EWM27013.1, cds3675 (CDS) Nannochloropsis gaditana

Overview
NameEWM27013.1
Unique Namecds3675
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:970335..970548 +
Alignment locationCM002461.1:970714..971423 +
Alignment locationCM002461.1:971582..972541 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27013.1
Productwhite
Orig transcript idgnl|cribi|Naga_100079g18.10202.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:970335..970548 +
CM002461.1supercontigCM002461.1:970714..971423 +
CM002461.1supercontigCM002461.1:971582..972541 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR017871ABC_transporter_CS
IPR027417P-loop_NTPase
IPR003439ABC_transporter-like
IPR013525ABC_2_trans
IPR003593AAA+_ATPase
Homology
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana])

HSP 1 Score: 1293.1 bits (3345), Expect = 0.000e+0
Identity = 627/627 (100.00%), Postives = 627/627 (100.00%), Query Frame = 0
Query:    1 MCMSCVEQGVMPVQKELSDLEHGPANAAGSVAMEKALPQTPMEGRKGEDHVLDFNVSNFSTPKGKQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAKPGAEVQGKTAVWIVENFAKRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYATSL 627
            MCMSCVEQGVMPVQKELSDLEHGPANAAGSVAMEKALPQTPMEGRKGEDHVLDFNVSNFSTPKGKQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAKPGAEVQGKTAVWIVENFAKRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYATSL
Sbjct:    1 MCMSCVEQGVMPVQKELSDLEHGPANAAGSVAMEKALPQTPMEGRKGEDHVLDFNVSNFSTPKGKQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAKPGAEVQGKTAVWIVENFAKRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYATSL 627          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 486.108 bits (1250), Expect = 7.000e-161
Identity = 267/601 (44.43%), Postives = 374/601 (62.23%), Query Frame = 0
Query:   51 VLDFNVSNFSTPKGKQ----ILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAK--------PG-------AEVQGKTAVWIVENFA--------KRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQ-AHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRY 623
            VL++N+S +     K+    +L  IAGR   G F A+MGPSG GKT+L+ C+ALR R FEG++ ++G++    YF  TGYVHQKELFF  LT REHLVFHA+N L    + ++C+ RV+ V+ EV+L +  D  IGGG+  LV G+SGGERKRL+I TELL +P+I+ LDEPTSGLDSVMGELV  LL ++A      PRR+++  IHTPSSR+++  SHV LL + G +AY G R+ L  + + LGY  P  +NPADF LE+ SAK        PG       A     +   +VE+ +        K     +  P   N+     V   G   + + +  + N+WR+     R+   L   V M   LG+VFG+L+  Q  H + RN  G +F+L+V +LI  S+ V + FP +++I MREYY G N+   YF+GRT+A  P    F+++ I+PY+M GL  S  +F  YC +FF++   + S GYLASSFSA+PV+GL+I P+  TPMILFSGMLYER+SVP  L+WIQ+ISV+NY FA +V+N+   + DGP R  ++ FLQI    F   +  L  L++ YR A+  VL +R+++
Sbjct:   74 VLEWNISKYEIKLKKRKSLTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAV---QAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHI-DGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVKF 670          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585106190|gb|EWM24668.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 473.011 bits (1216), Expect = 9.961e-158
Identity = 248/548 (45.26%), Postives = 350/548 (63.87%), Query Frame = 0
Query:   84 MGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGE-FALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAKPGA---EVQGKTAVWIVENFAKRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGT--LYALVGMLLILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYAT 625
            MGPSGAGKTTL++CI+LR R FEGA+H D R P  ++FT +  VHQKEL F  +T REHL+FHAI R+   +T +Q   RV+EV+ EV+L +CADTI+GG +   + KGLSGGERKRLSI  ELL  P++IFLDEP+SGLDSVM E +   L  L         R+++  +H PSS M   F+HVLLL   G +AYHG ++A   YF SL Y  P NYNP+DF L+++SA PGA   + + +    +    A  M +   L P+  H  F  V    G  + + L  K+N+WRA  Q  RD  T  L+ LV  L+  G +FG+L+  QA S+WRNL+G++F++VVA L   S+ V ++FP++W+I +REY++G+NA+GPY + R I D P      LL+ + YWM+G+ +    F+ +   F      S S G   SSFSA+P +GL I P    PMI+FSG+LYERSSVP +L W+Q +S+VNY F+AL+I + + L   P+  LV+ F++++    G  IG L+ +  G++  +++ L LR+R+AT
Sbjct:    1 MGPSGAGKTTLLECISLRNRKFEGAVHYDNRGPTGEFFTCSVLVHQKELLFGFMTPREHLLFHAIARMSKNHTIEQINARVEEVLQEVKLEKCADTIVGGTDPIYMRKGLSGGERKRLSIAAELLLAPQLIFLDEPSSGLDSVMSESIFGTLKDLTQSG-----RIVVASVHCPSSEMCQQFTHVLLLTFDGRLAYHGRQDAAIRYFSSLSYQCPENYNPSDFYLKLISATPGADPAQEKARMNQLVAAYNASDMVRKTPLAPDETHKQFQMVF---GHASSWTL-FKINLWRAFIQLQRDWVTFVLWGLVSALV--GGLFGILYWQQARSNWRNLLGLLFSVVVANLFTSSLAVMMRFPLDWAIVVREYFSGSNAIGPYLVARFIVDAPMGYGPFLLITLLYWMTGMDSDIGKFVIFALTFISGNWASTSMGQYVSSFSANPFIGLTILPAFVAPMIMFSGILYERSSVPAWLSWLQTLSIVNYSFSALMIQQIHILPK-PLALLVMQFVELNPDTMGWDIGMLWIMNFGFQILTYINLSLRLRFAT 536          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585108726|gb|EWM26638.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 442.195 bits (1136), Expect = 7.439e-145
Identity = 234/587 (39.86%), Postives = 360/587 (61.33%), Query Frame = 0
Query:   47 GEDHVLDFNVSNFSTPKGKQ-----ILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGE-FALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAKPGAEVQGKTAVWIVENFAKRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGML-LILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYATS 626
            G  H L+++V  +  P GK+     IL  IAG+T +G+ TA+MGPSG GKTTL++CI+LR R F+GA+H DGR+P  D FT +  VHQKEL F  +T RE+L FH + R+   +T+ Q  +R+ EV+++++L +CADT++GG + F   KGLSGGERKRL+I  E+L  P +IFLDEP+SGLDSVM E +   L  LA G      R+++  +H PSS     FSH++LL   G +AYHG       YF +L Y  P +YNPADF L+++S  PGAE +G+     + N A +      + P    +   G+A   G  A      K+N WRA  +  RDK T   L G++  I+G++ G+++L QA +SWRNL+G++F+LVVA + + S+ V ++FP EW+I +RE Y+G NA+GPY        +P      LLV V YWM+G+  +F +++++  I+          G   SS S +P++G+ I P    PMI+FSG+LY++S+VP++L W+ ++S++NY F+AL+  + + L +     L+  F+ ++    G  + +L+ ++      ++  L +R+R AT+
Sbjct:   21 GIRHTLEWHVEAYMVPAGKKGEFRNILQGIAGKTESGQLTAIMGPSGCGKTTLLECISLRNRRFDGAVHFDGRAPGGDAFTVSVLVHQKELLFGFMTPREYLTFHGLARMEHTHTRAQIDQRIQEVLSDMKLEKCADTLVGGTDPFFQKKGLSGGERKRLAIAYEMLLAPSMIFLDEPSSGLDSVMSESIFQSLKDLADGG-----RIVLASVHCPSSEACQLFSHLMLLTYDGRVAYHGPTLQGIGYFSALKYFCPEHYNPADFYLKLISFTPGAEAEGEVQRMDLLNDAFQKSDMRLMKPLPTDNKHRGLAGVHGIKASTFTFLKLNFWRATLRLRRDK-TFVVLWGIISFIVGLLLGIIYLQQAPASWRNLLGLLFSLVVADIFMGSLGVIMRFPSEWAIIVRECYSGVNAVGPYLFASFWGILPMAYGPFLLVTVMYWMTGMDPNFVAYLKFAGIYLSFDIACLELGQFVSSLSGNPMVGMTILPAFVAPMIMFSGVLYQKSTVPVWLSWMHHVSLINYSFSALMAEQIHILPENQAN-LLAAFIDLNKNSAGLNVLYLWIMSAALLLLTYFTLTVRLRNATA 600          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585110259|gb|EWM27919.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 421.779 bits (1083), Expect = 2.816e-136
Identity = 231/592 (39.02%), Postives = 350/592 (59.12%), Query Frame = 0
Query:   67 ILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGG--------------------------KYTKDQCMKRVDEVINEVELARCADTIIGGGEFAL-VKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKS-LGYDVPPNYNPADFALEVVSAKPGAEVQGKTAVWIVENFA---KRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYATSL 627
            IL  +AG  V+GE TA++GPSGAGKTTL++CI+LR R+F+G +  DG++P+  +FT + +VHQ ++ +  LT REHL FHAI R+ G                          K + +   +RV+EVI  V+L +CADT+IGG +    VKG+SGGERKRL+I TELL   +IIFLDEP+SGLDSVM E +   L  L T       R+++  +H PSS+ +  FS+++LL   G +AY G       YF++ LG + P +YNPADF LE+VSA+PG  +Q +       + A     M+  N LP +  H     V    G GA   +  K+N+WR   Q +RD+ TL     +  ++G +FG+L+   A S+WRNLMG++F+ VV  +    + V ++FP+EW++ +RE+ +GANA+GPY I R    +P     +L+  + YW +G+     +++ +  IF        S G   SSFSA+P++ + I P   TPMI+FSG+L ERSSVP++L WI+++SVVNY F  L+  + + L  G    +V  F+Q +    G  +G L+ L   ++  +++ L++R+R + S+
Sbjct:   61 ILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSRTAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQG-----RIVIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAEPGVPLQEELRRMDALSLAYAQSFMKIQNPLPADDKHKALHDVR---GQGASDWVFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHIL-PGNQGEVVQQFIQFNPRKMGWNVGMLWILTAAFQVLTYVNLRVRLRASRSV 643          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|553189117|ref|XP_005854935.1| (atp-binding cassette [Nannochloropsis gaditana CCMP526] >gi|422294123|gb|EKU21423.1| atp-binding cassette [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 421.394 bits (1082), Expect = 3.102e-136
Identity = 231/592 (39.02%), Postives = 350/592 (59.12%), Query Frame = 0
Query:   67 ILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGG--------------------------KYTKDQCMKRVDEVINEVELARCADTIIGGGEFAL-VKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKS-LGYDVPPNYNPADFALEVVSAKPGAEVQGKTAVWIVENFA---KRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYATSL 627
            IL  +AG  V+GE TA++GPSGAGKTTL++CI+LR R+F+G +  DG++P+  +FT + +VHQ ++ +  LT REHL FHAI R+ G                          K + +   +RV+EVI  V+L +CADT+IGG +    VKG+SGGERKRL+I TELL   +IIFLDEP+SGLDSVM E +   L  L T       R+++  +H PSS+ +  FS+++LL   G +AY G       YF++ LG + P +YNPADF LE+VSA+PG  +Q +       + A     M+  N LP +  H     V    G GA   +  K+N+WR   Q +RD+ TL     +  ++G +FG+L+   A S+WRNLMG++F+ VV  +    + V ++FP+EW++ +RE+ +GANA+GPY I R    +P     +L+  + YW +G+     +++ +  IF        S G   SSFSA+P++ + I P   TPMI+FSG+L ERSSVP++L WI+++SVVNY F  L+  + + L  G    +V  F+Q +    G  +G L+ L   ++  +++ L++R+R + S+
Sbjct:   61 ILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSRTAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQG-----RIVIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAEPGVPLQEELRRMDALSLAYAQSFMKIQNPLPADDKHKALHDVR---GQGASDWVFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHIL-PGNQGEVVQQFIQFNPRKMGWNVGMLWILTAAFQVLTYVNLRVRLRASRSV 643          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585109266|gb|EWM27089.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 421.009 bits (1081), Expect = 4.032e-136
Identity = 241/578 (41.70%), Postives = 354/578 (61.25%), Query Frame = 0
Query:   65 KQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGG-GEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKS-LGYDVPPNYNPADFALEVVSAKPGA-----EVQGKTAVWIVENFA----------KRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLL-ILGMVFGLLFLNQAHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYA 624
            K IL D+AG++V GE TA+MG SGAGKTTL++C+ALR R F+G +  +G + + DYFT +  VHQ+E+    LT  EHL+FH   R+  +++  +   RV  VI +V L++C  T++GG G     KGLSGGERKRL+I TELL  P+ IFLDEPT+ LDSVM   V  LL  LA  +    R ++M  IH PSS+++S FSHVLLL   G +A+HGT      Y  S L   +P  YNPAD  + +V +KPG      E + K   W+V++FA          +R    ++   E +H +  GV    G  A      ++N+ R + Q+SR+  + + L GM++ ++G+ FG L+  QA SSWRNL+G+++ALVVA+L +C + V L+ P++W + +REY+ GANA GPY + + + ++PF    LLLV   YWM+GLT S A+F+++  +  L    S +   +  S SA+P+L L I P   TPM+LFSG LY+ +++P YL W+  IS+VNYGFAAL+  +  SL    +R + L F+ +D    GA +  L G+ + +   +++ L LR+R A
Sbjct:   67 KSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSR----RILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSKPGGGASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKACEENSHRSLRGVQ---GQHASAWTLFRLNLRRGLLQTSRNSLSFW-LYGMVMGVIGLCFGTLYFQQAASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQ-QSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLRTA 635          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585110513|gb|EWM28168.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 355.525 bits (911), Expect = 3.690e-110
Identity = 212/593 (35.75%), Postives = 324/593 (54.64%), Query Frame = 0
Query:   44 GRKGEDHVLDFNVSNFSTPKGKQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKS-LGYDVPPNYNPADFALE-----VVSAKPGAEVQGKTAVWIVENFAKRMEKFNRLPPET--NHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQA--HSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALF-LLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGP-MRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYA 624
            G +G       N S  S    + IL+++ G    G+  ALMG SGAGK++L+DCI+LR   FEG +++D     + +F+ + YVHQ +LFF++LT REHL FHA+ R+  +      ++RV+EVI+ V L + AD++IGG + A ++G+SGGERKRLS+ TELLS P+IIF DEPTSGLD+ M   V  +L  LA        R++ CVIH PSS ++  F+H++LLA G   AY GTR     YF S LG + P  YNPAD+ +E     V+  KP   V+    V+     A+  E +     ET  +      + +S    A    Q   +  R V    R+       +G  + +G++ GL++L Q    S+ +N +G MF L++   I     V+   P + ++FMREY T AN    YF+G ++A++P+  LF  +   + YW+ G     + F  +     L+ N S S GY  S+ +    + +A+ PV+  PM L++G+L+    VP Y   +  +S++ Y F A+V+NE  S    P +R  V  ++ +  G  G CI  L  L  G+RF +++ L +R + A
Sbjct:   98 GGRGTTRGTSINESLGSKTAERHILYNVVGHAEKGQMLALMGASGAGKSSLLDCISLRNHRFEGCVYLDRNPVDTHFFSTSAYVHQVDLFFATLTVREHLTFHAMVRVKQEVPIADRLRRVEEVIDAVNLTKVADSLIGGPQ-AFIRGVSGGERKRLSVATELLSDPEIIFADEPTSGLDAFMALSVCKILKGLADSG-----RLVACVIHQPSSEIFELFTHLMLLARGQ-TAYFGTRAGGVEYFASMLGLECPQFYNPADYLIEKLAVNVLLEKPEVAVEDMLRVYQSSELARDNEAWMADVEETAGSGMGVAALVSSREFPATSWTQFVESYKRTVKSYGREPVLAKVRLGQAISMGLILGLVYLQQPFDSSATKNRLGAMFLLIMNQSIASMFTVSQVIPKDMAVFMREYLTSANRPSSYFLGLSLAEVPYQVLFPCIFGSIAYWLIGFAPEASRFFIFIVTLVLMANASCSLGYALSTLTGHDGVAVALGPVLMLPMSLYAGVLHSSDHVPWYFVPLDKVSMIKYAFQAIVLNEYGSDKYTPQLRNFVFEYIGVQEGQIGFCIAMLVVLLFGFRFLAYVFLLIRAKRA 683          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|553179694|ref|XP_005852746.1| (abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422295790|gb|EKU23089.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 353.599 bits (906), Expect = 9.074e-109
Identity = 211/593 (35.58%), Postives = 324/593 (54.64%), Query Frame = 0
Query:   44 GRKGEDHVLDFNVSNFSTPKGKQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKS-LGYDVPPNYNPADFALE-----VVSAKPGAEVQGKTAVWIVENFAKRMEKFNRLPPET--NHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQA--HSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALF-LLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGP-MRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRYA 624
            G +G       N S  S    + IL+++ G    G+  ALMG SGAGK++L+DCI+LR   F+G +++D     + +F+ + YVHQ +LFF++LT REHL FHA+ R+  +      ++RV+EVI+ V L + AD++IGG + A ++G+SGGERKRLS+ TELLS P+IIF DEPTSGLD+ M   V  +L  LA        R++ CVIH PSS ++  F+H++LLA G   AY GTR     YF S LG + P  YNPAD+ +E     V+  KP   V+    V+     A+  E +     ET  +      + +S    A    Q   +  R V    R+       +G  + +G++ GL++L Q    S+ +N +G MF L++   I     V+   P + ++FMREY T AN    YF+G ++A++P+  LF  +   + YW+ G     + F  +     L+ N S S GY  S+ +    + +A+ PV+  PM L++G+L+    VP Y   +  +S++ Y F A+V+NE  S    P +R  V  ++ +  G  G CI  L  L  G+RF +++ L +R + A
Sbjct:  166 GGRGTTRGTSINESLGSKTAERHILYNVVGHAEKGQMLALMGASGAGKSSLLDCISLRNHRFDGCVYLDRNPVDTHFFSTSAYVHQVDLFFATLTVREHLTFHAMVRVKQEVPIADRLRRVEEVIDAVNLTKVADSLIGGPQ-AFIRGVSGGERKRLSVATELLSDPEIIFADEPTSGLDAFMALSVCKILKGLADSG-----RLVACVIHQPSSEIFELFTHLMLLARGQ-TAYFGTRAGGVEYFASMLGLECPQFYNPADYLIEKLAVNVLLEKPEVAVEDMLRVYQSSELARDNEAWMADVEETAGSGMGVAALVSSREFPATSWTQFVESYKRTVKSYGREPVLAKVRLGQAISMGLILGLVYLQQPFDSSATKNRLGAMFLLIMNQSIASMFTVSQVIPKDMAVFMREYLTSANRPSSYFLGLSLAEVPYQVLFPCIFGSIAYWLIGFAPEASRFFIFIVTLVLMANASCSLGYALSTLTGHDGVAVALGPVLMLPMSLYAGVLHSSDHVPWYFVPLDKVSMIKYAFQAIVLNEYGSDKYTPQLRNFVFEYIGVQEGQIGFCIAMLVVLLFGFRFLAYVFLLIRAKRA 751          
BLAST of EWM27013.1 vs. NCBI_GenBank
Match: gi|585102296|gb|EWM21944.1| (white [Nannochloropsis gaditana])

HSP 1 Score: 337.806 bits (865), Expect = 6.496e-104
Identity = 206/580 (35.52%), Postives = 322/580 (55.52%), Query Frame = 0
Query:   65 KQILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALA-TGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAKPG------AEVQGKTAVWIVENFAKRMEKF-NRLPPE--TNHHTFTGVATSGGTGAGYLLQTKMNIW----RAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQ--AHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALF-LLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINE-------CNSLGDGPMRW--LVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLK 618
            K IL  + G   +G   ALMG SGAGK++L+DCI+LR + FEG + VDG+   + +F  T YV+Q +LFF +LT REHL FHA+ R+          +RV+ ++ +V L  C+D +IGG   +L++G+SGGERKR+++ TELLS+P I+FLDEPTSGLDS M E V  LL  LA TGK      +++CVIH PSS  +  F+H+ LLA G  MAY G       YF +LG+  PPN+NPADF +E ++  P       A ++  T  +   +  K+ EK+ +++ P   +     TG+A +      Y        W    R + Q  R+     A +   +++G++ GL++ +Q   + + +N +G+ F + +   I  +  V  + P ++++FMREY  GAN +  YF+ RT+++IPF  LF L+   + Y M GL  +  ++I +C +  L  N + S GY  S+   +    +A   V+  PM LFSG+L +  ++  +L+ +Q +S++ Y + A++INE       C      P R    VL ++          +G LF   L +R  +F+ LK
Sbjct:   67 KTILEGVTGSVRSGNMMALMGASGAGKSSLLDCISLRNQKFEGNVFVDGKPADNAFFGLTAYVYQDDLFFPTLTVREHLRFHAMVRMPKTVQPHIKAERVESILLDVGLQGCSDALIGGAS-SLIRGISGGERKRVAVATELLSNPAILFLDEPTSGLDSFMAEAVCTLLRKLANTGK------IVVCVIHQPSSDTFKLFTHLCLLAKGR-MAYLGELPKAVDYFAALGHACPPNFNPADFFIEELAVVPSDYEKSMARLRVVTDAYQDSDLRKQNEKWLSKVDPAVLSKPRRRTGIAIT-----EYPATADTQFWESCRRTILQYKREPVLTRARLVNSILMGVLLGLVYFDQDTTYKAVQNKIGVAFIVTMNQCISATFGVVQEVPRDFAVFMREYLAGANRVSSYFLARTLSEIPFQILFPLVFGSIVYGMVGLRPTAGAYITFCLVLILCANTAVSMGYALSAVFRNTTAAIAAGSVVIMPMALFSGLLLDMDNIAPWLRPLQFLSIIRYTYHAIIINEYANQPINCGFNVICPFRTGNAVLTYVGAAPDELSFNMGMLFVFMLCFRLVAFMALK 633          
The following BLAST results are available for this feature:
BLAST of EWM27013.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109183|gb|EWM27013.1|0.000e+0100.00white [Nannochloropsis gaditana][more]
gi|585106124|gb|EWM24607.1|7.000e-16144.43abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585106190|gb|EWM24668.1|9.961e-15845.26abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585108726|gb|EWM26638.1|7.439e-14539.86abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585110259|gb|EWM27919.1|2.816e-13639.02abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553189117|ref|XP_005854935.1|3.102e-13639.02atp-binding cassette [Nannochloropsis gaditana CCM... [more]
gi|585109266|gb|EWM27089.1|4.032e-13641.70abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585110513|gb|EWM28168.1|3.690e-11035.75abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553179694|ref|XP_005852746.1|9.074e-10935.58abc subfamily abcg, partial [Nannochloropsis gadit... [more]
gi|585102296|gb|EWM21944.1|6.496e-10435.52white [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3684rna3684Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications