EWM27031.1, cds3611 (CDS) Nannochloropsis gaditana

Overview
NameEWM27031.1
Unique Namecds3611
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:826709..826778 -
Alignment locationCM002461.1:826419..826636 -
Alignment locationCM002461.1:826043..826273 -
Alignment locationCM002461.1:825828..825929 -
Alignment locationCM002461.1:825576..825666 -
Alignment locationCM002461.1:825287..825409 -
Alignment locationCM002461.1:824878..825010 -
Alignment locationCM002461.1:824751..824835 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27031.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g38.10444.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:826709..826778 -
CM002461.1supercontigCM002461.1:826419..826636 -
CM002461.1supercontigCM002461.1:826043..826273 -
CM002461.1supercontigCM002461.1:825828..825929 -
CM002461.1supercontigCM002461.1:825576..825666 -
CM002461.1supercontigCM002461.1:825287..825409 -
CM002461.1supercontigCM002461.1:824878..825010 -
CM002461.1supercontigCM002461.1:824751..824835 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
Homology
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|585109205|gb|EWM27031.1| (hypothetical protein Naga_100056g38 [Nannochloropsis gaditana])

HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MHQVILKLSRHICFGWRQGQRNWRNKYSIVLCRTQPFWMTMRRTAPSSGLPLGLLLLTCLVTCRGFAFQPLGGSHASTLHKTKAATSAPDDVSVAKRTAALMVPPLPSRSGREGKGEGGQTQLGASPTFYLARFAMALVPSSVTALGIGFGALAPALVAPVPAVHAQTDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLCPEIKGCWVMVATGHHKFNLKRTHQDWLKL 350
            MHQVILKLSRHICFGWRQGQRNWRNKYSIVLCRTQPFWMTMRRTAPSSGLPLGLLLLTCLVTCRGFAFQPLGGSHASTLHKTKAATSAPDDVSVAKRTAALMVPPLPSRSGREGKGEGGQTQLGASPTFYLARFAMALVPSSVTALGIGFGALAPALVAPVPAVHAQTDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLCPEIKGCWVMVATGHHKFNLKRTHQDWLKL
Sbjct:    1 MHQVILKLSRHICFGWRQGQRNWRNKYSIVLCRTQPFWMTMRRTAPSSGLPLGLLLLTCLVTCRGFAFQPLGGSHASTLHKTKAATSAPDDVSVAKRTAALMVPPLPSRSGREGKGEGGQTQLGASPTFYLARFAMALVPSSVTALGIGFGALAPALVAPVPAVHAQTDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLCPEIKGCWVMVATGHHKFNLKRTHQDWLKL 350          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|873227210|emb|CEM19210.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 189.119 bits (479), Expect = 1.460e-54
Identity = 97/183 (53.01%), Postives = 123/183 (67.21%), Query Frame = 0
Query:  140 PSSVTALGIGFGALAPALVAPVPAVHAQTDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLCP 322
            P+  TA     G L      P  AV +Q+    K+  G ASTL+ G    +TRGVN+E ++F G+DL+ VSFQQS+VR+ NF   K L ASFFDADL+NADFTGANM   NLELANL+GA F+DA+V EAY +G+T   +  IE +D+S TFLRKDQQ YLC  A G N +T ++T +SL CP
Sbjct:   91 PAQRTAASYANGGLFSLRGLPADAVPSQSGGKTKVVAGGASTLDQGRATIITRGVNLEGSDFSGQDLSGVSFQQSVVRNSNFAQTKLLGASFFDADLANADFTGANMKLVNLELANLRGASFRDAIVTEAYTTGSTSFGENDIENADFSETFLRKDQQKYLCGIAKGTNAVTGVATADSLNCP 273          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|298715141|emb|CBJ27829.1| (Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) [Ectocarpus siliculosus])

HSP 1 Score: 186.422 bits (472), Expect = 8.225e-54
Identity = 92/155 (59.35%), Postives = 119/155 (76.77%), Query Frame = 0
Query:  170 TDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLC--KRASGVNPITKISTKESLLCP 322
            +D K+  G+AST + G  KT+TRGVNIENA++  KDL++VSFQQSLVR  NF+ AK ++A FFDADLSN +F  ANM+QANLELANL GA  K+A+V EAYVSGAT++    IEG+D++ TFLRKDQ  YLC  + A G NP++ + T++SL CP
Sbjct:   91 SDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDADLSNCNFESANMNQANLELANLSGANMKNALVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGCP 245          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|544214888|ref|XP_005537590.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449018152|dbj|BAM81554.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 177.563 bits (449), Expect = 1.615e-49
Identity = 88/152 (57.89%), Postives = 111/152 (73.03%), Query Frame = 0
Query:  172 FKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLCPE 323
            FK+  G ASTL +GT K +TRGVN+E ANF  +DL  VSFQQS+VRD +F G+    ASFFDAD S A+F  AN+ +ANLELANL+ A  ++A++  AYV G T+L  IQIEGSDW+   LR DQ+  LCKRASG NP+T I+TK+SL C +
Sbjct:  170 FKVPGGGASTLATGTSKIVTRGVNLEGANFAKQDLHGVSFQQSIVRDVDFSGSNLQDASFFDADCSGANFQNANLSRANLELANLRKADLRNAILTNAYVVGQTKLEGIQIEGSDWTDVLLRPDQRRLLCKRASGENPVTHIATKDSLGCAD 321          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|551667882|ref|XP_005836701.1| (hypothetical protein GUITHDRAFT_135885 [Guillardia theta CCMP2712] >gi|428180855|gb|EKX49721.1| hypothetical protein GUITHDRAFT_135885 [Guillardia theta CCMP2712])

HSP 1 Score: 169.474 bits (428), Expect = 2.583e-47
Identity = 85/166 (51.20%), Postives = 114/166 (68.67%), Query Frame = 0
Query:  160 PVPAVHAQTDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLCPEIK 325
            P+PA  AQ    FK+ KG+AST +SG+ +T+TRG  +E +NF+G++L  +SFQQSL RD +F G     ASFFD DL+NA+  GA++   N EL  +K A  K+A+V  AY+   T+L  I IEG+D++ T LRKDQQ YLCKRASG NP T + TK+SL C  +K
Sbjct:   80 PIPA-FAQQGGSFKVLKGAASTQDSGSRRTITRGALLEGSNFDGQNLPGISFQQSLCRDCSFVGTNLKGASFFDGDLTNANMEGADVSNVNFELTCMKDANLKNAIVNNAYIQSTTKLDGINIEGADFTDTELRKDQQRYLCKRASGTNPKTGVDTKDSLRCSMLK 244          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|1210527302|dbj|GAX13937.1| (hypothetical protein FisN_5Lh159 [Fistulifera solaris])

HSP 1 Score: 162.54 bits (410), Expect = 4.183e-45
Identity = 80/155 (51.61%), Postives = 108/155 (69.68%), Query Frame = 0
Query:  171 DFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQ-IEGSDWSGTFLRKDQQTYLCKR--ASGVNPITKISTKESLLCP 322
            + KI+KG ASTL SG   ++TRGVN++ +NF G++L  V+FQQS+VRD NF+ +  + ASFFDA L  ++F  A+M   NLELA L  A  ++A+ RE YVSG+T    I+ IE SDW+ T+LR DQQ YLC    A G NP+T + T+ESL+CP
Sbjct:   49 EMKIQKGGASTLQSGRTISITRGVNLDGSNFAGQNLKGVAFQQSIVRDANFKKSNLVGASFFDATLDGSNFDDADMTMVNLELAQLNRASMRNAVAREMYVSGSTLFEGIKDIENSDWTDTYLRADQQKYLCNHPTAKGTNPVTGVDTRESLMCP 203          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|1210523824|dbj|GAX17506.1| (hypothetical protein FisN_5Hh159 [Fistulifera solaris])

HSP 1 Score: 160.999 bits (406), Expect = 1.595e-44
Identity = 80/155 (51.61%), Postives = 107/155 (69.03%), Query Frame = 0
Query:  171 DFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQ-IEGSDWSGTFLRKDQQTYLCKR--ASGVNPITKISTKESLLCP 322
            + KI+KG ASTL SG   ++TRGVN++ +NF G++L  V+FQQS+VRD NF  +  + ASFFDA L  ++F  A+M   NLELA L  A  ++A+ RE YVSG+T    I+ IE SDW+ T+LR DQQ YLC    A G NP+T + T+ESL+CP
Sbjct:   49 EMKIQKGGASTLQSGRTISITRGVNLDGSNFAGQNLKGVAFQQSIVRDANFAKSNLVGASFFDATLDGSNFDDADMTMVNLELAQLNRASMRNAVAREMYVSGSTLFEGIKDIENSDWTDTYLRADQQKYLCNHPTAKGTNPVTGVDTRESLMCP 203          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|224006618|ref|XP_002292269.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971911|gb|EED90244.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 154.451 bits (389), Expect = 2.352e-41
Identity = 80/171 (46.78%), Postives = 112/171 (65.50%), Query Frame = 0
Query:  160 PVPAVHAQTD------TDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQ-IEGSDWSGTFLRKDQQTYLCKR--ASGVNPITKISTKESLLC 321
            P P++ AQ        ++ K+  G ASTL SG   ++TRGVN++N+NF  ++L  V+FQQS+VRD +F  +    ASFFDA L  ++F  A+M   N+E+A    A  K+A+V++ YVSGAT    ++ IEGSDWS T LRKDQQ YLC    A G NP+T ++T+ESL+C
Sbjct:   83 PQPSIAAQNGDGASLASNAKLTTGGASTLQSGRTISITRGVNLDNSNFSNQNLKGVAFQQSIVRDSDFSNSNLYGASFFDATLDGSNFENADMTLCNVEMAQFNRANLKNAIVKDMYVSGATLFEGVKDIEGSDWSETQLRKDQQKYLCNHPTAKGTNPVTGVNTRESLMC 253          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|545704499|ref|XP_005704572.1| (thylakoid lumenal protein [Galdieria sulphuraria] >gi|452821017|gb|EME28052.1| thylakoid lumenal protein [Galdieria sulphuraria])

HSP 1 Score: 150.214 bits (378), Expect = 4.035e-40
Identity = 77/151 (50.99%), Postives = 109/151 (72.19%), Query Frame = 0
Query:  173 KIKKGSAST--LNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLCKRASGVNPITKISTKESLLC 321
            K+  G+AS+   ++G  +T+TRGVN+  A+F  +DL+ VSFQQSL+R+ +F GAK +SASFF A+LS A+   A++ +ANLELANL+ A  K+A++R AY SG TRL ++ I+G+D+S   LRKDQ+ YLC  A+G N  T + TK SL C
Sbjct:   64 KVGGGAASSGKTSTGVSRTVTRGVNLSGADFSEQDLSGVSFQQSLLRETDFHGAKLVSASFFGAELSYANLEDADLTEANLELANLRSAKLKNAVLRRAYFSGNTRLENVDIDGADFSEVILRKDQKKYLCNIANGTNSHTGVETKTSLGC 214          
BLAST of EWM27031.1 vs. NCBI_GenBank
Match: gi|1072231020|gb|OEU15753.1| (hypothetical protein FRACYDRAFT_187021 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 145.976 bits (367), Expect = 6.120e-39
Identity = 76/174 (43.68%), Postives = 110/174 (63.22%), Query Frame = 0
Query:  156 ALVAPVPAVH---AQTDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLTDIQ-IEGSDWSGTFLRKDQQTYLCKR--ASGVNPITKISTKESLLCPE 323
            +   P  AV    A T  + KI  G ASTL SG    +TRGVN++ ++F  ++L  V+FQQS+VRD NF+G     +SFFDA L  ++F  A+M  +N+E+A    A   + ++RE YVSG+T    I+ IEGSDWS T+LR DQ+  LC+   + G NP+T ++T+ESL+C +
Sbjct:   14 SFTEPAFAVEGGGATTAANAKITTGGASTLQSGRTIAITRGVNLDRSDFSNQNLKGVAFQQSIVRDSNFKGCNLYGSSFFDATLDGSNFEDADMSLSNVEMAQFNRANLHNTIMREVYVSGSTLFEGIKDIEGSDWSETYLRADQKKLLCEHPTSKGTNPVTGVNTRESLMCKD 187          
The following BLAST results are available for this feature:
BLAST of EWM27031.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109205|gb|EWM27031.1|0.000e+0100.00hypothetical protein Naga_100056g38 [Nannochlorops... [more]
gi|873227210|emb|CEM19210.1|1.460e-5453.01unnamed protein product [Vitrella brassicaformis C... [more]
gi|298715141|emb|CBJ27829.1|8.225e-5459.35Thylakoid lumenal 15 kDa protein, chloroplast prec... [more]
gi|544214888|ref|XP_005537590.1|1.615e-4957.89hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|551667882|ref|XP_005836701.1|2.583e-4751.20hypothetical protein GUITHDRAFT_135885 [Guillardia... [more]
gi|1210527302|dbj|GAX13937.1|4.183e-4551.61hypothetical protein FisN_5Lh159 [Fistulifera sola... [more]
gi|1210523824|dbj|GAX17506.1|1.595e-4451.61hypothetical protein FisN_5Hh159 [Fistulifera sola... [more]
gi|224006618|ref|XP_002292269.1|2.352e-4146.78predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|545704499|ref|XP_005704572.1|4.035e-4050.99thylakoid lumenal protein [Galdieria sulphuraria] ... [more]
gi|1072231020|gb|OEU15753.1|6.120e-3943.68hypothetical protein FRACYDRAFT_187021 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3620rna3620Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications