EWM27011.1, cds3676 (CDS) Nannochloropsis gaditana

Overview
NameEWM27011.1
Unique Namecds3676
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:974109..974726 +
Alignment locationCM002461.1:974863..975018 +
Alignment locationCM002461.1:975249..975387 +
Alignment locationCM002461.1:975525..975664 +
Alignment locationCM002461.1:975859..976131 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27011.1
Productrab gtpase
Orig transcript idgnl|cribi|Naga_100079g21.10200.mrna
GeneRab32B
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:974109..974726 +
CM002461.1supercontigCM002461.1:974863..975018 +
CM002461.1supercontigCM002461.1:975249..975387 +
CM002461.1supercontigCM002461.1:975525..975664 +
CM002461.1supercontigCM002461.1:975859..976131 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR020849Small_GTPase_Ras
IPR002041Ran_GTPase
IPR003578Small_GTPase_Rho
IPR003579Small_GTPase_Rab_type
IPR001806Small_GTPase
Homology
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|585109181|gb|EWM27011.1| (rab gtpase [Nannochloropsis gaditana])

HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query:    1 MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEANRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDEDYEVEETKEECGTFYGGNFTESSSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGSFGFKLSAADVEGTITNPEKARWTIC 441
            MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEANRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDEDYEVEETKEECGTFYGGNFTESSSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGSFGFKLSAADVEGTITNPEKARWTIC
Sbjct:    1 MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEANRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDEDYEVEETKEECGTFYGGNFTESSSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGSFGFKLSAADVEGTITNPEKARWTIC 441          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|299472101|emb|CBN77086.1| (Rab32B, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 230.335 bits (586), Expect = 6.510e-66
Identity = 106/181 (58.56%), Postives = 132/181 (72.93%), Query Frame = 0
Query:  227 VPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKE 407
            VP   CK+LVVGNAKCGK+S+I RFV   F + Y STVGADY  +DV L++GR VRLQLWDIAGQDRF  LTR YF RAKG +VVCD+TRE TF+A+  WK EID W + EG +  +PV L ANKCD+L +  DSF+AGA M   C +  FA W++TSAK G N++TA   LVE A++ ++
Sbjct:  347 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCD--LPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDTAMTSLVEHALEAED 525          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|1214693030|gb|OWZ07471.1| (Rab32/38 family GTPase [Phytophthora megakarya])

HSP 1 Score: 175.252 bits (443), Expect = 2.570e-47
Identity = 91/188 (48.40%), Postives = 119/188 (63.30%), Query Frame = 0
Query:  231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWAR--TEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGS 416
            I K+L+VGNA+CGKTS IRRF Q +F   YVST+GAD++++ +   D   + LQLWDIAGQDRF   TR YF  AKG ++VCD+TR  T +AV +WK EID   +   EG E  IPVV++ANK D+L D   +   G NM     +     W+  SAKSG +V+ AF  L++R M K   L+ EK  S
Sbjct:  119 IMKVLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKLIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGEE--IPVVMVANKSDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGEHVDDAFKCLIDR-MVKDYRLEKEKGKS 303          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|566022167|gb|ETI45078.1| (hypothetical protein F443_10258 [Phytophthora parasitica P1569])

HSP 1 Score: 172.17 bits (435), Expect = 4.512e-46
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query:  231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAM 403
            I K+L+VGNA+CGKTS IRRF Q  F   YVST+GAD++++ +   D   + LQLWDIAGQDRF   TR YF  A+G ++VCD+TR  T +AV +WK EID   +       IPVV++ANK D+L D   +   G NM     +     W+  SAKSG  +  AF  L++R +
Sbjct:  126 IMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLIDRMV 298          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|675168901|ref|XP_008893335.1| (hypothetical protein PPTG_01703 [Phytophthora parasitica INRA-310] >gi|568017418|gb|ETL91595.1| hypothetical protein L917_09863 [Phytophthora parasitica] >gi|568047821|gb|ETM44889.1| hypothetical protein L914_09914 [Phytophthora parasitica] >gi|568106924|gb|ETN21554.1| hypothetical protein PPTG_01703 [Phytophthora parasitica INRA-310] >gi|570325793|gb|ETO73741.1| hypothetical protein F444_10357 [Phytophthora parasitica P1976] >gi|570949638|gb|ETP14895.1| hypothetical protein F441_10195 [Phytophthora parasitica CJ01A1] >gi|570983065|gb|ETP42963.1| hypothetical protein F442_10162 [Phytophthora parasitica P10297] >gi|970636030|gb|KUF80768.1| Ras-related protein Rab-32A [Phytophthora nicotianae] >gi|970650134|gb|KUF89236.1| hypothetical protein AM588_10003037 [Phytophthora nicotianae] >gi|970652084|gb|KUF90808.1| Ras-related protein Rab-32A [Phytophthora nicotianae])

HSP 1 Score: 172.17 bits (435), Expect = 4.856e-46
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query:  231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAM 403
            I K+L+VGNA+CGKTS IRRF Q  F   YVST+GAD++++ +   D   + LQLWDIAGQDRF   TR YF  A+G ++VCD+TR  T +AV +WK EID   +       IPVV++ANK D+L D   +   G NM     +     W+  SAKSG  +  AF  L++R +
Sbjct:  126 IMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLIDRMV 298          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|695433210|ref|XP_009531126.1| (hypothetical protein PHYSODRAFT_513477 [Phytophthora sojae] >gi|348673878|gb|EGZ13697.1| hypothetical protein PHYSODRAFT_513477 [Phytophthora sojae])

HSP 1 Score: 167.933 bits (424), Expect = 6.297e-46
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 0
Query:  233 KLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVER-AMDKKEVLDIEKK 414
            K+L+VGNA+CGKTS IRRF Q  F   YVST+GAD++++ +   +   + LQLWDIAGQDRF   TR YF  AKG ++VCD+TR  T +AV +WK EID   +       IPVV++ANK D+L D   +   G NM     + K   W+  SAKSG ++  AF  L++R  +D +   ++EK+
Sbjct:    2 KVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDEHLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNKIVEWFRASAKSGEHIGDAFQCLIDRMVVDLRAEKEVEKE 184          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|953500495|emb|CEG38204.1| (ras-related protein rab-38-like [Plasmopara halstedii])

HSP 1 Score: 171.014 bits (432), Expect = 8.337e-46
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 0
Query:  231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWAR--TEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
            I K+LVVGNA+CGKTS IRRF Q  F   YVST+G D++++ +       + LQLWDIAGQDRF  LTR YF  A+G ++VCD+TR  T +AV +WK EI    +   EG+E  IPVV+IANK D+L D   +   G NM     +     W+  SAKSG  +  AF  L++R +D
Sbjct:  114 IMKVLVVGNARCGKTSTIRRFAQDEFNEEYVSTIGVDFMEKVIPYDASLTINLQLWDIAGQDRFAKLTRGYFREARGAVIVCDITRVNTIDAVMNWKNEISTCCKDSNEGKE--IPVVVIANKSDLLVDPMGALDLGVNMQKCIDQNNIVEWFRASAKSGERITDAFSCLIDRMVD 287          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|567959482|gb|ETK85053.1| (hypothetical protein L915_10033 [Phytophthora parasitica] >gi|567988194|gb|ETL38475.1| hypothetical protein L916_09940 [Phytophthora parasitica])

HSP 1 Score: 171.4 bits (433), Expect = 8.618e-46
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query:  231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAM 403
            I K+L+VGNA+CGKTS IRRF Q  F   YVST+GAD++++ +   D   + LQLWDIAGQDRF   TR YF  A+G ++VCD+TR  T +AV +WK EID   +       IPVV++ANK D+L D   +   G NM     +     W+  SAKSG  +  AF  L++R +
Sbjct:  128 IMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLIDRMV 300          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|301108157|ref|XP_002903160.1| (Rab32/38 family GTPase, putative [Phytophthora infestans T30-4] >gi|262097532|gb|EEY55584.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 165.622 bits (418), Expect = 4.029e-45
Identity = 78/172 (45.35%), Postives = 107/172 (62.21%), Query Frame = 0
Query:  233 KLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
            K+L+VGNA+CGKTS IRRF Q +F   YVST+GAD++++ +   +   + LQLWDIAGQDRF   TR YF  A+G ++VCD+TR  T +AV +WK EID   +       IPVV++ANK D+L D   +   G NM     +     W+  SAKSG  +  AF  L+ R ++
Sbjct:    2 KVLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKIIAYDEQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLINRMVN 173          
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|301108333|ref|XP_002903248.1| (Rab32/38 family GTPase, putative [Phytophthora infestans T30-4] >gi|262097620|gb|EEY55672.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 164.851 bits (416), Expect = 8.537e-45
Identity = 78/172 (45.35%), Postives = 106/172 (61.63%), Query Frame = 0
Query:  233 KLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
            K+L+VGNA+CGKTS IRRF Q  F   YVST+GAD++++ +   +   + LQLWDIAGQDRF   TR YF  A+G ++VCD+TR  T +AV +WK EID   +       IPVV++ANK D+L D   +   G NM     +     W+  SAKSG  +  AF  L+ R ++
Sbjct:    2 KVLIVGNARCGKTSTIRRFTQDKFNEEYVSTIGADFVEKIIAYDEQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLINRMVN 173          
The following BLAST results are available for this feature:
BLAST of EWM27011.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109181|gb|EWM27011.1|0.000e+0100.00rab gtpase [Nannochloropsis gaditana][more]
gi|299472101|emb|CBN77086.1|6.510e-6658.56Rab32B, RAB family GTPase [Ectocarpus siliculosus][more]
gi|1214693030|gb|OWZ07471.1|2.570e-4748.40Rab32/38 family GTPase [Phytophthora megakarya][more]
gi|566022167|gb|ETI45078.1|4.512e-4646.24hypothetical protein F443_10258 [Phytophthora para... [more]
gi|675168901|ref|XP_008893335.1|4.856e-4646.24hypothetical protein PPTG_01703 [Phytophthora para... [more]
gi|695433210|ref|XP_009531126.1|6.297e-4645.36hypothetical protein PHYSODRAFT_513477 [Phytophtho... [more]
gi|953500495|emb|CEG38204.1|8.337e-4647.73ras-related protein rab-38-like [Plasmopara halste... [more]
gi|567959482|gb|ETK85053.1|8.618e-4646.24hypothetical protein L915_10033 [Phytophthora para... [more]
gi|301108157|ref|XP_002903160.1|4.029e-4545.35Rab32/38 family GTPase, putative [Phytophthora inf... [more]
gi|301108333|ref|XP_002903248.1|8.537e-4545.35Rab32/38 family GTPase, putative [Phytophthora inf... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3685rna3685Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications