EWM27234.1, cds3436 (CDS) Nannochloropsis gaditana

Overview
NameEWM27234.1
Unique Namecds3436
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:437034..437048 -
Alignment locationCM002461.1:436250..436770 -
Alignment locationCM002461.1:434552..436046 -
Alignment locationCM002461.1:434335..434504 -
Alignment locationCM002461.1:434153..434232 -
Alignment locationCM002461.1:433933..434102 -
Alignment locationCM002461.1:433711..433878 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27234.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100038g44.7689.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:437034..437048 -
CM002461.1supercontigCM002461.1:436250..436770 -
CM002461.1supercontigCM002461.1:434552..436046 -
CM002461.1supercontigCM002461.1:434335..434504 -
CM002461.1supercontigCM002461.1:434153..434232 -
CM002461.1supercontigCM002461.1:433933..434102 -
CM002461.1supercontigCM002461.1:433711..433878 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|585109415|gb|EWM27234.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 1794.25 bits (4646), Expect = 0.000e+0
Identity = 872/872 (100.00%), Postives = 872/872 (100.00%), Query Frame = 0
Query:    1 MPLAKVVIESVCSLSRPVSPKVSSAATAAVHAPKPTTYPLLSTGSACTPAQTMAYPMPPGYPHMPIGMPPSYAPLPPPPPGPPGHYQHHMPPIPRQDPGVTSVGMTSVCAGGGHSIGTKNGSSDGYGQSYQMIRTGSDESGLTTTTMGSSSTSSSSSTTSSQQQRKRMRLTSEERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEEAQSRAASESGLMDDSSSLGDADEADEGKAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPVAGNQPGRSHPPQPSHHLPPHPQLAQSFAQFPSNGQALYPAAPVPQGGASGEGSSVASSSTTFSSASSQATGSISMTTGKTPEGNSHHSGNGRAPRPEGARVGQEGGSQGSEQEGLGDEDEDDDEVEEEEEEDERAYKAPKQVSPRWSEVPPSQVGEHWATSRPHLAAPSHQSGLRSVPPYPLSFPPTSAGTTQNGAPTDVGTEYKVEGSSMMRAIAPMGVLSAPTADDESRCRSPLRQQPPMPSIPIQAGAESCDVLEAGSGRKGETKPEPPSMQATKGLESDKERVTLCHPLQHICSQIQHIHSGGQGSGQREVGRQSVFQYHQHNLLAFRGENWIKRRCEISCARRKVGIWNNPKERNVKIGEKRGKFDRIGGLRKSPVDLQGWIGQSEIVCDRVILLWADECAYVSEGKTFDRRKPTAGIRCQARKRNGRETEFQKYRTRSSFLRAFCFIASSLPGQGTGTLRRRATH 872
            MPLAKVVIESVCSLSRPVSPKVSSAATAAVHAPKPTTYPLLSTGSACTPAQTMAYPMPPGYPHMPIGMPPSYAPLPPPPPGPPGHYQHHMPPIPRQDPGVTSVGMTSVCAGGGHSIGTKNGSSDGYGQSYQMIRTGSDESGLTTTTMGSSSTSSSSSTTSSQQQRKRMRLTSEERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEEAQSRAASESGLMDDSSSLGDADEADEGKAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPVAGNQPGRSHPPQPSHHLPPHPQLAQSFAQFPSNGQALYPAAPVPQGGASGEGSSVASSSTTFSSASSQATGSISMTTGKTPEGNSHHSGNGRAPRPEGARVGQEGGSQGSEQEGLGDEDEDDDEVEEEEEEDERAYKAPKQVSPRWSEVPPSQVGEHWATSRPHLAAPSHQSGLRSVPPYPLSFPPTSAGTTQNGAPTDVGTEYKVEGSSMMRAIAPMGVLSAPTADDESRCRSPLRQQPPMPSIPIQAGAESCDVLEAGSGRKGETKPEPPSMQATKGLESDKERVTLCHPLQHICSQIQHIHSGGQGSGQREVGRQSVFQYHQHNLLAFRGENWIKRRCEISCARRKVGIWNNPKERNVKIGEKRGKFDRIGGLRKSPVDLQGWIGQSEIVCDRVILLWADECAYVSEGKTFDRRKPTAGIRCQARKRNGRETEFQKYRTRSSFLRAFCFIASSLPGQGTGTLRRRATH
Sbjct:    1 MPLAKVVIESVCSLSRPVSPKVSSAATAAVHAPKPTTYPLLSTGSACTPAQTMAYPMPPGYPHMPIGMPPSYAPLPPPPPGPPGHYQHHMPPIPRQDPGVTSVGMTSVCAGGGHSIGTKNGSSDGYGQSYQMIRTGSDESGLTTTTMGSSSTSSSSSTTSSQQQRKRMRLTSEERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEEAQSRAASESGLMDDSSSLGDADEADEGKAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPVAGNQPGRSHPPQPSHHLPPHPQLAQSFAQFPSNGQALYPAAPVPQGGASGEGSSVASSSTTFSSASSQATGSISMTTGKTPEGNSHHSGNGRAPRPEGARVGQEGGSQGSEQEGLGDEDEDDDEVEEEEEEDERAYKAPKQVSPRWSEVPPSQVGEHWATSRPHLAAPSHQSGLRSVPPYPLSFPPTSAGTTQNGAPTDVGTEYKVEGSSMMRAIAPMGVLSAPTADDESRCRSPLRQQPPMPSIPIQAGAESCDVLEAGSGRKGETKPEPPSMQATKGLESDKERVTLCHPLQHICSQIQHIHSGGQGSGQREVGRQSVFQYHQHNLLAFRGENWIKRRCEISCARRKVGIWNNPKERNVKIGEKRGKFDRIGGLRKSPVDLQGWIGQSEIVCDRVILLWADECAYVSEGKTFDRRKPTAGIRCQARKRNGRETEFQKYRTRSSFLRAFCFIASSLPGQGTGTLRRRATH 872          
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|224007783|ref|XP_002292851.1| (hypothetical protein THAPSDRAFT_24189 [Thalassiosira pseudonana CCMP1335] >gi|220971713|gb|EED90047.1| hypothetical protein THAPSDRAFT_24189 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 117.087 bits (292), Expect = 6.140e-24
Identity = 86/255 (33.73%), Postives = 125/255 (49.02%), Query Frame = 0
Query:  169 RLTSEERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYE--------EAQSRAASESGLMDDSSSLGD---ADEADEGKAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPVAGNQPGRSHPP 412
            + +S ERLQRSRERNR+HARKTR+RKK  M+ +Q   + L+ E  R++ A+ E  TANIL+ +   E                                    GA++G L     V+S ++R+   +   +K  E        +  S+  +E   +D   SL +    D  D    G  R  C  +P + ++IRRERNR+HAKRTRDR++ FMEE E ++ +L  EN  L+  +  I  D  PVA +    SH P
Sbjct:  123 KTSSTERLQRSRERNRMHARKTRQRKKEHMQKLQNRADELKLEQVRLKQAINEKNTANILVGLFQSEE-----------------------------------GADNGALMMDPVVESLMKRSTEEIPDASKIPELPALILPGQHSSKKKAEGSDVDGGESLPEDMQEDGIDYALLGKDRAAC--SPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEDENALLQDHIIKINADQPPVASSSASTSHLP 340          
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|219117437|ref|XP_002179513.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409404|gb|EEC49336.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.457 bits (267), Expect = 9.226e-21
Identity = 85/254 (33.46%), Postives = 133/254 (52.36%), Query Frame = 0
Query:  142 LTTTTMGSSSTSSSSSTTSSQQQRKRMRLTSEERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSA---PAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEE-AQSRAASESGLMDDSSSLGDADEADEGKAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQML 391
            +TTT   +  T++S+ + SS  +    +  +++R+QRSRERNR+HARKTR+RKK QM+S++    +L+ E  R++  + E  TANIL+            L S+  + +PN  P+ +     S    P  S +     L+         ++     VAA+ ++  +      AS S +  D   + D D  D    G  R +C   PE+ ++IRRERNR+HAKRTRDR++ F EE  ++   L +EN  LR  L
Sbjct:   86 MTTTADPNIVTAASTESVSSSPKWLPKKADTDDRVQRSRERNRIHARKTRQRKKEQMQSLEGRATDLKHEQIRLKQIINEKNTANILV-----------GLFSKGQSQSPNEDPRVEALMYRSVEEIPDPSKIPELPALILPGQHASKKIKVAVPVVAASPQSMSDGGGEEVASTSDVSGDEQQVPD-DGIDYDLLGKDRSKC--TPEELDQIRRERNRMHAKRTRDRKRIFTEEMAEMCRILEEENHLLRVHL 325          
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|1210517567|dbj|GAX23482.1| (hypothetical protein FisN_14Hh348 [Fistulifera solaris])

HSP 1 Score: 98.2117 bits (243), Expect = 1.615e-18
Identity = 80/229 (34.93%), Postives = 112/229 (48.91%), Query Frame = 0
Query:  179 SRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANIL--LVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEEAQSRAASESGLMDDSSSLGDADEADEG----KAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPV 401
            SRERNR+HARKTR+RKK QM+S+Q   E+L+ E  R+R  + E  TA+IL  L  + P   +  A   E  N           +P    P  S +     L+         L   +A+   N KA +E+                   ADE ++G      G  R +C  +PE+ +RIRRERNR+HAKRTRDR++ F E+  ++  +L  EN+ L   L  I  DH  V
Sbjct:   11 SRERNRIHARKTRQRKKEQMQSLQSRAEDLKREQLRLRQIINEKNTASILVGLFAKSPINVQSSAEDPEVEN--------LLKRPVDEIPDASKVSELPALI---------LPGQHAS--KNAKALQEST------------------ADETEDGIDYELLGKDRSKC--SPEELDRIRRERNRMHAKRTRDRKRLFTEQMSEICRQLEDENDALLDYLTKIDPDHNFV 200          
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|298708217|emb|CBJ30556.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-12
Identity = 74/218 (33.94%), Postives = 111/218 (50.92%), Query Frame = 0
Query:  174 ERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMR-GPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEEAQSRAASESGLMDDSSSLGDADEA---DEGKAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEEL 387
            +R  R+RERNR+HARKTR+RKK  ++ +Q+ I  L++E +R+    T+  TA +LL +   P+  +E    S+ P+    S P  K     + PA S      G        + + E           ++E+A  +   E   MD S   GD +EA     GK GG     K    DR  +RRERNR+HAKRTR+R+K F+E    ++ ++  EN +L
Sbjct:   82 DRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGSQHPS--SRSSPALKLPKAAATPAASRSSKGSG--------RDWGEEV--------ASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKGGGGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQL 281          
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|1210514210|dbj|GAX26992.1| (hypothetical protein FisN_9Lh300 [Fistulifera solaris])

HSP 1 Score: 72.4034 bits (176), Expect = 6.665e-10
Identity = 76/280 (27.14%), Postives = 119/280 (42.50%), Query Frame = 0
Query:  173 EERLQRSRERNRVHARKTRKRKKVQMESIQVTIENLQEEGRRMRLAVTEWYTANILLVMRGPEAEKEEALKSEAPNHAPNSGPQCKGQPPGSAPAGSTMGANDGLLSKYMTVQSFLERTNAAVAANNKAYEEAQSRAASESGLMDDSSSLGDADEAD--EGKAGGARGRCK-YAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPVAGNQPGRSHPPQPSHHLPPHPQLAQSFAQFPSNGQALYPAAPVPQGGA 449
            E+RL +SRERNR HAR+TR RKK  +E++Q  +  L+ E + ++  + E   A+ILL M   E E                       P             +     ++TV +  +R    V +N+  +     + + +  L    + LG     +   G     +G  K    E  +++RRERNR+HAK TRDR+K F+   EK +  L  + + +R+ L  +      V+G  P  S    PS      P L+    Q P +  + Y   P P   A
Sbjct:   76 EQRLAKSRERNREHARRTRIRKKEHLEALQSKVRELEAERKNLKQKMEECNIASILLGMSSNEEE-----------------------PHNDVDVDMFRSKKERKNETHVTVLTEGKRKRFFVESNDYQFSSKSMKVSIDGEL----TILGGGCHVNWKTGVYSDNKGFHKTLTNEQLQKLRRERNRMHAKLTRDRKKCFISVLEKTVEDLEMDIQTIRETLARV-----SVSGMAPT-SQIVTPSRSPIVSPTLSH---QEPEDDVSAYSMDPQPTSAA 319          
BLAST of EWM27234.1 vs. NCBI_GenBank
Match: gi|1210527655|dbj|GAX13641.1| (hypothetical protein FisN_14Lh348 [Fistulifera solaris])

HSP 1 Score: 65.0846 bits (157), Expect = 1.455e-7
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0
Query:  325 ADEADEG----KAGGARGRCKYAPEDRERIRRERNRIHAKRTRDRRKRFMEESEKVMTRLLKENEELRQMLDLIYGDHAPVAG 403
            ADE ++G      G  R +C  +PE+ +RIRRERNR+HAKRTRDR++ F E+  ++  +L  EN+ L   L  I  DH  V+ 
Sbjct:   93 ADETEDGIDYELLGKDRSQC--SPEELDRIRRERNRMHAKRTRDRKRLFTEQMSEICRQLEDENDALLDYLTKIDPDHNFVSS 173          
The following BLAST results are available for this feature:
BLAST of EWM27234.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109415|gb|EWM27234.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|224007783|ref|XP_002292851.1|6.140e-2433.73hypothetical protein THAPSDRAFT_24189 [Thalassiosi... [more]
gi|219117437|ref|XP_002179513.1|9.226e-2133.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210517567|dbj|GAX23482.1|1.615e-1834.93hypothetical protein FisN_14Hh348 [Fistulifera sol... [more]
gi|298708217|emb|CBJ30556.1|1.070e-1233.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210514210|dbj|GAX26992.1|6.665e-1027.14hypothetical protein FisN_9Lh300 [Fistulifera sola... [more]
gi|1210527655|dbj|GAX13641.1|1.455e-743.37hypothetical protein FisN_14Lh348 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3445rna3445Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications