EWM30220.1, cds369 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|585112879|gb|EWM30220.1| (60s ribosomal protein l13a [Nannochloropsis gaditana]) HSP 1 Score: 436.032 bits (1120), Expect = 8.379e-155 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query: 1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGYHVAPTPTAERI 213
MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGYHVAPTPTAERI
Sbjct: 1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGYHVAPTPTAERI 213
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|298714763|emb|CBJ25662.1| (60S ribosomal protein L13a [Ectocarpus siliculosus]) HSP 1 Score: 270.396 bits (690), Expect = 2.072e-89 Identity = 128/196 (65.31%), Postives = 159/196 (81.12%), Query Frame = 0
Query: 8 VVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAA-SELSAVNNVLAGFGY 202
V +DGRGHLLGRL+S+VAKELL GQKVVVVRCE++ ISG LVRN +YMQ+ +KR NTNPKRGP+H+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIPAPYD KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H +L+ RLEA+RKIK+EAYY KK AAK L ++ A + L+AV VL +G+
Sbjct: 6 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKK---AAKQLKDKATAEANLAAVAPVLEEYGF 198
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|156377756|ref|XP_001630812.1| (predicted protein [Nematostella vectensis] >gi|156217840|gb|EDO38749.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 266.544 bits (680), Expect = 7.450e-88 Identity = 120/202 (59.41%), Postives = 155/202 (76.73%), Query Frame = 0
Query: 1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
M F+ K++VIDG GHLLGRL+S VAK +LSGQ+VVVVRCE++ ISG RN +Y+ FLRKRTNT P GPFH+RAPSRI WRT+RGM+PHKT +G +A+ R+ F+G+P PYD +KR+VVP ALK++RLKPGR+FC L RL+HEVGW ++D++ LE KRK K++ Y++ KK K AE A EL +VN LAG+GY
Sbjct: 1 MGFE-KQIVIDGAGHLLGRLASTVAKSILSGQRVVVVRCEKICISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKKGTEAMNRMKVFDGVPPPYDKEKRMVVPSALKVIRLKPGRKFCVLGRLSHEVGWKYQDILETLEEKRKAKSKLYFEHKKKVQKLKQTAELNKADELKSVNKTLAGYGY 201
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|635362721|emb|CCI10404.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 263.077 bits (671), Expect = 2.851e-86 Identity = 127/202 (62.87%), Postives = 155/202 (76.73%), Query Frame = 0
Query: 1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
M F+ K VV+D RGHLLGRL+S++AKELL GQ+VV VRCE L ISG VRN ++MQFL KRT TNPK+GP HYRAPSR+LWRTIRGMLPHKT RGA AL RL F+G+P+PYD +KR+V+P AL+++RLK RRF L +LA EVGW H DLVARLEAKRK+K+EAYY++K A A A +K +E + + L FGY
Sbjct: 1 MVFE-KPVVVDCRGHLLGRLASLIAKELLQGQQVVAVRCEALEISGSHVRNKVKFMQFLNKRTATNPKKGPIHYRAPSRMLWRTIRGMLPHKTARGAAALQRLKAFDGVPSPYDKQKRMVIPDALRVIRLKANRRFTILGQLASEVGWKHGDLVARLEAKRKLKSEAYYKKKLAQKKRMADATKKVVTEHAELKPTLEKFGY 201
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1191052425|ref|XP_020904097.1| (60S ribosomal protein L13a-like [Exaiptasia pallida]) HSP 1 Score: 261.151 bits (666), Expect = 1.628e-85 Identity = 118/198 (59.60%), Postives = 152/198 (76.77%), Query Frame = 0
Query: 5 SKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
S++++ID GHLLGRL+S VAK LL GQ+VVVVRCE++ ISG RN +Y+ FLRKRTNT P GPFH+RAPSRI WRT+RGM+PHKT RG +A+ RL F+G+P PYD +KR+VVP AL+++RLKPGR+FC L RL+HEVGW ++D+++ LE KRK K+ Y+ KK K AE+ ASEL +VN VL G+GY
Sbjct: 21 SQQILIDASGHLLGRLASTVAKSLLLGQRVVVVRCEQINISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 218
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|961375754|gb|ALS04621.1| (60S ribosomal protein L13a [Pseudodiaptomus poplesia] >gi|961376180|gb|ALS04834.1| 60S ribosomal protein L13a [Pseudodiaptomus poplesia]) HSP 1 Score: 260.381 bits (664), Expect = 2.215e-85 Identity = 122/203 (60.10%), Postives = 150/203 (73.89%), Query Frame = 0
Query: 3 FDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAK--ALAERKAASELSAVNNVLAGFGYH 203
F K +VIDGRGH+LGRLSSIVAK +L+G KVVVVRCE + ISG RN +Y+ FLRKR N P RGPFH+RAP +I WRT+RGM+PHKT RG AL RL TFEG+P PYD KK++V+P ALK+LRLK GR+FC++ RL HEVGW ++D+VA LEAKRK+K EAYY+ KK AK L + K A ++ V+ FGY
Sbjct: 4 FSPKPLVIDGRGHMLGRLSSIVAKLILNGNKVVVVRCEGINISGNFYRNKLKYLDFLRKRCNVKPSRGPFHFRAPGKIFWRTVRGMIPHKTERGKAALKRLQTFEGVPPPYDKKKKMVIPSALKVLRLKHGRKFCSVGRLGHEVGWKYQDIVAALEAKRKVKGEAYYKAKKTIAVAKKAVLKDAKVAKRIATHQKVIESFGYQ 206
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1045918774|gb|OCH95815.1| (60S ribosomal protein L13a [Obba rivulosa]) HSP 1 Score: 259.225 bits (661), Expect = 4.487e-85 Identity = 126/202 (62.38%), Postives = 159/202 (78.71%), Query Frame = 0
Query: 2 TFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKR-GPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
TF S +VIDG+GHLLGRL+SIVAK++LSGQK+VVVRCEE+ ISG RN RY FL KR NPK+ GPFH+RAPS+IL+R IRGM+PHKT RGA AL RL FEG+P PYD KKR+VVP+AL++LRLKPGR++CT+ RL+HEVGWG++D+V RLE KRK+KA+A++++K TAA L ++ A S+ N LA GY
Sbjct: 3 TFSSTPIVIDGKGHLLGRLASIVAKQILSGQKIVVVRCEEINISGSFFRNKLRYHNFLHKRHIVNPKKSGPFHHRAPSKILYRAIRGMVPHKTARGAAALERLKLFEGVPPPYDRKKRMVVPEALRVLRLKPGRKYCTVKRLSHEVGWGYKDVVDRLEEKRKVKAQAFHERK---TAAIKLRQKAVADTASSFEN-LAQLGY 200
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1149602822|gb|OON09955.1| (ribosomal protein L13 [Batrachochytrium salamandrivorans]) HSP 1 Score: 258.84 bits (660), Expect = 7.511e-85 Identity = 123/198 (62.12%), Postives = 153/198 (77.27%), Query Frame = 0
Query: 5 SKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
KE+VID +GHLLGRL+SI+AK+LL+GQKVV+VR EE+ +SG RN +YM FLRKR NP+RGPFH+RAPSRI +RT+RGM+PHKT RGA AL RL FEG+P PYDTKKRVVVP AL++LRL PGR+FCTL RL+ E GW + D+VARLE KRK K ++Q+K A +A+A KAA L+ V VLA +G+
Sbjct: 4 EKEIVIDAKGHLLGRLASIIAKQLLNGQKVVLVRSEEINMSGPFFRNKLKYMAFLRKRCVVNPQRGPFHFRAPSRIFYRTVRGMIPHKTPRGAAALERLKVFEGVPPPYDTKKRVVVPAALRVLRLAPGRKFCTLKRLSSEFGWKYNDVVARLEEKRKAKGTLFFQRKTALLRRRAVAVSKAADALAPVTKVLATYGH 201
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|999987002|gb|KXJ26127.1| (60S ribosomal protein L13a [Exaiptasia pallida]) HSP 1 Score: 258.84 bits (660), Expect = 9.571e-85 Identity = 117/196 (59.69%), Postives = 150/196 (76.53%), Query Frame = 0
Query: 7 EVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
+++ID GHLLGRL+S VAK LL GQ+VVVVRCE++ ISG RN +Y+ FLRKRTNT P GPFH+RAPSRI WRT+RGM+PHKT RG +A+ RL F+G+P PYD +KR+VVP AL+++RLKPGR+FC L RL+HEVGW ++D+++ LE KRK K+ Y+ KK K AE+ ASEL +VN VL G+GY
Sbjct: 8 QILIDASGHLLGRLASTVAKSLLLGQRVVVVRCEQINISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 203
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1183373972|gb|ORX99658.1| (60S ribosomal protein L16 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 258.455 bits (659), Expect = 1.190e-84 Identity = 122/202 (60.40%), Postives = 157/202 (77.72%), Query Frame = 0
Query: 1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
M+ K VVIDGRGHLLGRL+SI++K++L+GQKVVVVRCEEL ++G RN +Y FLRKR NP +GP+H+RAPSRILWRTIRGM+PHKT RG A+ RL FEG+P PYDT KR+VVP AL++LRLKPGR++ T+SRL+ EVGW + D+V +LE KRK+K++AYY++KKA KA A A +L ++N LA +GY
Sbjct: 1 MSTFEKVVVIDGRGHLLGRLASIISKQILNGQKVVVVRCEELNVTGSFFRNKIKYHAFLRKRCVVNPSKGPYHFRAPSRILWRTIRGMIPHKTARGTAAMERLKLFEGVPPPYDTMKRMVVPAALRVLRLKPGRKYTTVSRLSSEVGWKYEDVVKKLEEKRKVKSKAYYERKKAILNLKAKAAASKAEDLKSINESLAAYGY 202 The following BLAST results are available for this feature:
BLAST of EWM30220.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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