EWM30220.1, cds369 (CDS) Nannochloropsis gaditana

Overview
NameEWM30220.1
Unique Namecds369
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:897501..897812 -
Alignment locationCM002455.1:896892..897221 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30220.1
Product60s ribosomal protein l13a
Orig transcript idgnl|cribi|Naga_100003g126.1737.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:897501..897812 -
CM002455.1supercontigCM002455.1:896892..897221 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR005755Ribosomal_L13_euk/arc
IPR023564Ribosomal_L13_dom
Homology
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|585112879|gb|EWM30220.1| (60s ribosomal protein l13a [Nannochloropsis gaditana])

HSP 1 Score: 436.032 bits (1120), Expect = 8.379e-155
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGYHVAPTPTAERI 213
            MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGYHVAPTPTAERI
Sbjct:    1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGYHVAPTPTAERI 213          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|298714763|emb|CBJ25662.1| (60S ribosomal protein L13a [Ectocarpus siliculosus])

HSP 1 Score: 270.396 bits (690), Expect = 2.072e-89
Identity = 128/196 (65.31%), Postives = 159/196 (81.12%), Query Frame = 0
Query:    8 VVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAA-SELSAVNNVLAGFGY 202
            V +DGRGHLLGRL+S+VAKELL GQKVVVVRCE++ ISG LVRN  +YMQ+ +KR NTNPKRGP+H+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIPAPYD KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H +L+ RLEA+RKIK+EAYY  KK   AAK L ++  A + L+AV  VL  +G+
Sbjct:    6 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKK---AAKQLKDKATAEANLAAVAPVLEEYGF 198          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|156377756|ref|XP_001630812.1| (predicted protein [Nematostella vectensis] >gi|156217840|gb|EDO38749.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 266.544 bits (680), Expect = 7.450e-88
Identity = 120/202 (59.41%), Postives = 155/202 (76.73%), Query Frame = 0
Query:    1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
            M F+ K++VIDG GHLLGRL+S VAK +LSGQ+VVVVRCE++ ISG   RN  +Y+ FLRKRTNT P  GPFH+RAPSRI WRT+RGM+PHKT +G +A+ R+  F+G+P PYD +KR+VVP ALK++RLKPGR+FC L RL+HEVGW ++D++  LE KRK K++ Y++ KK     K  AE   A EL +VN  LAG+GY
Sbjct:    1 MGFE-KQIVIDGAGHLLGRLASTVAKSILSGQRVVVVRCEKICISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKKGTEAMNRMKVFDGVPPPYDKEKRMVVPSALKVIRLKPGRKFCVLGRLSHEVGWKYQDILETLEEKRKAKSKLYFEHKKKVQKLKQTAELNKADELKSVNKTLAGYGY 201          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|635362721|emb|CCI10404.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 263.077 bits (671), Expect = 2.851e-86
Identity = 127/202 (62.87%), Postives = 155/202 (76.73%), Query Frame = 0
Query:    1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
            M F+ K VV+D RGHLLGRL+S++AKELL GQ+VV VRCE L ISG  VRN  ++MQFL KRT TNPK+GP HYRAPSR+LWRTIRGMLPHKT RGA AL RL  F+G+P+PYD +KR+V+P AL+++RLK  RRF  L +LA EVGW H DLVARLEAKRK+K+EAYY++K A     A A +K  +E + +   L  FGY
Sbjct:    1 MVFE-KPVVVDCRGHLLGRLASLIAKELLQGQQVVAVRCEALEISGSHVRNKVKFMQFLNKRTATNPKKGPIHYRAPSRMLWRTIRGMLPHKTARGAAALQRLKAFDGVPSPYDKQKRMVIPDALRVIRLKANRRFTILGQLASEVGWKHGDLVARLEAKRKLKSEAYYKKKLAQKKRMADATKKVVTEHAELKPTLEKFGY 201          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1191052425|ref|XP_020904097.1| (60S ribosomal protein L13a-like [Exaiptasia pallida])

HSP 1 Score: 261.151 bits (666), Expect = 1.628e-85
Identity = 118/198 (59.60%), Postives = 152/198 (76.77%), Query Frame = 0
Query:    5 SKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
            S++++ID  GHLLGRL+S VAK LL GQ+VVVVRCE++ ISG   RN  +Y+ FLRKRTNT P  GPFH+RAPSRI WRT+RGM+PHKT RG +A+ RL  F+G+P PYD +KR+VVP AL+++RLKPGR+FC L RL+HEVGW ++D+++ LE KRK K+  Y+  KK     K  AE+  ASEL +VN VL G+GY
Sbjct:   21 SQQILIDASGHLLGRLASTVAKSLLLGQRVVVVRCEQINISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 218          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|961375754|gb|ALS04621.1| (60S ribosomal protein L13a [Pseudodiaptomus poplesia] >gi|961376180|gb|ALS04834.1| 60S ribosomal protein L13a [Pseudodiaptomus poplesia])

HSP 1 Score: 260.381 bits (664), Expect = 2.215e-85
Identity = 122/203 (60.10%), Postives = 150/203 (73.89%), Query Frame = 0
Query:    3 FDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAK--ALAERKAASELSAVNNVLAGFGYH 203
            F  K +VIDGRGH+LGRLSSIVAK +L+G KVVVVRCE + ISG   RN  +Y+ FLRKR N  P RGPFH+RAP +I WRT+RGM+PHKT RG  AL RL TFEG+P PYD KK++V+P ALK+LRLK GR+FC++ RL HEVGW ++D+VA LEAKRK+K EAYY+ KK    AK   L + K A  ++    V+  FGY 
Sbjct:    4 FSPKPLVIDGRGHMLGRLSSIVAKLILNGNKVVVVRCEGINISGNFYRNKLKYLDFLRKRCNVKPSRGPFHFRAPGKIFWRTVRGMIPHKTERGKAALKRLQTFEGVPPPYDKKKKMVIPSALKVLRLKHGRKFCSVGRLGHEVGWKYQDIVAALEAKRKVKGEAYYKAKKTIAVAKKAVLKDAKVAKRIATHQKVIESFGYQ 206          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1045918774|gb|OCH95815.1| (60S ribosomal protein L13a [Obba rivulosa])

HSP 1 Score: 259.225 bits (661), Expect = 4.487e-85
Identity = 126/202 (62.38%), Postives = 159/202 (78.71%), Query Frame = 0
Query:    2 TFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKR-GPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
            TF S  +VIDG+GHLLGRL+SIVAK++LSGQK+VVVRCEE+ ISG   RN  RY  FL KR   NPK+ GPFH+RAPS+IL+R IRGM+PHKT RGA AL RL  FEG+P PYD KKR+VVP+AL++LRLKPGR++CT+ RL+HEVGWG++D+V RLE KRK+KA+A++++K   TAA  L ++  A   S+  N LA  GY
Sbjct:    3 TFSSTPIVIDGKGHLLGRLASIVAKQILSGQKIVVVRCEEINISGSFFRNKLRYHNFLHKRHIVNPKKSGPFHHRAPSKILYRAIRGMVPHKTARGAAALERLKLFEGVPPPYDRKKRMVVPEALRVLRLKPGRKYCTVKRLSHEVGWGYKDVVDRLEEKRKVKAQAFHERK---TAAIKLRQKAVADTASSFEN-LAQLGY 200          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1149602822|gb|OON09955.1| (ribosomal protein L13 [Batrachochytrium salamandrivorans])

HSP 1 Score: 258.84 bits (660), Expect = 7.511e-85
Identity = 123/198 (62.12%), Postives = 153/198 (77.27%), Query Frame = 0
Query:    5 SKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
             KE+VID +GHLLGRL+SI+AK+LL+GQKVV+VR EE+ +SG   RN  +YM FLRKR   NP+RGPFH+RAPSRI +RT+RGM+PHKT RGA AL RL  FEG+P PYDTKKRVVVP AL++LRL PGR+FCTL RL+ E GW + D+VARLE KRK K   ++Q+K A    +A+A  KAA  L+ V  VLA +G+
Sbjct:    4 EKEIVIDAKGHLLGRLASIIAKQLLNGQKVVLVRSEEINMSGPFFRNKLKYMAFLRKRCVVNPQRGPFHFRAPSRIFYRTVRGMIPHKTPRGAAALERLKVFEGVPPPYDTKKRVVVPAALRVLRLAPGRKFCTLKRLSSEFGWKYNDVVARLEEKRKAKGTLFFQRKTALLRRRAVAVSKAADALAPVTKVLATYGH 201          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|999987002|gb|KXJ26127.1| (60S ribosomal protein L13a [Exaiptasia pallida])

HSP 1 Score: 258.84 bits (660), Expect = 9.571e-85
Identity = 117/196 (59.69%), Postives = 150/196 (76.53%), Query Frame = 0
Query:    7 EVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
            +++ID  GHLLGRL+S VAK LL GQ+VVVVRCE++ ISG   RN  +Y+ FLRKRTNT P  GPFH+RAPSRI WRT+RGM+PHKT RG +A+ RL  F+G+P PYD +KR+VVP AL+++RLKPGR+FC L RL+HEVGW ++D+++ LE KRK K+  Y+  KK     K  AE+  ASEL +VN VL G+GY
Sbjct:    8 QILIDASGHLLGRLASTVAKSLLLGQRVVVVRCEQINISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 203          
BLAST of EWM30220.1 vs. NCBI_GenBank
Match: gi|1183373972|gb|ORX99658.1| (60S ribosomal protein L16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 258.455 bits (659), Expect = 1.190e-84
Identity = 122/202 (60.40%), Postives = 157/202 (77.72%), Query Frame = 0
Query:    1 MTFDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
            M+   K VVIDGRGHLLGRL+SI++K++L+GQKVVVVRCEEL ++G   RN  +Y  FLRKR   NP +GP+H+RAPSRILWRTIRGM+PHKT RG  A+ RL  FEG+P PYDT KR+VVP AL++LRLKPGR++ T+SRL+ EVGW + D+V +LE KRK+K++AYY++KKA    KA A    A +L ++N  LA +GY
Sbjct:    1 MSTFEKVVVIDGRGHLLGRLASIISKQILNGQKVVVVRCEELNVTGSFFRNKIKYHAFLRKRCVVNPSKGPYHFRAPSRILWRTIRGMIPHKTARGTAAMERLKLFEGVPPPYDTMKRMVVPAALRVLRLKPGRKYTTVSRLSSEVGWKYEDVVKKLEEKRKVKSKAYYERKKAILNLKAKAAASKAEDLKSINESLAAYGY 202          
The following BLAST results are available for this feature:
BLAST of EWM30220.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112879|gb|EWM30220.1|8.379e-155100.0060s ribosomal protein l13a [Nannochloropsis gadita... [more]
gi|298714763|emb|CBJ25662.1|2.072e-8965.3160S ribosomal protein L13a [Ectocarpus siliculosus... [more]
gi|156377756|ref|XP_001630812.1|7.450e-8859.41predicted protein [Nematostella vectensis] >gi|156... [more]
gi|635362721|emb|CCI10404.1|2.851e-8662.87unnamed protein product [Albugo candida][more]
gi|1191052425|ref|XP_020904097.1|1.628e-8559.6060S ribosomal protein L13a-like [Exaiptasia pallid... [more]
gi|961375754|gb|ALS04621.1|2.215e-8560.1060S ribosomal protein L13a [Pseudodiaptomus poples... [more]
gi|1045918774|gb|OCH95815.1|4.487e-8562.3860S ribosomal protein L13a [Obba rivulosa][more]
gi|1149602822|gb|OON09955.1|7.511e-8562.12ribosomal protein L13 [Batrachochytrium salamandri... [more]
gi|999987002|gb|KXJ26127.1|9.571e-8559.6960S ribosomal protein L13a [Exaiptasia pallida][more]
gi|1183373972|gb|ORX99658.1|1.190e-8460.4060S ribosomal protein L16 [Basidiobolus meristospo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna369rna369Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications