EWM27024.1, cds3652 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27024.1
Unique Name	cds3652
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002461.1:908712..912359 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27024.1
Product	U2 snrnp-associated splicing factor putative
Orig transcript id	gnl\|cribi\|Naga_100309g2.7058.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:908712..912359 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait
IPR006569	CID_dom
IPR000504	RRM_dom
IPR000061	Surp

Homology

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BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|585109196|gb|EWM27024.1| (U2 snrnp-associated splicing factor putative [Nannochloropsis gaditana])

HSP 1 Score: 2397.47 bits (6212), Expect = 0.000e+0
Identity = 1215/1215 (100.00%), Postives = 1215/1215 (100.00%), Query Frame = 0

Query:    1 MSANNNAKPAVKKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALHAASGPEEEGRSLKGSGRRGGDGGLPGAGLTTALQAGSGPAGAEGEATGRLVAADSAAAGLGQGSSVRPPTSTSSSASSPPSSLSSNPLEEALRRATSISSRVVQEPSRLDDGEDEGRGRRGGRYGRSRSRSPEGEPGRRKEGEEEEKEPGPGDVVLPVLFPEDKDVEFLISRTARYVAKDGGPLEERLKVTESQNPRFRFLWEGDSPEALFYRWRVFSFLMGDTETRWRVRPFQMTVDGPFWAPPAIPGAWRDRREVKEEAKEEKTSDYGERGREKGRDRGRSRSPERKKEAGKRGRSRSRGRDRRQSRSRERERGGRHESRSRSRERSRSRERGRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAFHNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAAGENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAAPLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSEGEDVDGRPLDLSPLPSGARAPGQSTRPGDRSGRAKGADKAKKRGRTGEATYSSSSSDDDEDGGRTISIGQALGTGPLGQEELDRRPHSHGKYQQKPPPQWTAQEEEARRAMLRSLETGLLHFRDDLEAKGENVESIEAAVQERRQAMVSTWETQTLAQRKGLGVATAVAVERSAVITSRGKGKVDALGAGRGSGEERQAKRKR 1215
            MSANNNAKPAVKKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALHAASGPEEEGRSLKGSGRRGGDGGLPGAGLTTALQAGSGPAGAEGEATGRLVAADSAAAGLGQGSSVRPPTSTSSSASSPPSSLSSNPLEEALRRATSISSRVVQEPSRLDDGEDEGRGRRGGRYGRSRSRSPEGEPGRRKEGEEEEKEPGPGDVVLPVLFPEDKDVEFLISRTARYVAKDGGPLEERLKVTESQNPRFRFLWEGDSPEALFYRWRVFSFLMGDTETRWRVRPFQMTVDGPFWAPPAIPGAWRDRREVKEEAKEEKTSDYGERGREKGRDRGRSRSPERKKEAGKRGRSRSRGRDRRQSRSRERERGGRHESRSRSRERSRSRERGRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAFHNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAAGENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAAPLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSEGEDVDGRPLDLSPLPSGARAPGQSTRPGDRSGRAKGADKAKKRGRTGEATYSSSSSDDDEDGGRTISIGQALGTGPLGQEELDRRPHSHGKYQQKPPPQWTAQEEEARRAMLRSLETGLLHFRDDLEAKGENVESIEAAVQERRQAMVSTWETQTLAQRKGLGVATAVAVERSAVITSRGKGKVDALGAGRGSGEERQAKRKR
Sbjct:    1 MSANNNAKPAVKKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALHAASGPEEEGRSLKGSGRRGGDGGLPGAGLTTALQAGSGPAGAEGEATGRLVAADSAAAGLGQGSSVRPPTSTSSSASSPPSSLSSNPLEEALRRATSISSRVVQEPSRLDDGEDEGRGRRGGRYGRSRSRSPEGEPGRRKEGEEEEKEPGPGDVVLPVLFPEDKDVEFLISRTARYVAKDGGPLEERLKVTESQNPRFRFLWEGDSPEALFYRWRVFSFLMGDTETRWRVRPFQMTVDGPFWAPPAIPGAWRDRREVKEEAKEEKTSDYGERGREKGRDRGRSRSPERKKEAGKRGRSRSRGRDRRQSRSRERERGGRHESRSRSRERSRSRERGRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAFHNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAAGENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAAPLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSEGEDVDGRPLDLSPLPSGARAPGQSTRPGDRSGRAKGADKAKKRGRTGEATYSSSSSDDDEDGGRTISIGQALGTGPLGQEELDRRPHSHGKYQQKPPPQWTAQEEEARRAMLRSLETGLLHFRDDLEAKGENVESIEAAVQERRQAMVSTWETQTLAQRKGLGVATAVAVERSAVITSRGKGKVDALGAGRGSGEERQAKRKR 1215

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BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|553186523|ref|XP_005854434.1| (U2-associated protein SR140, partial [Nannochloropsis gaditana CCMP526] >gi|422294624|gb|EKU21924.1| U2-associated protein SR140, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0
Identity = 386/387 (99.74%), Postives = 386/387 (99.74%), Query Frame = 0

Query:    1 MSANNNAKPAVKKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALHAASGPEEEGRSLKGSGRRGGDGGLPGAGLTTALQAGSGPAGAEGEATGRLVAADSAAAGLGQGSSVRPPTSTSSSASSPPSS 387
            MSANNNAKPAVKKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALHAASGPEEEGRSLKGSGRRGGDGGLPGAGLTTALQAGSGPAGAEGEATGRLVAADSAAAGL QGSSVRPPTSTSSSASSPPSS
Sbjct:    1 MSANNNAKPAVKKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALHAASGPEEEGRSLKGSGRRGGDGGLPGAGLTTALQAGSGPAGAEGEATGRLVAADSAAAGLEQGSSVRPPTSTSSSASSPPSS 387

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|553183177|ref|XP_005853853.1| (U2-associated protein SR140, partial [Nannochloropsis gaditana CCMP526] >gi|553186526|ref|XP_005854435.1| U2-associated protein SR140, partial [Nannochloropsis gaditana CCMP526] >gi|422294625|gb|EKU21925.1| U2-associated protein SR140, partial [Nannochloropsis gaditana CCMP526] >gi|422295207|gb|EKU22506.1| U2-associated protein SR140, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 523.857 bits (1348), Expect = 1.597e-174
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0

Query:  686 AFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAFHNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAAGENRLEGGRWTGGDTRGGRGARGG 947
            AFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAFHNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAAGENRLEGGRWTGGDTRGGRGARGG
Sbjct:    1 AFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAFHNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAAGENRLEGGRWTGGDTRGGRGARGG 262

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BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|301110582|ref|XP_002904371.1| (U2-associated splicing factor, putative [Phytophthora infestans T30-4] >gi|262096497|gb|EEY54549.1| U2-associated splicing factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 190.274 bits (482), Expect = 9.736e-46
Identity = 123/294 (41.84%), Postives = 157/294 (53.40%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLPPSALH 305
            KKT+F KE+E+REA+KRQ D EAAKIY  FVASFD  D     GK FVR+   + +G+S                 ++P        L     AA  S T    ++  +          +R     ++           +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P    PGL LP + LH
Sbjct:   28 KKTKFQKEREDREAKKRQADEEAAKIYATFVASFDNEDETK--GKAFVRSGTQAAQGNS-----------------ELPTQSGDVYRLKGKEQAAPFSATRKKVSEMDQMLQQIKQKDADRREEAQTT-----------HKPKKRRAIDEFLEEMKERGPAPVSMEGVGLAKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYERRDADDARVNLDNKQLEGQPMIVGWGKAVK----------IQPRGSAPGLLLPSAVLH 281

HSP 2 Score: 97.0561 bits (240), Expect = 1.068e-16
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 0

Query:  457 GDVVLPVLFPEDKDVEFLISRTARYVAKDGGPLEERLKVTESQNPRFRFLWEGDSPEALFYRWRVFSFLMGDTETRWRVRPFQMTVDGPFWAPPAI 552
            G   + +  P D++    +   A YVA DG   E  +++ E+ N  + F +E  S  AL+YRWRV+SF MGD E  WR +PFQMT+DGP W PP +
Sbjct:  301 GKQTIAIDIPTDQEARRRVDHLAHYVAADGLQFENAVRMREANNSAYSFFFEPQSALALYYRWRVYSFAMGDDEYTWREKPFQMTLDGPVWVPPKM 396

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|970652044|gb|KUF90776.1| (U2 snRNP-associated SURP motif-containing protein [Phytophthora nicotianae])

HSP 1 Score: 186.422 bits (472), Expect = 1.437e-44
Identity = 125/300 (41.67%), Postives = 160/300 (53.33%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLP---PSALHAAS 308
            KKT+F KE+E+REA+KRQ D EAA+IY  FVASFD  D     GK FVR   G  + + G  ++ +        Q +    L  K  +A              ++ S +  S     L             L     + +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P A  PGL LP   P+ L  A+
Sbjct:   28 KKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTK--GKAFVR---GGTQAAQGHSQSAV--------QSRDVYRLKGKEQVA--------------SSSSGKKVSEMDKLLQEIKQKDAEQRXML----QTIHRPKKRRAIDEFLEEMKERGPAPVSMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVK----------IQPQAHAPGLILPSVVPNPLVIAT 286

HSP 2 Score: 147.132 bits (370), Expect = 3.313e-32
Identity = 125/399 (31.33%), Postives = 182/399 (45.61%), Query Frame = 0

Query:  640 GRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAF---HNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAA----GENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAA------PLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSE---GEDVDGRPLD 1022
            GR+     H +SR        SRR GGRG       E  E +      LTG+Q  RARD+ RGR   +RLS +DY+TF  LL  L   R  +K+ MGFALD+++A+ ++V ++ ES  +       L G             Y+ SDILHNSSA V+NAS +RT+ Q  LP +       H S+A  GR++A  ++EK++ VL  W  WS++PP  + GL AT    +E E E         +   E  ++ L +  RQ+G+   G    L  +++ L EF    A               T  + R        + +    +A  +S  G G          P+      ED +++DG  MD+               +DD D E   GED+DG P+D
Sbjct:  517 GRQHDENRHESSRE-------SRRPGGRGGFSQGYGEKNEKL------LTGQQIARARDMERGRE-RNRLSNEDYDTFKELLDELTLERESVKKTMGFALDNSEAAVDLVNIILESFKSSTSSGVALVG-----------LXYVTSDILHNSSAAVKNASLFRTTFQECLPEIMDTLRIAHKSIA--GRMSANAMKEKVMNVLTAWESWSLFPPAVLVGLHATFLRKVE-EDEYIATHSLNFDGIGESDQERLRKTCRQSGIMATGDAKRLAVRLQWLKEFTSPTALIAPGSTVNPSFQSNTTSNVRETATPTAPDIDTNDETAETISEDGKGNGNVDDLDGEPIDGEPIVEDSDDIDGELMDDGVLD--GEPLDGDTAEDDLDGEPLDGEDLDGAPMD 885

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|568044905|gb|ETM42079.1| (hypothetical protein L914_12221 [Phytophthora parasitica])

HSP 1 Score: 186.422 bits (472), Expect = 1.570e-44
Identity = 125/300 (41.67%), Postives = 160/300 (53.33%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLP---PSALHAAS 308
            KKT+F KE+E+REA+KRQ D EAA+IY  FVASFD  D     GK FVR   G  + + G  ++ +        Q +    L  K  +A              ++ S +  S     L             L     + +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P A  PGL LP   P+ L  A+
Sbjct:   57 KKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTK--GKAFVR---GGTQAAQGHSQSAV--------QSRDVYRLKGKEQVA--------------SSSSGKKVSEMDKLLQEIKQKDAEQRQML----QTIHRPKKRRAIDEFLEEMKERGPAPVSMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVK----------IQPQAHAPGLILPSVVPNPLVIAT 315

HSP 2 Score: 150.599 bits (379), Expect = 3.176e-33
Identity = 126/399 (31.58%), Postives = 183/399 (45.86%), Query Frame = 0

Query:  640 GRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAF---HNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAA----GENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAA------PLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSE---GEDVDGRPLD 1022
            GR+     H +SR        SRR GGRG       E  E +      LTG+Q  RARD+ RGR   +RLS +DY+TF  LL  L   R  +K+ MGFALD+++A+ ++V ++ ES  +       L G            LY+ SDILHNSSA V+NAS +RT+ Q  LP +       H S+A  GR++A  ++EK++ VL  W  WS++PP  + GL AT    +E E E         +   E  ++ L +  RQ+G+   G    L  +++ L EF    A               T  + R        + +    +A  +S  G G          P+      ED +++DG  MD+               +DD D E   GED+DG P+D
Sbjct:  546 GRQHDENRHESSRE-------SRRPGGRGGFSQGYGEKNEKL------LTGQQIARARDMERGRE-RNRLSNEDYDTFKELLDELTLERESVKKTMGFALDNSEAAVDLVNIILESFKSSTSSGVALVG-----------LLYVTSDILHNSSAAVKNASLFRTTFQECLPEIMDTLRIAHKSIA--GRMSANAMKEKVMNVLTAWESWSLFPPAVLVGLHATFLRKVE-EDEYIATHSLNFDGIGESDQERLRKTCRQSGIMATGDAKRLAVRLQWLKEFTSPTALIAPGSTVNPSFQSNTTSNVRETATPTAPDIDTNDETAETISEDGKGNGNVDDLDGEPIDGEPIVEDSDDIDGELMDDGVLD--GEPLDGDTAEDDLDGEPLDGEDLDGAPMD 914

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|566019260|gb|ETI42171.1| (hypothetical protein F443_12662 [Phytophthora parasitica P1569])

HSP 1 Score: 186.422 bits (472), Expect = 1.584e-44
Identity = 125/300 (41.67%), Postives = 160/300 (53.33%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLP---PSALHAAS 308
            KKT+F KE+E+REA+KRQ D EAA+IY  FVASFD  D     GK FVR   G  + + G  ++ +        Q +    L  K  +A              ++ S +  S     L             L     + +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P A  PGL LP   P+ L  A+
Sbjct:   57 KKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTK--GKAFVR---GGTQAAQGHSQSAV--------QSRDVYRLKGKEQVA--------------SSSSGKKVSEMDKLLQEIKQKDAEQRQML----QTIHRPKKRRAIDEFLEEMKERGPAPVSMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVK----------IQPQAHAPGLILPSVVPNPLVIAT 315

HSP 2 Score: 150.599 bits (379), Expect = 3.288e-33
Identity = 126/399 (31.58%), Postives = 183/399 (45.86%), Query Frame = 0

Query:  640 GRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAF---HNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAA----GENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAA------PLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSE---GEDVDGRPLD 1022
            GR+     H +SR        SRR GGRG       E  E +      LTG+Q  RARD+ RGR   +RLS +DY+TF  LL  L   R  +K+ MGFALD+++A+ ++V ++ ES  +       L G            LY+ SDILHNSSA V+NAS +RT+ Q  LP +       H S+A  GR++A  ++EK++ VL  W  WS++PP  + GL AT    +E E E         +   E  ++ L +  RQ+G+   G    L  +++ L EF    A               T  + R        + +    +A  +S  G G          P+      ED +++DG  MD+               +DD D E   GED+DG P+D
Sbjct:  546 GRQHDENRHESSRE-------SRRPGGRGGFSQGYGEKNEKL------LTGQQIARARDMERGRE-RNRLSNEDYDTFKELLDELTLERESVKKTMGFALDNSEAAVDLVNIILESFKSSTSSGVALVG-----------LLYVTSDILHNSSAAVKNASLFRTTFQECLPEIMDTLRIAHKSIA--GRMSANAMKEKVMNVLTAWESWSLFPPAVLVGLHATFLRKVE-EDEYIATHSLNFDGIGESDQERLRKTCRQSGIMATGDAKRLAVRLQWLKEFTSPTALIAPGSTVNPSFQSNTTSNVRETATPTAPDIDTNDETAETISEDGKGNGNVDDLDGEPIDGEPIVEDSDDIDGELMDDGVLD--GEPLDGDTAEDDLDGEPLDGEDLDGAPMD 914

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|570322840|gb|ETO70788.1| (hypothetical protein F444_12769 [Phytophthora parasitica P1976])

HSP 1 Score: 186.422 bits (472), Expect = 1.685e-44
Identity = 125/300 (41.67%), Postives = 160/300 (53.33%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLP---PSALHAAS 308
            KKT+F KE+E+REA+KRQ D EAA+IY  FVASFD  D     GK FVR   G  + + G  ++ +        Q +    L  K  +A              ++ S +  S     L             L     + +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P A  PGL LP   P+ L  A+
Sbjct:   57 KKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTK--GKAFVR---GGTQAAQGHSQSAV--------QSRDVYRLKGKEQVA--------------SSSSGKKVSEMDKLLQEIKQKDAEQRQML----QTIHRPKKRRAIDEFLEEMKERGPAPVSMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVK----------IQPQAHAPGLILPSVVPNPLVIAT 315

HSP 2 Score: 150.599 bits (379), Expect = 3.463e-33
Identity = 126/399 (31.58%), Postives = 183/399 (45.86%), Query Frame = 0

Query:  640 GRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAF---HNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAA----GENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAA------PLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSE---GEDVDGRPLD 1022
            GR+     H +SR        SRR GGRG       E  E +      LTG+Q  RARD+ RGR   +RLS +DY+TF  LL  L   R  +K+ MGFALD+++A+ ++V ++ ES  +       L G            LY+ SDILHNSSA V+NAS +RT+ Q  LP +       H S+A  GR++A  ++EK++ VL  W  WS++PP  + GL AT    +E E E         +   E  ++ L +  RQ+G+   G    L  +++ L EF    A               T  + R        + +    +A  +S  G G          P+      ED +++DG  MD+               +DD D E   GED+DG P+D
Sbjct:  546 GRQHDENRHESSRE-------SRRPGGRGGFSQGYGEKNEKL------LTGQQIARARDMERGRE-RNRLSNEDYDTFKELLDELTLERESVKKTMGFALDNSEAAVDLVNIILESFKSSTSSGVALVG-----------LLYVTSDILHNSSAAVKNASLFRTTFQECLPEIMDTLRIAHKSIA--GRMSANAMKEKVMNVLTAWESWSLFPPAVLVGLHATFLRKVE-EDEYIATHSLNFDGIGESDQERLRKTCRQSGIMATGDAKRLAVRLQWLKEFTSPTALIAPGSTVNPSFQSNTTSNVRETATPTAPDIDTNDETAETISEDGKGNGNVDDLDGEPIDGEPIVEDSDDIDGELMDDGVLD--GEPLDGDTAEDDLDGEPLDGEDLDGAPMD 914

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|675200245|ref|XP_008909007.1| (hypothetical protein PPTG_14215 [Phytophthora parasitica INRA-310] >gi|568090656|gb|ETN05485.1| hypothetical protein PPTG_14215 [Phytophthora parasitica INRA-310])

HSP 1 Score: 186.422 bits (472), Expect = 1.685e-44
Identity = 125/300 (41.67%), Postives = 160/300 (53.33%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLP---PSALHAAS 308
            KKT+F KE+E+REA+KRQ D EAA+IY  FVASFD  D     GK FVR   G  + + G  ++ +        Q +    L  K  +A              ++ S +  S     L             L     + +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P A  PGL LP   P+ L  A+
Sbjct:   57 KKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTK--GKAFVR---GGTQAAQGHSQSAV--------QSRDVYRLKGKEQVA--------------SSSSGKKVSEMDKLLQEIKQKDAEQREML----QTIHRPKKRRAIDEFLEEMKERGPAPVSMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVK----------IQPQAHAPGLILPSVVPNPLVIAT 315

HSP 2 Score: 147.517 bits (371), Expect = 2.885e-32
Identity = 125/399 (31.33%), Postives = 182/399 (45.61%), Query Frame = 0

Query:  640 GRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAF---HNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAA----GENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPGASAA------PLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSE---GEDVDGRPLD 1022
            GR+     H +SR        SRR GGRG       E  E +      LTG+Q  RARD+ RGR   +RLS +DY+TF   L  L   R  +K+ MGFALD+++A+ ++V ++ ES  +       L G            LY+ SDILHNSSA V+NAS +RT+ Q  LP +       H S+A  GR++A  ++EK++ VL  W  WS++PP  + GL AT    +E E E         +   E  ++ L +  RQ+G+   G    L  +++ L EF    A               T  + R        + +    +A  +S  G G          P+      ED +++DG  MD+               +DD D E   GED+DG P+D
Sbjct:  546 GRQHDENRHESSRE-------SRRPGGRGGFSQGYGEKNEKL------LTGQQIARARDMERGRE-RNRLSNEDYDTFKESLDELTLERESVKKTMGFALDNSEAAVDLVNIILESFKSSTSSGVALVG-----------LLYVTSDILHNSSAAVKNASLFRTTFQECLPEIMDTLRIAHKSIA--GRMSANAMKEKVMNVLTAWESWSLFPPAVLVGLHATFLRKVE-EDEYIATHSLNFDGIGESDQERLRKTCRQSGIMATGDAKRLAVRLQWLKEFTSPTALIAPGSTVNPSFQSNTTSNVRETATPTAPDIDTNDETAETISEDGKGNGNVDDLDGEPIDGEPIVEDSDDIDGELMDDGVLD--GEPLDGDTAEDDLDGEPLDGEDLDGAPMD 914

[Close]

BLAST of EWM27024.1 vs. NCBI_GenBank
Match: gi|567956576|gb|ETK82196.1| (hypothetical protein L915_12384 [Phytophthora parasitica] >gi|567985258|gb|ETL35605.1| hypothetical protein L916_12294 [Phytophthora parasitica] >gi|570946654|gb|ETP11911.1| hypothetical protein F441_12624 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 186.422 bits (472), Expect = 1.685e-44
Identity = 125/300 (41.67%), Postives = 160/300 (53.33%), Query Frame = 0

Query:   12 KKTRFHKEKEEREARKRQEDAEAAKIYEQFVASFDAGDGNGNDGKRFVRARDGSRRGSSGKGRAGLADDGPSHYQPQMPVSLASKAPLAPLPTAAFPSHTSATAADSTRTTSASGSTLGNRSHGGGSSGPALVPGLASANSKKGPRQIDAFLEELKQSQESGVSKEETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLANLSPSTLVSPSALPPGLSLP---PSALHAAS 308
            KKT+F KE+E+REA+KRQ D EAA+IY  FVASFD  D     GK FVR   G  + + G  ++ +        Q +    L  K  +A              ++ S +  S     L             L     + +  K  R ID FLEE+K+   + VS E     +GS D+GDP TTNL+VGNL+P  TEE L+A FGR+G VYSVKIMWPRSEEERAR RN GFVSFY R DA+DA+  L +  L+   + +GW KAVK          + P A  PGL LP   P+ L  A+
Sbjct:   57 KKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDDTK--GKAFVR---GGTQAAQGHSQSAV--------QSRDVYRLKGKEQVA--------------SSSSGKKVSEMDKLLQEIKQKDAEQRQML----QTIHRPKKRRAIDEFLEEMKERGPAPVSMEGVGMTKGSFDNGDPETTNLYVGNLAPTVTEEVLQAEFGRYGEVYSVKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDNKQLEGQPMIVGWGKAVK----------IQPQAHAPGLILPSVVPNPLVIAT 315

HSP 2 Score: 150.214 bits (378), Expect = 3.776e-33
Identity = 126/399 (31.58%), Postives = 183/399 (45.86%), Query Frame = 0

Query:  640 GRRRRSRSHSASRSRSRSPGGSRRGGGRGRVGAPGDEGQEAVMPAAAFLTGRQAERARDIARGRAPSSRLSRKDYETFVALLRALDGGRAKIKEGMGFALDHADASEEVVGLLKESLCAEKGWSEDLAGEQPVSLSRRVARLYLVSDILHNSSAGVRNASTYRTSLQLALPYVFSAF---HNSLAVLGRLTAQHVEEKLLKVLKVWGEWSIYPPLFIAGLEATLTVDLEKEGEEKEGEEEGKEEDLEKGRDALVRQARQAGLTTEGPLVLLLRKMKRLDEFVKKKAA----GENRLEGGRWTGGDTRGGRGARGGEWEAGGSSASEMSRYGPG------ASAAPLRQVEEEEDEEEVDGTPMDEAATSIFSSKYGWARGDDDQDSE---GEDVDGRPLD 1022
            GR+     H +SR        SRR GGRG       E  E +      LTG+Q  RARD+ RGR   +RLS +DY+TF  LL  L   R  +K+ MGFALD+++A+ ++V ++ ES  +       L G            LY+ SDILHNSSA V+NAS +RT+ Q  LP +       H S+A  GR++A  ++EK++ VL  W  WS++PP  + GL AT    +E E E         +   E  ++ L +  RQ+G+   G    L  +++ L EF    A               T  + R        + +    +A  +S  G G          P+      ED +++DG  MD+               +DD D E   GED+DG P+D
Sbjct:  546 GRQHDENRHESSRE-------SRRPGGRGGFSQGYGEKNEKL------LTGQQIARARDMERGRE-RNRLSNEDYDTFKELLDELTLERESVKKTMGFALDNSEAAVDLVNIILESFKSSTSSGVALVG-----------LLYVTSDILHNSSAAVKNASLFRTTFQECLPEIMDTLRIAHKSIA--GRMSANAMKEKVMNVLTAWESWSLFPPAVLVGLHATFLRKVE-EDEYIATHSLNFDGIGESDQERLRKTCRQSGIMATGDAKRLAVRLQWLKEFTSPTALIAPGSTVNPSFQSNTTSNVRETATPTAPDIDTNDETAETISEDGKGNGDVDDLDGEPIDGEPIVEDSDDIDGELMDDGVLD--GEPLDGDTAEDDLDGEPLDGEDLDGAPMD 914

The following BLAST results are available for this feature:

BLAST of EWM27024.1 vs. NCBI_GenBank

BLAST of EWM27024.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585109196\|gb\|EWM27024.1\|	0.000e+0	100.00	U2 snrnp-associated splicing factor putative [Nann...	[more]
gi\|553186523\|ref\|XP_005854434.1\|	0.000e+0	99.74	U2-associated protein SR140, partial [Nannochlorop...	[more]
gi\|553183177\|ref\|XP_005853853.1\|	1.597e-174	100.00	U2-associated protein SR140, partial [Nannochlorop...	[more]
gi\|301110582\|ref\|XP_002904371.1\|	9.736e-46	41.84	U2-associated splicing factor, putative [Phytophth...	[more]
gi\|970652044\|gb\|KUF90776.1\|	1.437e-44	41.67	U2 snRNP-associated SURP motif-containing protein ...	[more]
gi\|568044905\|gb\|ETM42079.1\|	1.570e-44	41.67	hypothetical protein L914_12221 [Phytophthora para...	[more]
gi\|566019260\|gb\|ETI42171.1\|	1.584e-44	41.67	hypothetical protein F443_12662 [Phytophthora para...	[more]
gi\|570322840\|gb\|ETO70788.1\|	1.685e-44	41.67	hypothetical protein F444_12769 [Phytophthora para...	[more]
gi\|675200245\|ref\|XP_008909007.1\|	1.685e-44	41.67	hypothetical protein PPTG_14215 [Phytophthora para...	[more]
gi\|567956576\|gb\|ETK82196.1\|	1.685e-44	41.67	hypothetical protein L915_12384 [Phytophthora para...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3661	rna3661	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications