EWM27298.1, cds3375 (CDS) Nannochloropsis gaditana

Overview
NameEWM27298.1
Unique Namecds3375
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:273937..274390 -
Alignment locationCM002461.1:273482..273650 -
Alignment locationCM002461.1:273357..273372 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27298.1
Productpolymerase (dna directed) delta regulatory subunit
Orig transcript idgnl|cribi|Naga_101011g1.5795.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:273937..274390 -
CM002461.1supercontigCM002461.1:273482..273650 -
CM002461.1supercontigCM002461.1:273357..273372 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR024826DNA_pol_delta/II_ssu
Homology
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|585109482|gb|EWM27298.1| (polymerase (dna directed) delta regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 432.95 bits (1112), Expect = 1.273e-153
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGGRSLNT 212
            MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGGRSLNT
Sbjct:    1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGGRSLNT 212          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|553188328|ref|XP_005854777.1| (polymerase delta regulatory subunit [Nannochloropsis gaditana CCMP526] >gi|422294284|gb|EKU21584.1| polymerase delta regulatory subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 313.538 bits (802), Expect = 5.578e-107
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0
Query:    1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQG 152
            MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQ 
Sbjct:    1 MAGGGDFVDMSTSSVITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQA 152          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|298711679|emb|CBJ32730.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.546 bits (288), Expect = 1.774e-26
Identity = 64/166 (38.55%), Postives = 98/166 (59.04%), Query Frame = 0
Query:   37 DGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202
            DG    E    RV L+Y P YQRF  K ++FTQQ+SH+Y  RL  ++  +  AA  +WG      +          +++++ +G    +VIGT +K M LRPS+L+E+R++  +  A+     P  ++TS +D+LVLEDESGRV++SG  +     V+GLV+A KG
Sbjct:   27 DGARGDELGAPRVELAYEPRYQRFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGK-----EGEGGGVKFVDRLVNMREGDEW-VVIGTTYKAMKLRPSILNEFREDRGISMAVV---APVGSFTSEDDSLVLEDESGRVSISGPGIQSSSLVSGLVIAVKG 183          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|291238172|ref|XP_002738996.1| (PREDICTED: DNA polymerase delta subunit 2-like isoform X1 [Saccoglossus kowalevskii] >gi|585694429|ref|XP_006821823.1| PREDICTED: DNA polymerase delta subunit 2-like isoform X2 [Saccoglossus kowalevskii] >gi|585694433|ref|XP_006821824.1| PREDICTED: DNA polymerase delta subunit 2-like isoform X3 [Saccoglossus kowalevskii])

HSP 1 Score: 109.768 bits (273), Expect = 1.401e-24
Identity = 69/160 (43.12%), Postives = 90/160 (56.25%), Query Frame = 0
Query:   43 EEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202
            + + QR + SY     RFR K R+F++QY+H+Y  RL  MRPML  AA  KWG          DA  L +K+ DL  G +   VIGT+FK M L+PS+L E  +E      L P P   + YT   D L+LEDE  R+TL G+ L V   VTG++VA  G
Sbjct:   16 QAEFQRQSCSYKNLSDRFRVKNRSFSRQYAHLYAERLLSMRPMLTRAAKKKWG----------DAIRL-KKLCDLKLGEKCC-VIGTLFKHMNLKPSILKEISEEI----NLMPQPV-KSKYTDESDVLILEDELQRITLVGK-LDVHTAVTGIIVAVYG 157          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|470528918|ref|XP_004367984.1| (DNA polymerase epsilon subunit B protein [Acanthamoeba castellanii str. Neff] >gi|440804352|gb|ELR25229.1| DNA polymerase epsilon subunit B protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 109.768 bits (273), Expect = 2.045e-24
Identity = 67/197 (34.01%), Postives = 107/197 (54.31%), Query Frame = 0
Query:   15 VITSDAMLDSILQNGEEDPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEG--------EDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGP-DTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202
            ++   A++D +   G E+ G +        K++R T  Y   + RFR   + ++QQY+ +Y +RL+ MRP L  AA  +W     +GK G           P +  KI++L       +V GT++K+MPLRP++L+ Y  E ++       P P  +NY S +D L++EDESGR++L G  LP    VTG++VA +G
Sbjct:   25 LLCPPAIIDPMAVEGGEEKGKK-------HKIRRETGDYDAAHHRFRTLTKEYSQQYAPLYYHRLQKMRPRLLQAAKERW-----EGKLGVSSSSSSTAKLPRIVNKILEL-RADEEVIVAGTLYKEMPLRPNILESYAKERSI------IPPPLRSNYVSEKDRLIIEDESGRISLVGVDLPTDLVVTGIIVAIRG 202          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|1005450288|ref|XP_015762343.1| (PREDICTED: DNA polymerase delta subunit 2-like [Acropora digitifera])

HSP 1 Score: 109.768 bits (273), Expect = 2.349e-24
Identity = 65/171 (38.01%), Postives = 89/171 (52.05%), Query Frame = 0
Query:   33 PGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGR 203
            P   +G E  EE+++R T  Y+   +RF  K R F +QY+ +Y  R+  MR  L AAA  KWG      K+  +           V G    +VIGT+FK M L+P++L E  +E      L P P P   Y    D LV+EDES RV ++G  +PVG+ VTG +VA  G 
Sbjct:   23 PSAHEGEELFEERIERATCLYSNESERFVLKERNFARQYAQIYAVRIMAMRKKLAAAARRKWGVNFELKKQLAE-----------VKGNERCVVIGTLFKKMELKPNILKEISEE----HNLMPQP-PRVKYADDGDELVIEDESERVVITGN-IPVGNVVTGSIVALCGH 176          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|1176123134|ref|XP_020632913.1| (DNA polymerase delta subunit 2-like [Orbicella faveolata])

HSP 1 Score: 108.997 bits (271), Expect = 5.252e-24
Identity = 68/174 (39.08%), Postives = 96/174 (55.17%), Query Frame = 0
Query:   32 DPGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAV 205
            +P   +G E  EE+++R T SY+   +RF  + R F++QY+ +Y+ R+  MR  L AAA  KWG        G ++    +K+ D V       VIGT+FK M L+PS+L E  +E      L P P     YT   D LV+EDE+ RVTL+G  +PVG  VTG +VA  G  +
Sbjct:   90 EPSTHEGLE-DEERIERATCSYSNESERFLLQERNFSRQYAQIYSVRIMAMRKKLAAAARRKWG--------GRESKFELKKLSD-VKIDEKCFVIGTLFKKMELKPSILKEISEE----HNLMPQPS-RVKYTEDSDELVIEDETERVTLTGN-IPVGTSVTGSIVALCGHTI 247          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|156375394|ref|XP_001630066.1| (predicted protein [Nematostella vectensis] >gi|156217079|gb|EDO38003.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 107.071 bits (266), Expect = 2.264e-23
Identity = 67/171 (39.18%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   33 PGNQDGRERSEEKLQRVTLSYTPTYQRFRAKARTFTQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGR 203
            P +Q+     E K+ R T SY    +RFR K R+F +QYS  Y  RL  MR  L AAA  KWG   P  K  E            +       +IGT+FK M L+P +L E   E  L   LQP+     NY S +D +VLEDES RV L+G  + VG  ++G ++A  GR
Sbjct:   23 PNSQECGIEDENKVDRATCSYENLSERFRLKERSFGRQYSQFYAVRLMAMRKKLAAAARRKWGNSLPIKKLTE------------LKLDEKCCIIGTLFKKMELKPCVLKEMSAEQNL--LLQPSRA---NYVSDDDFMVLEDESERVVLTGN-IEVGSSISGTIMALSGR 175          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|593798592|ref|XP_007162334.1| (hypothetical protein PHAVU_001G143200g [Phaseolus vulgaris] >gi|561035798|gb|ESW34328.1| hypothetical protein PHAVU_001G143200g [Phaseolus vulgaris])

HSP 1 Score: 104.76 bits (260), Expect = 8.582e-23
Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 0
Query:   46 LQRVTLSYTPTYQRFRAKARTFT-QQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGG 207
            ++RV  SY    + F+ +   F  QQYSH+Y  RL LMR +L  +    W    P          +C  +++L +G +  +++GT++K M L+P +LDEY  + ++   ++P      N+  S+D LVLEDESGRV LSG  +P  ++VTG+VVA  G+  G 
Sbjct:    5 MERVQCSYGSLDETFKIRKEMFHGQQYSHIYFARLHLMRTLL-YSLVPHWKPNFP----------VC-TVLELEEG-KECVIVGTLYKHMKLKPCILDEYSKQKSVVPLVKPH-----NFMDSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGA 149          
BLAST of EWM27298.1 vs. NCBI_GenBank
Match: gi|593798568|ref|XP_007162322.1| (hypothetical protein PHAVU_001G142200g [Phaseolus vulgaris] >gi|561035786|gb|ESW34316.1| hypothetical protein PHAVU_001G142200g [Phaseolus vulgaris])

HSP 1 Score: 104.375 bits (259), Expect = 9.393e-23
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   45 KLQRVTLSYTPTYQRFRAKARTFT-QQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDGKEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEAALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKGRAVGG 207
            +++RV  SY    + F+ +   F  QQYSH+Y  RL LMR +L  +    W    P          +C  +++L +G +  +++GT++K M L+P +LDEY  + +    ++P      N+  S+D LVLEDESGRV LSG  +P  ++VTG+VVA  G+  G 
Sbjct:    2 RMERVQCSYGCLDETFKIRKEMFHGQQYSHIYFARLHLMRTLL-YSLVPHWKPNFP----------VC-TVLELEEG-KECVIVGTLYKHMKLKPCILDEYSKQKSAVPLVKPH-----NFMHSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGA 147          
The following BLAST results are available for this feature:
BLAST of EWM27298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109482|gb|EWM27298.1|1.273e-153100.00polymerase (dna directed) delta regulatory subunit... [more]
gi|553188328|ref|XP_005854777.1|5.578e-10799.34polymerase delta regulatory subunit [Nannochlorops... [more]
gi|298711679|emb|CBJ32730.1|1.774e-2638.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|291238172|ref|XP_002738996.1|1.401e-2443.13PREDICTED: DNA polymerase delta subunit 2-like iso... [more]
gi|470528918|ref|XP_004367984.1|2.045e-2434.01DNA polymerase epsilon subunit B protein [Acantham... [more]
gi|1005450288|ref|XP_015762343.1|2.349e-2438.01PREDICTED: DNA polymerase delta subunit 2-like [Ac... [more]
gi|1176123134|ref|XP_020632913.1|5.252e-2439.08DNA polymerase delta subunit 2-like [Orbicella fav... [more]
gi|156375394|ref|XP_001630066.1|2.264e-2339.18predicted protein [Nematostella vectensis] >gi|156... [more]
gi|593798592|ref|XP_007162334.1|8.582e-2336.20hypothetical protein PHAVU_001G143200g [Phaseolus ... [more]
gi|593798568|ref|XP_007162322.1|9.393e-2335.98hypothetical protein PHAVU_001G142200g [Phaseolus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3384rna3384Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications