EWM26966.1, cds3706 (CDS) Nannochloropsis gaditana

Overview
NameEWM26966.1
Unique Namecds3706
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:1043236..1043685 -
Alignment locationCM002461.1:1041446..1042926 -
Alignment locationCM002461.1:1040862..1041237 -
Alignment locationCM002461.1:1040374..1040631 -

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Properties
Property NameValue
Protein idEWM26966.1
ProductZinc finger, MYND-type
Orig transcript idgnl|cribi|Naga_100392g3.5847.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1043236..1043685 -
CM002461.1supercontigCM002461.1:1041446..1042926 -
CM002461.1supercontigCM002461.1:1040862..1041237 -
CM002461.1supercontigCM002461.1:1040374..1040631 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
[Close]
BLAST of EWM26966.1 vs. NCBI_GenBank
Match: gi|585109128|gb|EWM26966.1| (Zinc finger, MYND-type [Nannochloropsis gaditana])

HSP 1 Score: 1706.42 bits (4418), Expect = 0.000e+0
Identity = 854/854 (100.00%), Postives = 854/854 (100.00%), Query Frame = 0 
Query:    1 MALSSVTSSIEPWGSLPREGDLASRVTDLPVLTTSPLAGLSLAHMLPGISQPEARTCVAESWQAITGPDALLPEEYLRLPTAELQPLFESDLRALADARNPPRERCRLAHYLGLFSGTPRGACMYAQADWYVPTLYGVVEEINGLYASGQARLRGLWTFLRHVTAETRRSRGALQALVHALGLLTVLDLANMGRTSAESRSGTETARPPSLPPSLLVQLSEFEASLTETKLCLLEAASLVLQYSHSKGEVCGATQSLGLFEVMGGEGNAIMAEGAAGWHLFVGAGGLGPVAAALAGLEEGKEEGREEGVGKEEKGESLEVRSARRTDRLSILSFLTDLGPAHATLILPMVGALVRWAGKENPDYAHERTFALLSLARFLAQGKDGEDARFAATLGLYPVLVRRLQGYRRAVIGEEGNEEKQKRCACCQGETGGAEEEGGGEAGEHGELLPAALGMLVSLLLHSPETWATARTDAVQGGPLYRTLNSLLHEALHWAPEPMRSIVSGLVVACIVLLVHPVPPQGTSRAGTRTSEAGSRGRVRTGGTTATKENCREGQDEGVGGVGDQGEMVTRGILTRLWAVPDGNPRSSSVFSCVRETVRYRRLTCASPGVWRLMVHVLLVALMVIHPREVAEEGKVDGGEEKAGPETGAGALRAREEFTDHAALDAGVQYLASAVVMGAEGRKEWEEVRATFWADGTAALLEMLQKKNKDRGGLMLWGPGGWEGLEGVGGGGEGSVCGMCGISAEMLGRNTLLRCARCRRVRYCSKGCQVWHWKKGGHREACQSPPPEPEPSPAPSVPVAASPPPSPSSSTSPASSPPPPCSFLLSSSSSPGPCVPQNSAKDLAGDSAALAQQQ 854
            MALSSVTSSIEPWGSLPREGDLASRVTDLPVLTTSPLAGLSLAHMLPGISQPEARTCVAESWQAITGPDALLPEEYLRLPTAELQPLFESDLRALADARNPPRERCRLAHYLGLFSGTPRGACMYAQADWYVPTLYGVVEEINGLYASGQARLRGLWTFLRHVTAETRRSRGALQALVHALGLLTVLDLANMGRTSAESRSGTETARPPSLPPSLLVQLSEFEASLTETKLCLLEAASLVLQYSHSKGEVCGATQSLGLFEVMGGEGNAIMAEGAAGWHLFVGAGGLGPVAAALAGLEEGKEEGREEGVGKEEKGESLEVRSARRTDRLSILSFLTDLGPAHATLILPMVGALVRWAGKENPDYAHERTFALLSLARFLAQGKDGEDARFAATLGLYPVLVRRLQGYRRAVIGEEGNEEKQKRCACCQGETGGAEEEGGGEAGEHGELLPAALGMLVSLLLHSPETWATARTDAVQGGPLYRTLNSLLHEALHWAPEPMRSIVSGLVVACIVLLVHPVPPQGTSRAGTRTSEAGSRGRVRTGGTTATKENCREGQDEGVGGVGDQGEMVTRGILTRLWAVPDGNPRSSSVFSCVRETVRYRRLTCASPGVWRLMVHVLLVALMVIHPREVAEEGKVDGGEEKAGPETGAGALRAREEFTDHAALDAGVQYLASAVVMGAEGRKEWEEVRATFWADGTAALLEMLQKKNKDRGGLMLWGPGGWEGLEGVGGGGEGSVCGMCGISAEMLGRNTLLRCARCRRVRYCSKGCQVWHWKKGGHREACQSPPPEPEPSPAPSVPVAASPPPSPSSSTSPASSPPPPCSFLLSSSSSPGPCVPQNSAKDLAGDSAALAQQQ
Sbjct:    1 MALSSVTSSIEPWGSLPREGDLASRVTDLPVLTTSPLAGLSLAHMLPGISQPEARTCVAESWQAITGPDALLPEEYLRLPTAELQPLFESDLRALADARNPPRERCRLAHYLGLFSGTPRGACMYAQADWYVPTLYGVVEEINGLYASGQARLRGLWTFLRHVTAETRRSRGALQALVHALGLLTVLDLANMGRTSAESRSGTETARPPSLPPSLLVQLSEFEASLTETKLCLLEAASLVLQYSHSKGEVCGATQSLGLFEVMGGEGNAIMAEGAAGWHLFVGAGGLGPVAAALAGLEEGKEEGREEGVGKEEKGESLEVRSARRTDRLSILSFLTDLGPAHATLILPMVGALVRWAGKENPDYAHERTFALLSLARFLAQGKDGEDARFAATLGLYPVLVRRLQGYRRAVIGEEGNEEKQKRCACCQGETGGAEEEGGGEAGEHGELLPAALGMLVSLLLHSPETWATARTDAVQGGPLYRTLNSLLHEALHWAPEPMRSIVSGLVVACIVLLVHPVPPQGTSRAGTRTSEAGSRGRVRTGGTTATKENCREGQDEGVGGVGDQGEMVTRGILTRLWAVPDGNPRSSSVFSCVRETVRYRRLTCASPGVWRLMVHVLLVALMVIHPREVAEEGKVDGGEEKAGPETGAGALRAREEFTDHAALDAGVQYLASAVVMGAEGRKEWEEVRATFWADGTAALLEMLQKKNKDRGGLMLWGPGGWEGLEGVGGGGEGSVCGMCGISAEMLGRNTLLRCARCRRVRYCSKGCQVWHWKKGGHREACQSPPPEPEPSPAPSVPVAASPPPSPSSSTSPASSPPPPCSFLLSSSSSPGPCVPQNSAKDLAGDSAALAQQQ 854
The following BLAST results are available for this feature:
BLAST of EWM26966.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109128|gb|EWM26966.1|0.000e+0100.00Zinc finger, MYND-type [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3715rna3715Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications