EWM27315.1, cds3358 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|585109513|gb|EWM27315.1| (chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0 Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query: 1 MRRPRQGASREDLSVRGEQRQSSPSFFSSSSISVLTFLLLSTSGTLALPIGMHPGHVASCRQTYAFHFVKPMTGISEAMSAPVSPARRARGQVTALAKVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFGAASSPVQIKSSCLLSCN 396
MRRPRQGASREDLSVRGEQRQSSPSFFSSSSISVLTFLLLSTSGTLALPIGMHPGHVASCRQTYAFHFVKPMTGISEAMSAPVSPARRARGQVTALAKVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFGAASSPVQIKSSCLLSCN
Sbjct: 1 MRRPRQGASREDLSVRGEQRQSSPSFFSSSSISVLTFLLLSTSGTLALPIGMHPGHVASCRQTYAFHFVKPMTGISEAMSAPVSPARRARGQVTALAKVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFGAASSPVQIKSSCLLSCN 396
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|375332061|gb|AFA52570.1| (chaperonin [Vaucheria litorea]) HSP 1 Score: 303.138 bits (775), Expect = 2.728e-94 Identity = 144/278 (51.80%), Postives = 205/278 (73.74%), Query Frame = 0
Query: 102 KLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
K + + +E+ +KL+ GIN VA+ V+ TLGP+GRNVVL R+ G PE++NDGVTIARDI+L DP +VGA+L++ VA KSD+ AGDGTTT+T+MTQ ++N G + + +GAN + + RG+K ASEFL+ +IK+L++P++ +D++ +A IASGSAVMG+II++ FE+VG G V+EES T+ DE+DFTEG+ E G++ FV D R E+ KP +LVT+ I + E++ LLE+ S+ L I+AED+ GEA ALV+NK RG L V A+K P FG
Sbjct: 43 KKVSFGEESRKKLVEGINQVANAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIARDISLEDPEHNVGARLVQEVAQKSDNRAGDGTTTATVMTQAIVNNGLRSVTSGANPVELRRGIKIASEFLIKQIKELSKPVNGIKDLNSVATIASGSAVMGSIISQAFEKVGETGSTVVEESQTLTDEVDFTEGLTIERGYLSPYFVGDKERQVCEMLKPKILVTDRKIDQVNELIPLLESMVKSKEPLFIVAEDVTGEALSALVVNKMRGVLDVCAIKAPSFG 320
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|1210532053|dbj|GAX09481.1| (chaperonin GroEL [Fistulifera solaris]) HSP 1 Score: 299.286 bits (765), Expect = 1.027e-92 Identity = 150/299 (50.17%), Postives = 210/299 (70.23%), Query Frame = 0
Query: 81 APVSPARRARGQVTALAKVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
AP+ P +++ L + K + +R+++ Q L+ GIN VAD V+ TLGP+GRNVVL R+ G PE++NDGVTIAR+I L DP +VGAKLI+ VASKSDS AGDGTTTST+MTQ L+N G K + +G N +G+ RG++KA+ + +IK++A+P+S +D+ ++A IASGS MG IIA ++VG G V+EES T++DE++FTEG+ + G++ FV D R AEL P +LVT+ I ++ ++V LLE ++ LLIIAED+ GEA ALV+NK RG L V A+K PGFG
Sbjct: 19 APLKPPQQS------LVILDAKKVSFREQSRQALVDGINQVADAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIVLRDPEQNVGAKLIQEVASKSDSKAGDGTTTSTIMTQALVNNGMKAVTSGVNPVGLNRGIRKAARVITDEIKKIAKPVSGIDDLKNVATIASGSIEMGRIIAMAADKVGDTGSTVVEESQTLVDEVEFTEGLTIDRGYISPYFVKDQERQVAELVNPKILVTDAKIDDVNDIVPLLEQIVKTKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFG 311
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|1210525706|dbj|GAX15522.1| (chaperonin GroEL [Fistulifera solaris]) HSP 1 Score: 298.13 bits (762), Expect = 2.208e-92 Identity = 148/288 (51.39%), Postives = 205/288 (71.18%), Query Frame = 0
Query: 92 QVTALAKVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
Q +L + K + +R+++ Q L+ GIN VAD V+ TLGP+GRNVVL R+ G PE++NDGVTIAR+I L DP +VGAKLI+ VASKSDS AGDGTTTST+MTQ L+N G K + +G N +G+ RG++KA+ + +IK++A+P+S +D+ ++A IASGS MG IIA ++VG G V+EES T++DE++FTEG+ + G++ FV D R AEL P +LVT+ I ++ ++V LLE ++ LLIIAED+ GEA ALV+NK RG L V A+K PGFG
Sbjct: 25 QQQSLVILDAKKVSFREQSRQALVDGINQVADAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIVLRDPEQNVGAKLIQEVASKSDSKAGDGTTTSTIMTQALVNNGMKAVTSGVNPVGLNRGIRKAARVITDEIKRIAKPVSGIDDLKNVATIASGSIEMGRIIAMAADKVGDTGSTVVEESQTLVDEVEFTEGLTIDRGYISPYFVKDQERQVAELVNPKILVTDAKIDDVNDIVPLLEQIVKTKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFG 312
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|224004005|ref|XP_002291674.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973450|gb|EED91781.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 295.434 bits (755), Expect = 2.882e-91 Identity = 144/281 (51.25%), Postives = 202/281 (71.89%), Query Frame = 0
Query: 99 VTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
++ K + +++E+ +KL+ GIN VA+ VK TLGP+GRNVVL R+ G PE++NDGVTIAR+I+L DP +VG +L++ VASKSDS AGDGTTTST+MTQ ++N G K + +G N I + G+KK++ + KIK+L++ I+ ED+ +A IASGS MG IIA+ F++VG NG VIEES T+ DEI+FTEG+ + G++ FV D R AEL P +LVT+ I N+ E+V LLE ++ +L+IAED+ G+A ALV+NK RG L V A++ PGFG
Sbjct: 38 LSAKRVSFKEESRKKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREISLADPECNVGVRLVQEVASKSDSKAGDGTTTSTIMTQAIVNNGMKAVTSGVNPIALNAGIKKSAGMVAAKIKELSQKINGVEDLQSVATIASGSVDMGRIIAQAFDKVGENGSTVIEESQTLFDEIEFTEGLTIDRGYISPYFVKDQERQVAELVNPRILVTDAKIDNVNEIVPLLEQLVKTKEPVLMIAEDVTGDALSALVVNKMRGVLDVVAIRAPGFG 318
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|676391243|ref|XP_009038899.1| (hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens] >gi|323450439|gb|EGB06320.1| hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens]) HSP 1 Score: 308.145 bits (788), Expect = 6.466e-91 Identity = 152/283 (53.71%), Postives = 208/283 (73.50%), Query Frame = 0
Query: 98 KVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIA-SGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
K+ K + + D + +L+AGINAVAD VK TLGP+GRNVVL R G PE++NDGVTIARDI L DPAM++GAKLI+ VASKSDS AGDGTTTSTL+TQ L+N+G K + +G N + + RGM KA++ L++++ LA+P+ S++++ +IA +A SG+AVMGAIIAK FE+VG G +EES T+ DE++FTEG+ + G+V FV D R E+ P +LVT+ I N+ +++ LLE ++ +L+IIAED+ GEA ALV+NK RG L V A+K PGFG
Sbjct: 28 KLEAKKVLFGDASRAQLVAGINAVADAVKVTLGPKGRNVVLERAYGAPEIVNDGVTIARDIELDDPAMNIGAKLIQEVASKSDSKAGDGTTTSTLLTQELVNQGMKAVSSGVNPVALRRGMSKATDALIVEVTALAKPVDSNDELLNIATVATSGNAVMGAIIAKAFEKVGDTGSTTMEESQTLTDEVEFTEGLTIDRGYVSPYFVNDQERQLCEMLDPKILVTDQKIENVNDLIPLLEACVKTKERLVIIAEDVVGEALSALVVNKMRGVLDVVAIKAPGFG 310
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|585106610|gb|EWM24977.1| (chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 293.893 bits (751), Expect = 1.893e-90 Identity = 151/295 (51.19%), Postives = 205/295 (69.49%), Query Frame = 0
Query: 86 ARRARGQVTALAKVTPKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIAS-GSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
ARR T +AK + +++ QKL+ GIN VA+ VK TLGP+GRNVVL R G PE++NDGVTIARDI L DP +VG KL++ VA+KSD AGDGTTTST+MTQ ++N+G + + AGAN + + RG++ ++ L +KQ+A+P+ S++D+ IA +A+ G+A MGA+IAK FE VG +G V+EES T+ DE++FTEG++ + G+V FV D R EL KP VLVT IS + E++ LLE A S+ L I+AED+ GEA ALV+NK RG L V A+K PGFG
Sbjct: 51 ARRGSLTTTMMAKN----VRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFG 341
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|219111583|ref|XP_002177543.1| (nuclear-encoded-like protein of chloroplast gro [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410428|gb|EEC50357.1| nuclear-encoded-like protein of chloroplast gro [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 291.967 bits (746), Expect = 4.329e-90 Identity = 143/278 (51.44%), Postives = 201/278 (72.30%), Query Frame = 0
Query: 102 KLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASGSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
K + +++++ + L+AGIN VAD V+ TLGP+GRNVVL R+ G PE++NDGVTIAR+I+L DP +VGA+LI+ VA+KSDS AGDGTTTST+MTQ L+N G + + AG + +G+ RG++KA+ + +I +A P+S ED+ ++A IASGS MG IIA+ ++VG G V+EES T++DEI+FTEG+ + G++ FV D R AEL P +LVT+ I ++ ++V LLE ++ LLIIAED+ GEA ALV+NK RG L V A+K PGFG
Sbjct: 27 KKVSFKEDSRRALVAGINKVADAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIAREISLRDPEENVGARLIQEVAAKSDSKAGDGTTTSTIMTQALVNNGMRAVTAGVSPVGLNRGLRKAARIIADEITAIATPVSGIEDLKNVATIASGSIEMGRIIAQAADKVGDTGSTVVEESQTLIDEIEFTEGLTIDRGYISPYFVKDQERQVAELVNPKILVTDAKIDDVNDIVPLLEQLVKTKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFG 304
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|544209459|ref|XP_005535132.1| (chroloplast chaperonin CPN60, precursor [Cyanidioschyzon merolae strain 10D] >gi|449015444|dbj|BAM78846.1| chroloplast chaperonin CPN60, precursor [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 290.812 bits (743), Expect = 2.282e-89 Identity = 144/279 (51.61%), Postives = 199/279 (71.33%), Query Frame = 0
Query: 102 KLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIASG-SAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
K + + +E+ ++L+ GINAVAD V+ TLGP+GRNVVL R G PEV+NDGVTIARDI+L DP +VGA+L++ VASK+D AGDGTTTST++ Q +IN+G K++ +GAN I + RG+ KA + L +I++LA PI S +DI IA IASG S G IIA+ FERVG NG ++EES T+ D+++F+EGM + G++ FV + R LE+P +L+T+ ISN+ E++ +LE + LLIIA+D+ GEA LV+NK RG L V A+K PGFG
Sbjct: 48 KQVVFHEESRRRLVRGINAVADAVRITLGPKGRNVVLERSYGAPEVVNDGVTIARDISLEDPTENVGARLLQEVASKTDQRAGDGTTTSTVLAQSIINQGLKLVESGANPIALKRGLDKAGQLLRAEIRKLAVPIKSPKDIEAIATIASGNSEEFGRIIAQAFERVGENGSTIVEESQTITDDVEFSEGMEIDRGYLSPYFVKEQDRQTCTLERPRILITDMKISNVNEIIPILEQCVKDKEPLLIIADDVTGEALSTLVVNKMRGVLDVCAIKAPGFG 326
BLAST of EWM27315.1 vs. NCBI_GenBank
Match: gi|545711646|ref|XP_005708129.1| (chaperonin GroEL [Galdieria sulphuraria] >gi|452824607|gb|EME31609.1| chaperonin GroEL [Galdieria sulphuraria]) HSP 1 Score: 290.812 bits (743), Expect = 3.873e-89 Identity = 144/280 (51.43%), Postives = 200/280 (71.43%), Query Frame = 0
Query: 101 PKLIYYRDETAQKLIAGINAVADVVKSTLGPRGRNVVLMRDVGYPEVINDGVTIARDINLPDPAMHVGAKLIKAVASKSDSIAGDGTTTSTLMTQVLINKGYKMIMAGANAIGIWRGMKKASEFLLLKIKQLARPISSSEDIHHIANIAS-GSAVMGAIIAKGFERVGTNGQVVIEESPTMLDEIDFTEGMNYENGFVDSGFVTDTGRNCAELEKPFVLVTNHVISNLREMVTLLETFANSERQLLIIAEDIKGEAREALVMNKERGSLKVAAMKGPGFG 379
PK I +R+++ L GINAVAD V+ TLGP+GRNVVL R G P+V+NDGVTIARDI+L DP + GA+L+ VASK+D AGDGTTTS ++TQ ++N+G K++ +GANA+ + RG+ K +E+++ +I+++A+P+ EDI IA IAS G +GA IA+ + RVG NG +EES +++DE++ TEGM + GF+ FV D R AEL +P VLVT+ IS ++E+V LLE+ S+ LLII +D+ GEA LV+NK RG L VAA+K PGFG
Sbjct: 82 PKQIVFREDSRNALARGINAVADAVRITLGPKGRNVVLERSYGAPQVVNDGVTIARDISLSDPLENTGARLVVEVASKTDQKAGDGTTTSAVLTQAIVNQGLKIVSSGANAMSVRRGITKTAEYIVSEIRKVAKPLRGQEDIRAIATIASGGDETIGANIAEAYSRVGENGSTTVEESQSLMDEVEVTEGMELDRGFISPYFVKDQERQVAELTRPRVLVTDSKISVVQELVPLLESLVKSKEPLLIICDDLTGEALSTLVVNKMRGVLDVAAIKAPGFG 361 The following BLAST results are available for this feature:
BLAST of EWM27315.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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