EWM27298.1, cds3375 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|585109482|gb|EWM27298.1| (polymerase (dna directed) delta regulatory subunit [Nannochloropsis gaditana]) HSP 1 Score: 432.95 bits (1112), Expect = 1.273e-153 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGGRSLNT 212
MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGGRSLNT
Sbjct: 1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGGRSLNT 212
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|553188328|ref|XP_005854777.1| (polymerase delta regulatory subunit [Nannochloropsis gaditana CCMP526] >gi|422294284|gb|EKU21584.1| polymerase delta regulatory subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 313.538 bits (802), Expect = 5.578e-107 Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0
Query: 1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQG 152
MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQ
Sbjct: 1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQA 152
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|298711679|emb|CBJ32730.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 115.546 bits (288), Expect = 1.774e-26 Identity = 64/166 (38.55%), Postives = 98/166 (59.04%), Query Frame = 0
Query: 37 DGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202
DG E RV L+Y P YQRF K ++FTQQ+SH+Y RL ++ + AA +WG + +++++ +G +VIGT +K M LRPS+L+E+R++ + A+ P ++TS +D+LVLEDESGRV++SG + V+GLV+A KG
Sbjct: 27 DGARGDELGAPRVELAYEPRYQRFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGK-----EGEGGGVKFVDRLVNMREGDEW-VVIGTTYKAMKLRPSILNEFREDRGISMAVV---APVGSFTSEDDSLVLEDESGRVSISGPGIQSSSLVSGLVIAVKG 183
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|291238172|ref|XP_002738996.1| (PREDICTED: DNA polymerase delta subunit 2-like isoform X1 [Saccoglossus kowalevskii] >gi|585694429|ref|XP_006821823.1| PREDICTED: DNA polymerase delta subunit 2-like isoform X2 [Saccoglossus kowalevskii] >gi|585694433|ref|XP_006821824.1| PREDICTED: DNA polymerase delta subunit 2-like isoform X3 [Saccoglossus kowalevskii]) HSP 1 Score: 109.768 bits (273), Expect = 1.401e-24 Identity = 69/160 (43.12%), Postives = 90/160 (56.25%), Query Frame = 0
Query: 43 EEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202
+ + QR + SY RFR K R+F++QY+H+Y RL MRPML AA KWG DA L +K+ DL G + VIGT+FK M L+PS+L E +E L P P + YT D L+LEDE R+TL G+ L V VTG++VA G
Sbjct: 16 QAEFQRQSCSYKNLSDRFRVKNRSFSRQYAHLYAERLLSMRPMLTRAAKKKWG----------DAIRL-KKLCDLKLGEKCC-VIGTLFKHMNLKPSILKEISEEI----NLMPQPV-KSKYTDESDVLILEDELQRITLVGK-LDVHTAVTGIIVAVYG 157
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|470528918|ref|XP_004367984.1| (DNA polymerase epsilon subunit B protein [Acanthamoeba castellanii str. Neff] >gi|440804352|gb|ELR25229.1| DNA polymerase epsilon subunit B protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 109.768 bits (273), Expect = 2.045e-24 Identity = 67/197 (34.01%), Postives = 107/197 (54.31%), Query Frame = 0
Query: 15 VITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEG--------EDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGP-DTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202
++ A++D + G E+ G + K++R T Y + RFR + ++QQY+ +Y +RL+ MRP L AA +W +GK G P + KI++L +V GT++K+MPLRP++L+ Y E ++ P P +NY S +D L++EDESGR++L G LP VTG++VA +G
Sbjct: 25 LLCPPAIIDPMAVEGGEEKGKK-------HKIRRETGDYDAAHHRFRTLTKEYSQQYAPLYYHRLQKMRPRLLQAAKERW-----EGKLGVSSSSSSTAKLPRIVNKILEL-RADEEVIVAGTLYKEMPLRPNILESYAKERSI------IPPPLRSNYVSEKDRLIIEDESGRISLVGVDLPTDLVVTGIIVAIRG 202
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|1005450288|ref|XP_015762343.1| (PREDICTED: DNA polymerase delta subunit 2-like [Acropora digitifera]) HSP 1 Score: 109.768 bits (273), Expect = 2.349e-24 Identity = 65/171 (38.01%), Postives = 89/171 (52.05%), Query Frame = 0
Query: 33 PGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGR 203
P +G E EE+++R T Y+ +RF K R F +QY+ +Y R+ MR L AAA KWG K+ + V G +VIGT+FK M L+P++L E +E L P P P Y D LV+EDES RV ++G +PVG+ VTG +VA G
Sbjct: 23 PSAHEGEELFEERIERATCLYSNESERFVLKERNFARQYAQIYAVRIMAMRKKLAAAARRKWGVNFELKKQLAE-----------VKGNERCVVIGTLFKKMELKPNILKEISEE----HNLMPQP-PRVKYADDGDELVIEDESERVVITGN-IPVGNVVTGSIVALCGH 176
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|1176123134|ref|XP_020632913.1| (DNA polymerase delta subunit 2-like [Orbicella faveolata]) HSP 1 Score: 108.997 bits (271), Expect = 5.252e-24 Identity = 68/174 (39.08%), Postives = 96/174 (55.17%), Query Frame = 0
Query: 32 DPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAV 205
+P +G E EE+++R T SY+ +RF + R F++QY+ +Y+ R+ MR L AAA KWG G ++ +K+ D V VIGT+FK M L+PS+L E +E L P P YT D LV+EDE+ RVTL+G +PVG VTG +VA G +
Sbjct: 90 EPSTHEGLE-DEERIERATCSYSNESERFLLQERNFSRQYAQIYSVRIMAMRKKLAAAARRKWG--------GRESKFELKKLSD-VKIDEKCFVIGTLFKKMELKPSILKEISEE----HNLMPQPS-RVKYTEDSDELVIEDETERVTLTGN-IPVGTSVTGSIVALCGHTI 247
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|156375394|ref|XP_001630066.1| (predicted protein [Nematostella vectensis] >gi|156217079|gb|EDO38003.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 107.071 bits (266), Expect = 2.264e-23 Identity = 67/171 (39.18%), Postives = 87/171 (50.88%), Query Frame = 0
Query: 33 PGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGR 203
P +Q+ E K+ R T SY +RFR K R+F +QYS Y RL MR L AAA KWG P K E + +IGT+FK M L+P +L E E L LQP+ NY S +D +VLEDES RV L+G + VG ++G ++A GR
Sbjct: 23 PNSQECGIEDENKVDRATCSYENLSERFRLKERSFGRQYSQFYAVRLMAMRKKLAAAARRKWGNSLPIKKLTE------------LKLDEKCCIIGTLFKKMELKPCVLKEMSAEQNL--LLQPSRA---NYVSDDDFMVLEDESERVVLTGN-IEVGSSISGTIMALSGR 175
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|593798592|ref|XP_007162334.1| (hypothetical protein PHAVU_001G143200g [Phaseolus vulgaris] >gi|561035798|gb|ESW34328.1| hypothetical protein PHAVU_001G143200g [Phaseolus vulgaris]) HSP 1 Score: 104.76 bits (260), Expect = 8.582e-23 Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 0
Query: 46 LQRVTLSYTPTYQRFRAKARTFT-QQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGG 207
++RV SY + F+ + F QQYSH+Y RL LMR +L + W P +C +++L +G + +++GT++K M L+P +LDEY + ++ ++P N+ S+D LVLEDESGRV LSG +P ++VTG+VVA G+ G
Sbjct: 5 MERVQCSYGSLDETFKIRKEMFHGQQYSHIYFARLHLMRTLL-YSLVPHWKPNFP----------VC-TVLELEEG-KECVIVGTLYKHMKLKPCILDEYSKQKSVVPLVKPH-----NFMDSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGA 149
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|593798568|ref|XP_007162322.1| (hypothetical protein PHAVU_001G142200g [Phaseolus vulgaris] >gi|561035786|gb|ESW34316.1| hypothetical protein PHAVU_001G142200g [Phaseolus vulgaris]) HSP 1 Score: 104.375 bits (259), Expect = 9.393e-23 Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 0
Query: 45 KLQRVTLSYTPTYQRFRAKARTFT-QQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGG 207
+++RV SY + F+ + F QQYSH+Y RL LMR +L + W P +C +++L +G + +++GT++K M L+P +LDEY + + ++P N+ S+D LVLEDESGRV LSG +P ++VTG+VVA G+ G
Sbjct: 2 RMERVQCSYGCLDETFKIRKEMFHGQQYSHIYFARLHLMRTLL-YSLVPHWKPNFP----------VC-TVLELEEG-KECVIVGTLYKHMKLKPCILDEYSKQKSAVPLVKPH-----NFMHSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGA 147 The following BLAST results are available for this feature:
BLAST of EWM27298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|