EWM27105.1, cds3551 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|585109282|gb|EWM27105.1| (c2h2-type zinc finger-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1736.85 bits (4497), Expect = 0.000e+0 Identity = 842/842 (100.00%), Postives = 842/842 (100.00%), Query Frame = 0
Query: 1 MPLEVRYRGHGPSLPRHDYQELQQQDHMQAGRVHGHPSIFANPSCTDEHSSSQGQNTLRDKPQHRTVSHQKSVQCIVRDVRSATSHAISRLNDGSDANLSPHSHTASSSDGIACGGNGVSGENRQASLPAVLVDKYDHHDPPQFTGQPSQFTSSQSHASDEDFRARSPCSSQPAYATSEMAVSSYEGKALGKESCLLASTLPSNAPSSKLPAIHCPSIASRDGTPPGPGLSQQQALYEPEEHRHDRSQRQQHPILEQKKRLTSQRPPDLSPHFTFACPSPCPTTSSSSLSSSASVHSPTTPLETSDQAAAPIAEPGGNWGGCYQGKGGHRTKKETEDDYLRANSRIMANGVFSCLHCDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDTGRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRARGSQGSRKRGREVVRTRDQGERAGAGEDAITATTRRGPASGGPEALVGDVVFDQTLSSDGSLSKWRGGDERADEHMSFQEMQQVLRKHNHNHQRGMVDPREGIHLGPLSANCQHASTSSLTNMAAQRMQAMRFGSTACGGEEEQVVGKHLSVARDSAANALVTGQTKNKCREGDGDGSGGGGMPTQPKLFTRVLHGQHVDFLSPDRVLECREGHKHPGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN 842
MPLEVRYRGHGPSLPRHDYQELQQQDHMQAGRVHGHPSIFANPSCTDEHSSSQGQNTLRDKPQHRTVSHQKSVQCIVRDVRSATSHAISRLNDGSDANLSPHSHTASSSDGIACGGNGVSGENRQASLPAVLVDKYDHHDPPQFTGQPSQFTSSQSHASDEDFRARSPCSSQPAYATSEMAVSSYEGKALGKESCLLASTLPSNAPSSKLPAIHCPSIASRDGTPPGPGLSQQQALYEPEEHRHDRSQRQQHPILEQKKRLTSQRPPDLSPHFTFACPSPCPTTSSSSLSSSASVHSPTTPLETSDQAAAPIAEPGGNWGGCYQGKGGHRTKKETEDDYLRANSRIMANGVFSCLHCDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDTGRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRARGSQGSRKRGREVVRTRDQGERAGAGEDAITATTRRGPASGGPEALVGDVVFDQTLSSDGSLSKWRGGDERADEHMSFQEMQQVLRKHNHNHQRGMVDPREGIHLGPLSANCQHASTSSLTNMAAQRMQAMRFGSTACGGEEEQVVGKHLSVARDSAANALVTGQTKNKCREGDGDGSGGGGMPTQPKLFTRVLHGQHVDFLSPDRVLECREGHKHPGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN
Sbjct: 1 MPLEVRYRGHGPSLPRHDYQELQQQDHMQAGRVHGHPSIFANPSCTDEHSSSQGQNTLRDKPQHRTVSHQKSVQCIVRDVRSATSHAISRLNDGSDANLSPHSHTASSSDGIACGGNGVSGENRQASLPAVLVDKYDHHDPPQFTGQPSQFTSSQSHASDEDFRARSPCSSQPAYATSEMAVSSYEGKALGKESCLLASTLPSNAPSSKLPAIHCPSIASRDGTPPGPGLSQQQALYEPEEHRHDRSQRQQHPILEQKKRLTSQRPPDLSPHFTFACPSPCPTTSSSSLSSSASVHSPTTPLETSDQAAAPIAEPGGNWGGCYQGKGGHRTKKETEDDYLRANSRIMANGVFSCLHCDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDTGRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRARGSQGSRKRGREVVRTRDQGERAGAGEDAITATTRRGPASGGPEALVGDVVFDQTLSSDGSLSKWRGGDERADEHMSFQEMQQVLRKHNHNHQRGMVDPREGIHLGPLSANCQHASTSSLTNMAAQRMQAMRFGSTACGGEEEQVVGKHLSVARDSAANALVTGQTKNKCREGDGDGSGGGGMPTQPKLFTRVLHGQHVDFLSPDRVLECREGHKHPGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN 842
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|1173952525|gb|OQS00191.1| (hypothetical protein THRCLA_06157 [Thraustotheca clavata]) HSP 1 Score: 152.91 bits (385), Expect = 7.268e-38 Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0
Query: 349 NGVFSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQ 463
+ ++ C C+++F KGNLKRH T H G+KP+ C +C K F+RKAD+E+H+RVHTGEKPY+C P+C +QFARISD+RSHERTHSG+K + C FP C R+FARK DL+KH VH+
Sbjct: 19 DKLYVCKECNQSFRFKGNLKRHQMTKHVGLKPYQCPLCPKMFARKADMEVHMRVHTGEKPYSC--PQCDKQFARISDMRSHERTHSGIKKYACQFPGCTRRFARKVDLRKHEFVHE 132
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|698824261|ref|XP_009845159.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574099764|gb|ETV65364.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 150.599 bits (379), Expect = 8.205e-38 Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVH 462
F C C +TF KGNLKRH T H G+KPF C C K+F+RKAD+++H+RVHTGEKPY CE ECG+QFARISDLRSHERTH G K F CPFP C +Q+ R+ DLKKH H
Sbjct: 21 FVCDICAQTFRFKGNLKRHQITAHVGLKPFQCEHCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKRFACPFPMCDKQYTRRVDLKKHEMTH 130 HSP 2 Score: 71.2478 bits (173), Expect = 3.196e-10 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 376 GVKPFACGVCNKTFSRKADLEIH-VRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQ 467
V F C +C +TF K +L+ H + H G KP+ CE C + FAR +D++ H R H+G K + C ECG+QFAR DL+ H H+ K+
Sbjct: 17 AVDKFVCDICAQTFRFKGNLKRHQITAHVGLKPFQCE--HCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKR 105
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|698824259|ref|XP_009845158.1| (hypothetical protein H257_17894 [Aphanomyces astaci] >gi|574099763|gb|ETV65363.1| hypothetical protein H257_17894 [Aphanomyces astaci]) HSP 1 Score: 150.599 bits (379), Expect = 4.545e-37 Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVH 462
F C C +TF KGNLKRH T H G+KPF C C K+F+RKAD+++H+RVHTGEKPY CE ECG+QFARISDLRSHERTH G K F CPFP C +Q+ R+ DLKKH H
Sbjct: 21 FVCDICAQTFRFKGNLKRHQITAHVGLKPFQCEHCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKRFACPFPMCDKQYTRRVDLKKHEMTH 130 HSP 2 Score: 72.0182 bits (175), Expect = 4.469e-10 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 376 GVKPFACGVCNKTFSRKADLEIH-VRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQ 467
V F C +C +TF K +L+ H + H G KP+ CE C + FAR +D++ H R H+G K + C ECG+QFAR DL+ H H+ K+
Sbjct: 17 AVDKFVCDICAQTFRFKGNLKRHQITAHVGLKPFQCE--HCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKR 105
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|1173935553|gb|OQR86652.1| (hypothetical protein ACHHYP_10325 [Achlya hypogyna]) HSP 1 Score: 150.984 bits (380), Expect = 5.808e-37 Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = 0
Query: 350 GVFSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQ 463
G + C C++ F KGNLKRH T H G+KPF C +C KTF+RKAD+++H+RVHTGEKPY C C +QFARISDLRSHERTHSG K F C FP C R+FARK DL+KH VH+
Sbjct: 22 GEYVCDVCNQLFRFKGNLKRHQMTKHVGLKPFQCALCPKTFARKADMQVHMRVHTGEKPYPCAL--CDKQFARISDLRSHERTHSGEKRFACAFPGCSRRFARKVDLRKHEFVHE 134
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|669141002|ref|XP_008606069.1| (hypothetical protein SDRG_02269 [Saprolegnia diclina VS20] >gi|530742128|gb|EQC40370.1| hypothetical protein SDRG_02269 [Saprolegnia diclina VS20]) HSP 1 Score: 150.214 bits (378), Expect = 7.261e-37 Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 0
Query: 352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQAS 469
+ C C +TF KGNLKRH T H G+KPF C +C KTF+RKAD+++H+RVHTGEKPY C C +QFARISDLRSHERTHSG K F C FP C R+FARK DL+KH VH+ +A+
Sbjct: 24 YVCDVCSQTFRFKGNLKRHQMTKHVGLKPFQCALCPKTFARKADMQVHMRVHTGEKPYPCAL--CDKQFARISDLRSHERTHSGEKRFACAFPGCSRRFARKVDLRKHEFVHETAAKAA 140
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|813165526|ref|XP_012203748.1| (hypothetical protein SPRG_20639 [Saprolegnia parasitica CBS 223.65] >gi|641531443|gb|KDO25515.1| hypothetical protein SPRG_20639 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 149.443 bits (376), Expect = 1.415e-36 Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 0
Query: 352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQAS 469
+ C C++ F KGNLKRH T H G+KPF C +C KTF+RKAD+++H+RVHTGEKPY C C +QFARISDLRSHERTHSG K F C FP C R+FARK DL+KH VH+ +A+
Sbjct: 24 YVCDVCNQAFRFKGNLKRHQMTKHVGLKPFQCALCPKTFARKADMQVHMRVHTGEKPYPCAL--CDKQFARISDLRSHERTHSGEKRFACAFPGCSRRFARKVDLRKHEFVHETAAKAA 140
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|673053759|ref|XP_008880840.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574463453|gb|ETV90524.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 147.132 bits (370), Expect = 1.518e-36 Identity = 71/112 (63.39%), Postives = 83/112 (74.11%), Query Frame = 0
Query: 352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVH 462
F C C +TF KGNLKRH T H G+KPF C C KTF+RKAD+++H+RVHTGEKPY C ECG+QFARISDLRSHERTH G K F CP+P C +Q+ R+ DLKKH H
Sbjct: 20 FVCDVCAQTFRFKGNLKRHQITAHVGLKPFQCERCPKTFARKADMQVHMRVHTGEKPYPCG--ECGKQFARISDLRSHERTHRGEKRFSCPYPTCDKQYTRRVDLKKHEMTH 129 HSP 2 Score: 71.2478 bits (173), Expect = 2.799e-10 Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 0
Query: 377 VKPFACGVCNKTFSRKADLEIH-VRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQAS 469
V F C VC +TF K +L+ H + H G KP+ CE C + FAR +D++ H R H+G K + C ECG+QFAR DL+ H H+ K+ S
Sbjct: 17 VNKFVCDVCAQTFRFKGNLKRHQITAHVGLKPFQCE--RCPKTFARKADMQVHMRVHTGEKPYPCG--ECGKQFARISDLRSHERTHRGEKRFS 106
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|301106442|ref|XP_002902304.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262098924|gb|EEY56976.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 154.066 bits (388), Expect = 2.822e-36 Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 0
Query: 351 VFSCLH--CDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASG 470
+F C C + F LKGNLKRH+ H+G K FAC C K F RKAD+E+H RVHTGEKPY C++ ECG+ FAR SDL SHERTH+G K F C FP C R FARK+DL KH +H+ ASG
Sbjct: 59 IFRCTFPGCGREFQLKGNLKRHVNIHNGDKKFACKFCGKKFLRKADMEVHYRVHTGEKPYRCKYEECGKCFARRSDLLSHERTHTGRKPFSCAFPGCDRSFARKFDLHKHQRLHEDQTDASG 180
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|567966980|gb|ETK92169.1| (hypothetical protein L915_04412 [Phytophthora parasitica]) HSP 1 Score: 155.606 bits (392), Expect = 3.760e-36 Identity = 84/196 (42.86%), Postives = 108/196 (55.10%), Query Frame = 0
Query: 351 VFSCLH--CDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDT-GRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRAR 543
+F C C + F LKGNLKRH+ H+G K FAC C K F RKAD+E+H RVHTGEKPY C++ ECG+ FAR SDL SHERTH+G K F C FP C R FARK+DL KH +H+ ASG T R + SV + ++G V N ++++ + + APL + M R
Sbjct: 63 IFRCTFPGCGREFQLKGNLKRHVNIHNGDKKFACKFCGKKFLRKADMEVHYRVHTGEKPYRCKYEECGKCFARRSDLLSHERTHTGRKPFACAFPGCDRSFARKFDLHKHQRLHEDQTDASGKSKTKKRKLSPAITASVNKK--IDSGDENCDCPSDVTNPLVTTTSTAMNPDVLLPEPPVMKAPLPITTTCMTNR 256 The following BLAST results are available for this feature:
BLAST of EWM27105.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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