EWM30330.1, cds332 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|585112989|gb|EWM30330.1| (elongation factor p [Nannochloropsis gaditana]) HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 Query: 1 MVKILERLVIAVTSLSVSSTFLLPQTGKLLSHSTPKNGFPRKNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYLIIQVDGGPQRQRLQFEGNSGSLMKLLTVSVRHY 263 MVKILERLVIAVTSLSVSSTFLLPQTGKLLSHSTPKNGFPRKNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYLIIQVDGGPQRQRLQFEGNSGSLMKLLTVSVRHY Sbjct: 1 MVKILERLVIAVTSLSVSSTFLLPQTGKLLSHSTPKNGFPRKNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYLIIQVDGGPQRQRLQFEGNSGSLMKLLTVSVRHY 263
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|544212884|ref|XP_005536590.1| (chloroplast translation elongation factor P [Cyanidioschyzon merolae strain 10D] >gi|449017152|dbj|BAM80554.1| chloroplast translation elongation factor P [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 227.254 bits (578), Expect = 9.506e-71 Identity = 115/200 (57.50%), Postives = 141/200 (70.50%), Query Frame = 0 Query: 38 GFPRKNVI-------VGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 G PR+ V + + SND + GL+IEVDG+P +VIE LHVKPGKGAAFVR+KLKNLLTG+TME+TFRAGE+V EAQV K E Q++Y + Y FMN+ T+E E VP V + +L G V +TKWN + I+ E+P EVVETDP +GNTAQG SKPAKL +G V VP+FIEVGEKIKVDTR +YL Sbjct: 62 GVPRRPVAERWWSPRMDVNSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNTMERTFRAGETVPEAQVEKFEAQYTYSAENEYVFMNMATFEEEHVPNEV--VGDTAKYLRVGQDVSVTKWNGKPIEVEVPATLTLEVVETDPGVRGNTAQGGSKPAKLETGVVVQVPLFIEVGEKIKVDTRTGSYL 259
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|545705565|ref|XP_005705102.1| (elongation factor EF-P [Galdieria sulphuraria] >gi|452821553|gb|EME28582.1| elongation factor EF-P [Galdieria sulphuraria]) HSP 1 Score: 217.238 bits (552), Expect = 6.864e-67 Identity = 111/212 (52.36%), Postives = 143/212 (67.45%), Query Frame = 0 Query: 30 LSHSTPKNGFPR-----------KNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 L+H FPR + V + SND++ G +I VDG+ RVIEFLHVKPGKGAAFVR+KLKNL TGST+EKTFRAGE +DEA + K +MQ +Y +G+ Y FMNLE+ + E + K+ + Q +L EG V I K N R +D E+PPN + EVV T+P KGNTAQG +KPA L +G TV VP+F+E G+K+KVDTRE Y+ Sbjct: 47 LAHPISWRLFPRDRTSLFKASSYRQVTAVINSNDIRPGTTILVDGSVHRVIEFLHVKPGKGAAFVRTKLKNLETGSTVEKTFRAGERIDEATLDKLDMQLAYIEGEQYVFMNLESLDEERISKSSLSSAAQ-KYLKEGESVSILKHNGRVLDLEIPPNVVLEVVYTEPGIKGNTAQGGTKPATLETGVTVNVPLFVETGDKVKVDTREDKYI 257
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|499751357|ref|WP_011432091.1| (elongation factor P [Synechococcus sp. JA-2-3B'a(2-13)] >gi|123724484|sp|Q2JP65.1|EFP_SYNJB RecName: Full=Elongation factor P; Short=EF-P >gi|86556473|gb|ABD01430.1| translation elongation factor P [Synechococcus sp. JA-2-3B'a(2-13)]) HSP 1 Score: 214.542 bits (545), Expect = 7.452e-67 Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 0 Query: 48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 ++SNDL+ G+S+E+DG P +VIEFLHVKPGKGAAFVR+KLKN+ TG+ +EKTFRAGE++ A + K EMQ+ Y +G++ FM++ETYE P T + + +L E M V I +WN + ID ELP + EVVETDP KG+TA G +KPAKL +GA + VP+FI+VGE+I+VDTR TYL Sbjct: 2 ISSNDLRPGVSVEIDGAPYKVIEFLHVKPGKGAAFVRTKLKNMQTGNVVEKTFRAGETLPAATIEKVEMQYLYAEGNNLVFMDMETYEQ--APITAAQIGSAVKYLKENMQVSILRWNGQVIDVELPNTVVLEVVETDPGVKGDTATGGTKPAKLETGAEIQVPLFIKVGERIRVDTRTDTYL 182
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|515893331|ref|WP_017323914.1| (elongation factor P [Synechococcus sp. PCC 7336]) HSP 1 Score: 213.001 bits (541), Expect = 2.816e-66 Identity = 102/183 (55.74%), Postives = 134/183 (73.22%), Query Frame = 0 Query: 48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 ++SND + G SIE+DG+P +V+EFLHVKPGKG+AFVR+KLKN+ TG+ MEKTFRAGE V +A + K +MQ+ Y DGD Y FM++E+YE P T + Q +L +GM V I +WN+ I ELP + EVVETDP KG+TA G +KPAKL +GA + VP+FI++GE IKVDTR +YL Sbjct: 2 ISSNDFRTGTSIELDGSPWKVLEFLHVKPGKGSAFVRTKLKNMQTGNVMEKTFRAGEMVPQANLEKVDMQYLYKDGDDYVFMDMESYEQS--PLTEAQIGEQIKYLKDGMDVAILRWNELVIAVELPNTVVLEVVETDPGVKGDTATGGTKPAKLETGAEIQVPLFIKIGETIKVDTRNDSYL 182
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|1194461468|gb|OUC15020.1| (elongation factor P [Alkalinema sp. CACIAM 70d]) HSP 1 Score: 211.46 bits (537), Expect = 1.592e-65 Identity = 101/183 (55.19%), Postives = 137/183 (74.86%), Query Frame = 0 Query: 48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 ++SND + G+SIE+DG RV+EFLHVKPGKGAAFVR+KLKN+ TG +E+TFRAGE+V +A + K+ MQ +Y DGD Y FM++ETY+ EG T + ++ +L EGM V + KW D+ ++ ELP + + EV+E DP KG+TA G +KPAK+ +GATV VP+FI VGEKI+VDTR+ YL Sbjct: 2 ISSNDFRPGVSIELDGAVWRVVEFLHVKPGKGAAFVRTKLKNVQTGGVVERTFRAGETVPQATLEKSTMQHTYKDGDEYVFMDMETYD-EG-RLTAAQIGDRVKYLKEGMEVDVVKWGDKVMEVELPNSVVLEVIEADPGVKGDTATGGTKPAKVETGATVMVPLFISVGEKIRVDTRDDKYL 182
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|499749400|ref|WP_011430134.1| (elongation factor P [Synechococcus sp. JA-3-3Ab] >gi|123765609|sp|Q2JUZ8.1|EFP_SYNJA RecName: Full=Elongation factor P; Short=EF-P >gi|86554496|gb|ABC99454.1| translation elongation factor P [Synechococcus sp. JA-3-3Ab]) HSP 1 Score: 208.764 bits (530), Expect = 1.502e-64 Identity = 97/183 (53.01%), Postives = 134/183 (73.22%), Query Frame = 0 Query: 48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 ++SNDL+ G+S+E+DG P +VIEFLHVKPGKGAAFVR+KLKN+ TG+ +EKTFRAGE + A + K MQ+ Y +GD++ FM++ETYE P + + + +L E M V I +W + ID ELP + EVVETDP +G+TA G +KPAKL +GA + VP+FI+VGE+++VDTR TY+ Sbjct: 2 ISSNDLRPGVSVEIDGAPYKVIEFLHVKPGKGAAFVRTKLKNMQTGNVVEKTFRAGEMLPAATIEKVNMQYLYSEGDNFVFMDMETYEQ--APLSAAQIGSAVKYLKENMEVAILRWKGQVIDVELPNTVVLEVVETDPGVRGDTATGGTKPAKLETGAEIQVPLFIKVGERVRVDTRTDTYI 182
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|518322977|ref|WP_019493184.1| (MULTISPECIES: elongation factor P [Calothrix] >gi|1115292627|gb|OKH55665.1| elongation factor P [Calothrix sp. HK-06]) HSP 1 Score: 208.764 bits (530), Expect = 1.502e-64 Identity = 100/183 (54.64%), Postives = 138/183 (75.41%), Query Frame = 0 Query: 48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 ++SND + G+SI +DG+ RV+EFLHVKPGKGAAFVR+KLKN +G+T+E+TFRAGE+V +A + K+ MQ +Y +GD Y FM++ETYE EG T + ++ +L EGM + +WN++ +D ELP + + EV+ETDP KG+TA G SKPAKL +GATV VP+FI GE+I++DTRE YL Sbjct: 2 ISSNDFRPGVSIVLDGSVWRVVEFLHVKPGKGAAFVRTKLKNAQSGNTVERTFRAGETVPQANLEKSTMQHTYKEGDEYVFMDMETYE-EG-RLTAQQIGDKVKYLKEGMEANVVRWNEQVLDVELPNSVVLEVIETDPGVKGDTATGGSKPAKLETGATVMVPLFIAQGERIRIDTREDKYL 182
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|1012116647|ref|XP_015961283.1| (uncharacterized protein LOC107485285 [Arachis duranensis]) HSP 1 Score: 210.305 bits (534), Expect = 1.951e-64 Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = 0 Query: 45 IVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 I LTSND+K G ++EVDG P RV+EFLHVKPGKGAAFVR+KLKN +TG+T+EKTFRAG S+DEA V+K QFSY DG Y FM+L T+E + ++ E ++ +L EGM + WN + ID +LP VV+ DP KG+TAQG SKPA L++GA V VP+F+ +GE+I VDTR Y+ Sbjct: 51 IYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKLKNYVTGNTVEKTFRAGSSIDEANVVKETKQFSYKDGSQYVFMDLNTFEESRLGES--EVGDKTKWLKEGMDCNLLFWNGKVIDLDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNIGEEIMVDTRTGQYM 234
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|1021510664|ref|XP_016198612.1| (uncharacterized protein LOC107639587 [Arachis ipaensis]) HSP 1 Score: 210.305 bits (534), Expect = 2.247e-64 Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = 0 Query: 45 IVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230 I LTSND+K G ++EVDG P RV+EFLHVKPGKGAAFVR+KLKN +TG+T+EKTFRAG S+DEA V+K QFSY DG Y FM+L T+E + ++ E ++ +L EGM + WN + ID +LP VV+ DP KG+TAQG SKPA L++GA V VP+F+ +GE+I VDTR Y+ Sbjct: 51 IYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKLKNYVTGNTVEKTFRAGSSIDEANVVKETKQFSYKDGSQYVFMDLNTFEESRLGES--EVGDKTKWLKEGMDCNLLFWNGKVIDLDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNIGEEIMVDTRTGQYM 234 The following BLAST results are available for this feature:
BLAST of EWM30330.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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