 240
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|813107727|ref|XP_012194376.1| (hypothetical protein SPRG_00769 [Saprolegnia parasitica CBS 223.65] >gi|641540943|gb|KDO34706.1| hypothetical protein SPRG_00769 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 132.494 bits (332), Expect = 2.686e-33 Identity = 80/185 (43.24%), Postives = 120/185 (64.86%), Query Frame = 0
Query: 123 VVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGIL-----KDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDA--ADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTF 298
V+L+GPCGAGKTAL+H+L T ETVTSM E+ ++ I + DFPGHER+R + + A K+ IFVVDA A+ ++H +R+AAEFLYDI TH ++D G P+++AC K+D A PA +++LL +EL +L+ T+ A ++ +G+++E +PLGR +DAP ++TF
Sbjct: 45 VLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKI---IFVVDATTANDASH-IRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTR--ASLEAHGDDDE-SIPLGRDNALFEFAIDAPCDVTF 222
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|669170073|ref|XP_008620385.1| (hypothetical protein SDRG_15975 [Saprolegnia diclina VS20] >gi|530727928|gb|EQC26170.1| hypothetical protein SDRG_15975 [Saprolegnia diclina VS20]) HSP 1 Score: 132.109 bits (331), Expect = 3.765e-33 Identity = 78/185 (42.16%), Postives = 120/185 (64.86%), Query Frame = 0
Query: 123 VVLLGPCGAGKTALYHQLLYN-TVPETVTSMVESEGIL-----KDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDA--ADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTF 298
V+L+GPCGAGKTAL+H+L T +TVTSM E+ ++ I + DFPGHER+R + + A K+ IF+VDA A+ ++H +R+AAEFLYDI TH ++D G P+++AC K+D A PA ++ LL +EL +++ T+ A ++ +G+++E +PLGR P +DAP ++TF
Sbjct: 45 VLLVGPCGAGKTALFHRLRDGPTKVQTVTSMKETMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKI---IFIVDATTANDASH-IRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQLLLEAELTQIKSTR--ASLEAHGDDDE-SIPLGRDNAPFEFAIDAPCDVTF 222
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|953501399|emb|CEG37400.1| (Signal recognition particle receptor, beta subunit (small G protein superfamily) [Plasmopara halstedii]) HSP 1 Score: 119.398 bits (298), Expect = 3.578e-28 Identity = 82/250 (32.80%), Postives = 135/250 (54.00%), Query Frame = 0
Query: 66 VDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSM--------VESEGILK--DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEE-DRLPLGRVAVPLNLDVDAPSELTFASTNV 303
+D G P ++ +L ++ L L+L+F I +G L G G+ + + ++LLGP AGKT+ +H + +TV+SM V S+ L D ++ +VD+PGHERLR + + ++F VDA+D ++ R+AAEFLYDI + ++D PPL+V C+KS+ GA ++ L EL +L+ T+ +G+ +E++ ++P+GR P DVDAP E+ F +V
Sbjct: 2 MDLLTYNTYGAPAYIVVPFGVLAVICLVLALHF--ITHIQG---LNAGLTGKKKKT-ILLLGPRHAGKTSFFHLIHDGIHVDTVSSMKERTDRFIVHSKYNLDKLDTELTVVDYPGHERLRSRVADFY---PVTSCIVFFVDASDVAS--FRKAAEFLYDIFANKNVNDQSPPLMVVCNKSEAVGAVGSQVVRDALEKELTKLKATRSSLETEGDDDEQDLTQVPVGRDGAPFQFDVDAPCEILFVKCSV 240
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|729701441|emb|CEJ01652.1| (hypothetical protein RMCBS344292_15675 [Rhizopus microsporus]) HSP 1 Score: 115.931 bits (289), Expect = 2.992e-27 Identity = 84/254 (33.07%), Postives = 125/254 (49.21%), Query Frame = 0
Query: 76 LPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEG--ILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGP-PLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDIGPLMTFI 326
L + + + LL+ V+ LS Y KQ R + V+LLG C AGKTA+Y L +N TV+SM E+EG +L +K LVD PGHER+R + FL + ++FVVD+ S ++R AE+LYD+L A + P+L+AC+KSD+ A ++K +L +E+ RLR T+ + EE+E LG D +V Q +F +EDI + +I
Sbjct: 6 LIKAIVAVAVLLITTVIVLSFY--------------TKKQNR---NAVLLLGICDAGKTAMYTLLRFNEKRPTVSSMKENEGQLVLSNKTYDLVDLPGHERVRYRY-NDFLPVTR--AIVFVVDSTTLS-RQIRSVAEYLYDVLAKAQVQKNRIPILIACNKSDMITALPTDKVKLMLENEINRLRSTRTARV--EQSEEDEAEAYLGYEGENFKFD------------HVDNQVEFVSCSVEKEDIEKVQEWI 224
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|727151041|emb|CEG66945.1| (hypothetical protein RMATCC62417_03436 [Rhizopus microsporus]) HSP 1 Score: 114.775 bits (286), Expect = 9.343e-27 Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 0
Query: 76 LPHSGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEG--ILKDKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGP-PLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQ 306
L + + + LL+ V+ LS Y KQ R + V+LLG C AGKTA+Y L +N TV+SM E+EG +L +K LVD PGHER+R + FL + ++FVVD+ + ++R AE+LYD+L A + P+L+AC+KSD+ A ++K +L +E+ RLR T+ + EE+E LG D +++ F S +V ++
Sbjct: 6 LIKAIVAVAVLLITTVIVLSFY--------------TKKQNR---NAVLLLGICDAGKTAMYTLLRFNEKRPTVSSMKENEGQLVLSNKTYDLVDLPGHERVRYRY-NDFLPVTRT--IVFVVDSTTLN-RQIRSVAEYLYDVLAKAQVQKNRIPILIACNKSDMITALPTDKVKLMLENEINRLRSTRTARV--EQSEEDETEAYLGYEGENFKFD-HVDNQVEFVSCSVEKE 215
BLAST of EWM26931.1 vs. NCBI_GenBank
Match: gi|695383314|ref|XP_009517667.1| (Sar1p-like ras-family protein [Phytophthora sojae] >gi|348690578|gb|EGZ30392.1| Sar1p-like ras-family protein [Phytophthora sojae]) HSP 1 Score: 115.161 bits (287), Expect = 1.503e-26 Identity = 70/193 (36.27%), Postives = 109/193 (56.48%), Query Frame = 0
Query: 124 VLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILK----------DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVI-FVVDAADFSTHKVREAAEFLYDILTHAAMDD-GPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEE-DRLPLGRVAVPLNLDVDAPSELTFASTNV 303
+LLGP AGKT+ +H + +TV+SM E D ++ +VD+PGHERLR + D VAG I F VDA+D + R+AAEFLYDI + ++D PP++V C+KS+ GA +P ++ L EL +L+ T+ +G+ +E++ ++P+GR DVD+P E++F +V
Sbjct: 54 LLLGPRHAGKTSFFHLIRDGEHVDTVSSMKEQTFRFVVHPKYNPDKFDAELTVVDYPGHERLRS----RVADFYPVAGCIAFFVDASDVPS--FRKAAEFLYDIFANKKVNDQAPPIMVVCNKSEASGASSPQAVRDALEKELTQLKTTRSSLETEGDEDEQDLSQVPVGRDGANFEFDVDSPCEISFVKCSV 240 The following BLAST results are available for this feature:
BLAST of EWM26931.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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