EWM27215.1, cds3530 (CDS) Nannochloropsis gaditana

Overview
NameEWM27215.1
Unique Namecds3530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:635585..635756 +
Alignment locationCM002461.1:635899..635964 +
Alignment locationCM002461.1:636077..638256 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27215.1
Productdna polymerase eta
Orig transcript idgnl|cribi|Naga_100010g99.6185.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:635585..635756 +
CM002461.1supercontigCM002461.1:635899..635964 +
CM002461.1supercontigCM002461.1:636077..638256 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO:0003684damaged DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017963DNA_repair_prot_UmuC-like_N
IPR001126DNA_repair_prot_UmuC-like
IPR017961DNA_pol_Y-fam_little_finger
Homology
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|585109395|gb|EWM27215.1| (dna polymerase eta [Nannochloropsis gaditana])

HSP 1 Score: 1657.5 bits (4291), Expect = 0.000e+0
Identity = 805/805 (100.00%), Postives = 805/805 (100.00%), Query Frame = 0
Query:    1 MNQENDDGEAEEEHDDIRDEADRSFLTHVHGTLLSSSLAGGADCTSTSPASKVIVHIDMDAFYCQVEAGLDPSLKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTRAAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQKSRMTSFFPKFGANSTHSAVDSGSNSKATAPPEYSFSDSKSSSPCAGAGDLSTDPPPAPCESFFKASRSTPIAKQGSPVEEIAETRKRQLDGETAAKRESTNMGGLDPTVIDPAVLEELPPHIRREITDGIAAATASGKRNKFSSRSAPNEKKIDTYFPKGGPHTGWPTPARPPPSSLSVKRGTLDRFLKTTK 805
            MNQENDDGEAEEEHDDIRDEADRSFLTHVHGTLLSSSLAGGADCTSTSPASKVIVHIDMDAFYCQVEAGLDPSLKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTRAAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQKSRMTSFFPKFGANSTHSAVDSGSNSKATAPPEYSFSDSKSSSPCAGAGDLSTDPPPAPCESFFKASRSTPIAKQGSPVEEIAETRKRQLDGETAAKRESTNMGGLDPTVIDPAVLEELPPHIRREITDGIAAATASGKRNKFSSRSAPNEKKIDTYFPKGGPHTGWPTPARPPPSSLSVKRGTLDRFLKTTK
Sbjct:    1 MNQENDDGEAEEEHDDIRDEADRSFLTHVHGTLLSSSLAGGADCTSTSPASKVIVHIDMDAFYCQVEAGLDPSLKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTRAAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQKSRMTSFFPKFGANSTHSAVDSGSNSKATAPPEYSFSDSKSSSPCAGAGDLSTDPPPAPCESFFKASRSTPIAKQGSPVEEIAETRKRQLDGETAAKRESTNMGGLDPTVIDPAVLEELPPHIRREITDGIAAATASGKRNKFSSRSAPNEKKIDTYFPKGGPHTGWPTPARPPPSSLSVKRGTLDRFLKTTK 805          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|308809351|ref|XP_003081985.1| (Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS) [Ostreococcus tauri] >gi|116060452|emb|CAL55788.1| DNA-repair protein, UmuC-like, N-terminal [Ostreococcus tauri])

HSP 1 Score: 275.018 bits (702), Expect = 9.788e-79
Identity = 200/594 (33.67%), Postives = 286/594 (48.15%), Query Frame = 0
Query:   52 KVIVHIDMDAFYCQVEA---GLDPSLKGKPIAVVQYAP--SGDLST--QTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPD-ITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTR------AAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMG-VGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQKSRMTSFFPKFGANSTHS 630
            +V+ H+D+DAFYCQVE    G+D ++   P+ V QY P   G + T  Q      R      SLIAVSYEARARGVKR M    AR +C D   +VQV     KADLT YR AGA V +IL+R G  ERASIDEAY+DLTA A+  L +     ++   R++ VAG                    IGG+                         G V  A+L    A       +AC A  S + D           +              R      A+ AWW+R   AW  +EK +  GA I   +R A   ELGYT S G+A +K+LAKL S M+KP  QT++  +    LLA LP+ R++GLG  FG++++E L   TIGE+   P+ +LE + GE  A W+ K+  G DDD V++R + KS+  GKTF G   +R +E   +WL +LA EL  R   D +   R P+LLT+   S   +  +  + SR  P+RL  +++                        Q++LA     L+ +W       S  +    ++ + ++ASNF+ ++++S   +   K   ++T S
Sbjct:    6 RVVAHLDLDAFYCQVERAAHGIDVNV---PLVVAQYDPFERGGVRTRDQGARRILRDGLERHSLIAVSYEARARGVKRNMRAIDARRLCGDGAVVVQVPTRRSKADLTAYRRAGAAVARILSRGGVMERASIDEAYLDLTANARRTLAETEWREVLATARKAHVAG-----------------AAPIGGK-------------------------GFVSKASLRAGSADGPQAAVEACAASTSGVTDEKTEKELEKETEAEPVDEEEERMRNYRPRPPDEASLAWWDREESAWGETEKLLAAGAYICHNLRKACVDELGYTLSAGIATNKMLAKLTSGMNKPASQTVLCPDHTEALLAELPIDRIRGLGAKFGRELVEGLDVKTIGELARTPIRKLEEICGEERAQWVRKVSLGQDDDPVKEREMPKSIGTGKTFRGALAIRSLESAKKWLAELAAELNDRCEDDRDEWNREPKLLTLGLSSPDELNTNSGHCSRRCPMRLGADEI-----------------------TQDALA-----LISKW-------SSGRSDWSITGMSVSASNFVTLERESGDVAEMLKNAKSTTGS 519          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|1199291480|gb|OUS46573.1| (Translesion DNA polymerase-REV1 deoxycytidyl transferase [Ostreococcus tauri])

HSP 1 Score: 271.166 bits (692), Expect = 2.768e-77
Identity = 201/594 (33.84%), Postives = 286/594 (48.15%), Query Frame = 0
Query:   52 KVIVHIDMDAFYCQVEA---GLDPSLKGKPIAVVQYAP--SGDLST--QTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPD-ITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTR------AAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMG-VGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQKSRMTSFFPKFGANSTHS 630
            +V+ H+D+DAFYCQVE    G+D ++   P+ V QY P   G + T  Q      R      SLIAVSYEARARGVKR M    AR +C D   +VQV     KADLT YR AGA V +IL+R G  ERASIDEAY+DLTA                ARR   +A  E ++  AT  +  V     IGG+                         G V  A+L    A       +AC A  S + +           +              R      A+ AWW+R   AW  +EK +  GA I   +R A   ELGYT S G+A +K+LAKL S M+KP  QT++  +    LLA LP+ R++GLG  FG++++E L   TIGE+   P+ +LE + GE  A W+ K+  G DDD V++R + KS+  GKTF G   +R +E   +WL +LA EL  R   D +   R P+LLT+   S   +  +  + SR  P+RL  +++                        Q++LA     L+ +W       S  +    ++ + ++ASNF+ ++++S   +   K   ++T S
Sbjct:    6 RVVAHLDLDAFYCQVERAAHGIDANV---PLVVAQYDPFERGGVRTRDQGARRILRDGLERHSLIAVSYEARARGVKRNMRAIDARRLCGDGAVVVQVPTRRSKADLTAYRRAGAAVARILSRGGVMERASIDEAYLDLTA---------------NARR--TLAETEWREVLATARKAHVAGAAPIGGK-------------------------GFVSKASLRAGSADGPQAAVEACAASTSGVTEEKTEKETEKETEAEPVDEEEERMRNYRPRPPDEASLAWWDREESAWGETEKLLAAGAYICHNLRKACVDELGYTLSAGIATNKMLAKLTSGMNKPASQTVLCPDHTEALLAELPIDRIRGLGAKFGRELVEGLDVKTIGELARTPIRKLEEICGEERAQWVRKVSLGQDDDPVKEREMPKSIGTGKTFRGALAIRSLESAKKWLAELAAELNDRCEDDRDEWNREPKLLTLGLSSPDELNTNSGHCSRRCPMRLGADEI-----------------------TQDALA-----LISKW-------SSGRSDWSITGMSVSASNFVTLERESGDVAEMLKNAKSTTGS 519          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|545356141|ref|XP_005643819.1| (DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169] >gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 222.631 bits (566), Expect = 7.749e-61
Identity = 125/320 (39.06%), Postives = 187/320 (58.44%), Query Frame = 0
Query:  321 AWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVS-FQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQ-KSRMTSFFPKFGANSTHSAVDSGSNS 638
            AWW RP+ AW   ++ + CGAA+++E+RAAV  ELGY+CS G+A +K+LAKL S MHKP+QQTL+  + +P L+A LP+ +L+ LGG FG+++M  L  +T+GE+   PL RLEA+  ++DA WL +L RG+DD+ V++R+L +S+SCGKTF G+  L+    +H+WL +L  EL +R+  D   + R+P+LLTV  +   G G    + SRS  LR                   P +Q          +A+ GL L++RW       +  +    +++LY+TASNF       S +T F     A    S   SGS +
Sbjct:  136 AWWHRPVGAWGPGQRLLACGAAVVAELRAAVRRELGYSCSAGIAHNKILAKLASGMHKPSQQTLVTLDCVPGLMAGLPIPKLRQLGGKFGEEIMTALNITTVGELSAVPLRRLEAVCSQADALWLHRLSRGIDDEEVKERQLPQSISCGKTFRGHTALKAFPAVHKWLGELGDELEERITADRADNERVPRLLTVGMWGEGGPGTSGGSVSRSCQLR------------------RPESQ---------PMAEDGLKLIKRW-------ASDRPGWAITSLYMTASNFQAAPTGSSTITRFLKPKSAPGQQSPPPSGSTA 421          

HSP 2 Score: 133.265 bits (334), Expect = 1.624e-29
Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = 0
Query:   79 IAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRL 190
            +A +QY P+GDLST     +R  + SN SLIAV YEARA+GVKR M GD AR VCPD+ LVQV VAH KADLT+YR +G +V+ ILAR    ERASIDE Y+D+T  A+ RL
Sbjct:    1 LAELQYNPNGDLSTLRPDEERIFNSSNGSLIAVGYEARAKGVKRGMRGDDARKVCPDLNLVQVPVAHGKADLTLYRASGKQVLNILARLSVAERASIDECYLDITEEAKRRL 112          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|1060224317|ref|XP_017840386.1| (PREDICTED: DNA polymerase eta [Drosophila busckii])

HSP 1 Score: 230.335 bits (586), Expect = 1.834e-60
Identity = 158/528 (29.92%), Postives = 250/528 (47.35%), Query Frame = 0
Query:   52 KVIVHIDMDAFYCQVEAGLDPSLKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYG-PTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTRAAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPS-AQMGGRNDVQESLADQGLSL 577
            +VI+ +DMD F+CQVE  + P  +GKP+AVVQY P                     +IAV+Y ARA+GV R M GD+A+ +C DI L +V    +KAD + YR+AG +V  +L R+    ERAS+DEAY+D+T     R+                      Q  + TL  +++ N   +G +   +   K   R ++P V                  R   ++   D    + S L  LI  S+A       G+ RA+  A T                                        GY CS G+A +K+LAKL + M+KPN+QT++    IP L   LPV ++KGLGG FG+ V E LG   +G+V++   + L+    + +  WL  + RG+D ++V  R  +KS+ C K F G NN+  ++ +  WL +L+ E+  RL +D   + R  + + V +    + G   ++SRSAP+    ++ L+  A E ++  T +  + GG + +  ++   GLS+
Sbjct:   39 RVILLVDMDCFFCQVEEKMQPEYQGKPLAVVQYNP----------------WRGGGIIAVNYAARAKGVTRHMRGDEAKELCHDIILCKVPNIREKADTSKYRDAGKEVANVLQRFTQKLERASVDEAYLDVTETVNKRMEQL-------------------QTGEYTLKPQELVNTFSVGYECIGEYVNKITNRFANPYVDDA---------------RFMLSYDHNDLPAVRQSDLRLLIGASIA-------GEVRAAVKAET----------------------------------------GYECSAGIAHNKILAKLAAGMNKPNKQTILPLAEIPGLFDTLPVGKIKGLGGKFGETVCETLGVKFLGQVLKFSEAELQRKLDDKNGNWLHLIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLEHWLSELSSEINDRLEKDFMENNRKAKQMVVQY-VQEIDGEEVSSSRSAPITQCDQETLAKQALELIKTNTKTFLRAGGDSALNNAIRFLGLSV 468          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|924559935|gb|ALC44947.1| (DNApol-eta [Drosophila busckii])

HSP 1 Score: 201.445 bits (511), Expect = 1.056e-50
Identity = 147/505 (29.11%), Postives = 234/505 (46.34%), Query Frame = 0
Query:   75 KGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYG-PTERASIDEAYVDLTAMAQSRLRDFGPDMIVRARRESKVAGLEGQKEQATLTREDVRNGVLIGGQVRQDGSTKEERRGSSPSVSRTGDEGGRVENAALTIPRAGTAWIGRDACMAQPSALDDLIQYSVALSCADEPGQARASTSASTTRAAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPS-AQMGGRNDVQESLADQGLSL 577
            +GKP+AVVQY P                     +IAV+Y ARA+GV R M GD+A+ +C DI L +V    +KAD + YR+AG +V  +L R+    ERAS+DEAY+D+T     R+                      Q  + TL  +++ N   +G +   +   K   R ++P V                  R   ++   D    + S L  LI  S+A       G+ RA+  A T                                        GY CS G+A +K+LAKL + M+KPN+QT++    IP L   LPV ++KGLGG FG+ V E LG   +G+V++   + L+    + +  WL  + RG+D ++V  R  +KS+ C K F G NN+  ++ +  WL +L+ E+  RL +D   + R  + + V +    + G   ++SRSAP+    ++ L+  A E ++  T +  + GG + +  ++   GLS+
Sbjct:    6 QGKPLAVVQYNP----------------WRGGGIIAVNYAARAKGVTRHMRGDEAKELCHDIILCKVPNIREKADTSKYRDAGKEVANVLQRFTQKLERASVDEAYLDVTETVNKRMEQL-------------------QTGEYTLKPQELVNTFSVGYECIGEYVNKITNRFANPYVDDA---------------RFMLSYDHNDLPAVRQSDLRLLIGASIA-------GEVRAAVKAET----------------------------------------GYECSAGIAHNKILAKLAAGMNKPNKQTILPLAEIPGLFDTLPVGKIKGLGGKFGETVCETLGVKFLGQVLKFSEAELQRKLDDKNGNWLHLIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLEHWLSELSSEINDRLEKDFMENNRKAKQMVVQY-VQEIDGEEVSSSRSAPITQCDQETLAKQALELIKTNTKTFLRAGGDSALNNAIRFLGLSV 412          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|552812782|ref|XP_005843786.1| (hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis] >gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis])

HSP 1 Score: 196.438 bits (498), Expect = 1.831e-49
Identity = 134/319 (42.01%), Postives = 182/319 (57.05%), Query Frame = 0
Query:  319 AAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSF----------QSMGVG------GHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQ-KSRMTSFF 620
            AAAWW+RP   W   E+ + C AA  +E+RAAV AELGY+CS G+A SKL+AKL S +HKP QQT++    +  LL  LP+ +LKGLGG  G++VM +LG  T+G++   PLSRLEA +GE +A WL  L RG  DD VE+RRLAKSV CGKTF G   LR++  +H+WL +L GEL +RL+ D + ++R  +LLTVSF          Q  G        G+H   +RS PL                           R    E++A+  L+L++RW  E            LST+ + ASNF+ ++   S +T FF
Sbjct:  184 AAAWWQRPPHHWLPGERLLACAAAAAAELRAAVRAELGYSCSAGVAHSKLMAKLCSGLHKPAQQTVLPASAVAALLGQLPIPKLKGLGGKLGERVMSELGVETVGQLAAVPLSRLEAAFGEKEAQWLAALARGATDDKVEERRLAKSVGCGKTFRGRQALRDLAAVHKWLLELGGELAERLQEDLQENSREAKLLTVSFAPQLPWVATQQPGGTALFHAAPGYHAT-TRSCPL---------------------------RKATAEAIAEDALALIKRWAAEQG------QGWSLSTMDVAASNFVAVQSAASAITRFF 468          

HSP 2 Score: 147.132 bits (370), Expect = 5.305e-33
Identity = 83/159 (52.20%), Postives = 96/159 (60.38%), Query Frame = 0
Query:   49 PASKVIVHIDMDAFYCQVEAGLDPSLKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLI-------------AVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARYGPTERASIDEAYVDLTAMAQSRLRDFG 194
            P  K I H+D+DAFY QVE    P L+G+P+ VVQY P G L T+    +R ++ SN SLI              + YEARA GVKR M GDQARA CP I LV    AH KADLT+YR  G KV  IL+R   TERASIDE Y+DLT  AQ RL   G
Sbjct:    5 PLHKAICHVDLDAFYAQVEVKQHPELRGQPVGVVQYNPYGLLETRGPAENRVMNSSNGSLIAVRRAAPRRAAPPVLLYEARAAGVKRNMRGDQARAACPTIQLVP--TAHGKADLTLYRGEGKKVQDILSRLATTERASIDECYLDLTDEAQRRLAACG 161          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|302833114|ref|XP_002948121.1| (hypothetical protein VOLCADRAFT_116690 [Volvox carteri f. nagariensis] >gi|300266923|gb|EFJ51109.1| hypothetical protein VOLCADRAFT_116690, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 190.274 bits (482), Expect = 3.020e-46
Identity = 92/200 (46.00%), Postives = 136/200 (68.00%), Query Frame = 0
Query:  321 AWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDD-DSVEDRRLAKSVSCGKTFFGNNNLREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQS 519
            A+W RPL  W   E+ +V GA + +++R+A+  ELGY+CS G+A  KL+AKLGS +HKPNQQT+++   +P LL  LP+A+L+ LG  FG++V E LG  T+GE+   P SRLE+LYG   AA L +L  G+D+ D V  R   K++SCGKTF G++ L+++ Q+   L QLA E+++R+  D   H R+P  LT++ Q+
Sbjct:  145 AYWHRPLSRWDPHERLLVAGAVVAAQLRSALLRELGYSCSAGVAHYKLMAKLGSGLHKPNQQTVVLARAVPTLLRNLPLAKLRSLGPKFGEQVQEGLGIQTLGELWSVPASRLESLYGPEAAAGLMRLAAGMDEGDMVSPRLAPKTLSCGKTFRGSSALQDIRQVSPRLMQLAAEMSERIEADRRDHGRLPTQLTLTLQT 344          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|551669928|ref|XP_005837722.1| (hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta CCMP2712] >gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta CCMP2712])

HSP 1 Score: 173.711 bits (439), Expect = 1.600e-44
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 0
Query:   52 KVIVHIDMDAFYCQVEAGLDPSLKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAGAKVIKILARY-GPTERASIDEAYVDLTAMAQSRL----RDFGPDM---IVRARRESKVAGLEGQ 213
            +V+ H+DMD FY QVE   D SL+GKP+AV+QY P+GDL       +RR   S+ SLIAVSYEARA+GVKRIM G +AR  CPD+ L+QV VAHKK+D+ +YREAGA+V+ +LAR+    ERASIDE Y D+T  A  +L    R+FG D+   ++    ++ VAG E Q
Sbjct:    3 RVVAHVDMDCFYVQVEQRRDESLRGKPVAVIQYNPNGDLQDVRPDENRRCDHSDGSLIAVSYEARAKGVKRIMRGKEARQACPDLILIQVPVAHKKSDINLYREAGAEVVNVLARFSSACERASIDEVYCDITDAALLQLDEIERNFGADVGPTLLDEMDKTWVAGYEQQ 172          

HSP 2 Score: 130.568 bits (327), Expect = 1.660e-29
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = 0
Query:  309 ASTSASTTRAAAAWWERPLQAWTRSEKEMVCGAAILSEMRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGD-FGKKVMEDLGCSTIGEVVERPLSRLEALYGES----DAAWLFKLVRGVDDDSVEDRRLAKSVSCGKT 471
            A     T      WW RPL  W  SE+ +  GA ++++MR AV  E  +TCS G++ +K+LAKLGS +HKPNQQT++  E    L+  LP++RL+GLGG+  GK + E+    T+GE+ + P   L + +G+S       W++++ +G+    V+D+ LAKS   GK+
Sbjct:  167 AGYEQQTGNGQEEWWRRPLSRWKTSERLLAAGAQVVTKMRRAVLEETSFTCSAGISHNKILAKLGSGLHKPNQQTILPTEAAQKLMQDLPISRLRGLGGEKLGKAIQEEFHVETVGELQKIPCPLLVSKFGDSPKPPGGLWVYRIAKGICLQPVKDQELAKSRGSGKS 334          
BLAST of EWM27215.1 vs. NCBI_GenBank
Match: gi|760437805|ref|XP_011395971.1| (DNA polymerase eta [Auxenochlorella protothecoides] >gi|675350661|gb|KFM23101.1| DNA polymerase eta [Auxenochlorella protothecoides])

HSP 1 Score: 176.407 bits (446), Expect = 1.294e-43
Identity = 153/424 (36.08%), Postives = 209/424 (49.29%), Query Frame = 0
Query:  347 MRAAVTAELGYTCSGGLAPSKLLAKLGSAMHKPNQQTLIVQEMIPILLAPLPVARLKGLGGDFGKKVMEDLGCSTIGEVVERPLSRLEALYGESDAAWLFKLVRGVDDDSVEDRRLAKSVSCGKTFFGNNN-LREMEQIHRWLRQLAGELTQRLRRDAELHARIPQLLTVSFQSMGVGGHHQNASRSAPLRLSIEQLLSVDAEETVEKGTPSAQMGGRNDVQESLADQGLSLVRRWHKETAHLSKSQHTLCLSTLYLTASNFLEIKQKS-RMTSFFPKFGANSTHSAVDSGSNSKATAPPEYSFSDSKSSSPCAGAGD----LSTDPPPAPCESFFKASRSTPIAK-QGSPVEEIAETRKRQLDGETAAKRESTNMG-GLDPTVI----DPAVLEELPPHIRREITDGIAAA-----TASGKRN 753
            +RA V  + GYTCS GLA +KLLAKL S +HKP+  TL+    +P LLA LP+ARL+ LGG +G  + + LG +T G++   P SRLEA+ GE DAAWL  L RGVD + V +RRL KS SCGKTF G  + L ++  +  WL  L  EL +RL  D E + R+P LLTVS+            SR AP  L+ +    V +  +V +         R     ++AD   +LVRRW       S       +  + L AS F+  + +S  +T FF   GA +  SA D+ S   A A  E            AGAG+    + ++      ES   AS S  +A+ + SP  E         DG  A+   +T    G+ P  +      A L ELPP +R E    +  A      A+GKR 
Sbjct:  131 LRADVRTQTGYTCSAGLAHTKLLAKLASGLHKPDACTLVAAAGVPELLADLPLARLRMLGGKYGAGLTDALGVTTAGQLAALPRSRLEAVAGEKDAAWLGGLCRGVDGEEVVERRLPKSQSCGKTFRGRRSALADLNAVRHWLGVLGKELEERLAADREENGRMPTLLTVSW------------SRDAPPALAPDGWARVPSVPSVSR-----SCALRRPEAAAMADDAAALVRRWA------SVQPPGWNIGAMSLEASKFVMAQGESAAITRFFKAGGAQAGPSAADAVSPDGAGAKLEGD----------AGAGEGVHVVQSE------ESMCPASGSQQVAEGRRSPTHEPG-------DGAEASASPATRPAPGVRPGALLSSEQEAFLAELPPELRSEARAQLGVAVMRSRVAAGKRQ 508          

HSP 2 Score: 138.658 bits (348), Expect = 7.642e-31
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0
Query:   49 PASKVIVHIDMDAFYCQVEAGLDPS-LKGKPIAVVQYAPSGDLSTQTIHHDRRVSQSNQSLIAVSYEARARGVKRIMLGDQARAVCPDITLVQVCVAHKKADLTIYREAG 157
            P +KVI H+D+DAFY QVEA  DP+ L GKP+AVVQY P GDL T     DR +  S  S+IAVSYEARA+GV+R M GD+A A+CPD+ LVQV  AH KADLT+YR AG
Sbjct:    4 PRNKVICHVDLDAFYAQVEAKRDPNRLAGKPLAVVQYNPQGDLRTLLPEDDRVIPASPNSIIAVSYEARAQGVRRNMRGDEACALCPDLILVQVPTAHGKADLTLYRAAG 113          
The following BLAST results are available for this feature:
BLAST of EWM27215.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109395|gb|EWM27215.1|0.000e+0100.00dna polymerase eta [Nannochloropsis gaditana][more]
gi|308809351|ref|XP_003081985.1|9.788e-7933.67Translesion DNA polymerase-REV1 deoxycytidyl trans... [more]
gi|1199291480|gb|OUS46573.1|2.768e-7733.84Translesion DNA polymerase-REV1 deoxycytidyl trans... [more]
gi|545356141|ref|XP_005643819.1|7.749e-6139.06DNA/RNA polymerase, partial [Coccomyxa subellipsoi... [more]
gi|1060224317|ref|XP_017840386.1|1.834e-6029.92PREDICTED: DNA polymerase eta [Drosophila busckii][more]
gi|924559935|gb|ALC44947.1|1.056e-5029.11DNApol-eta [Drosophila busckii][more]
gi|552812782|ref|XP_005843786.1|1.831e-4942.01hypothetical protein CHLNCDRAFT_139920 [Chlorella ... [more]
gi|302833114|ref|XP_002948121.1|3.020e-4646.00hypothetical protein VOLCADRAFT_116690 [Volvox car... [more]
gi|551669928|ref|XP_005837722.1|1.600e-4452.94hypothetical protein GUITHDRAFT_39857, partial [Gu... [more]
gi|760437805|ref|XP_011395971.1|1.294e-4336.08DNA polymerase eta [Auxenochlorella protothecoides... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3539rna3539Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications