EWM27143.1, cds3446 (CDS) Nannochloropsis gaditana

Overview
NameEWM27143.1
Unique Namecds3446
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:454767..454769 -
Alignment locationCM002461.1:453960..454072 -
Alignment locationCM002461.1:453620..453743 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27143.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g8.6113.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:454767..454769 -
CM002461.1supercontigCM002461.1:453960..454072 -
CM002461.1supercontigCM002461.1:453620..453743 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27143.1 vs. NCBI_GenBank
Match: gi|585109323|gb|EWM27143.1| (hypothetical protein Naga_100010g8 [Nannochloropsis gaditana])

HSP 1 Score: 160.614 bits (405), Expect = 5.412e-50
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 
Query:    1 MQAYEGTHKITAFSIMLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV 79
            MQAYEGTHKITAFSIMLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV
Sbjct:    1 MQAYEGTHKITAFSIMLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV 79
[Close]
BLAST of EWM27143.1 vs. NCBI_GenBank
Match: gi|553190799|ref|XP_005855263.1| (hypothetical protein NGA_0074500 [Nannochloropsis gaditana CCMP526] >gi|422293788|gb|EKU21088.1| hypothetical protein NGA_0074500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.568 bits (327), Expect = 3.342e-38
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:   16 MLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV 79
            MLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV
Sbjct:    1 MLGVVRGIAARVKPAKNQAQLISRRMMGGDGGHHPHYVFEPPFNKTFVAVLVGGGVTLGTGLVV 64
The following BLAST results are available for this feature:
BLAST of EWM27143.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109323|gb|EWM27143.1|5.412e-50100.00hypothetical protein Naga_100010g8 [Nannochloropsi... [more]
gi|553190799|ref|XP_005855263.1|3.342e-38100.00hypothetical protein NGA_0074500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3455rna3455Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications