EWM30330.1, cds332 (CDS) Nannochloropsis gaditana

Overview
NameEWM30330.1
Unique Namecds332
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:822069..822093 -
Alignment locationCM002455.1:821947..821996 -
Alignment locationCM002455.1:821746..821871 -
Alignment locationCM002455.1:821062..821340 -
Alignment locationCM002455.1:820686..820894 -
Alignment locationCM002455.1:820533..820635 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30330.1
Productelongation factor p
Orig transcript idgnl|cribi|Naga_100003g164.1847.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:822069..822093 -
CM002455.1supercontigCM002455.1:821947..821996 -
CM002455.1supercontigCM002455.1:821746..821871 -
CM002455.1supercontigCM002455.1:821062..821340 -
CM002455.1supercontigCM002455.1:820686..820894 -
CM002455.1supercontigCM002455.1:820533..820635 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003746translation elongation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO:0043043peptide biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR013852Transl_elong_P/YeiP_CS
IPR013185Transl_elong_KOW-like
IPR014722Rib_L2_dom2
IPR012340NA-bd_OB-fold
IPR001059Transl_elong_P/YeiP_cen
IPR011768Transl_elongation_fac_P
IPR015365Elong-fact-P_C
Homology
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|585112989|gb|EWM30330.1| (elongation factor p [Nannochloropsis gaditana])

HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MVKILERLVIAVTSLSVSSTFLLPQTGKLLSHSTPKNGFPRKNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYLIIQVDGGPQRQRLQFEGNSGSLMKLLTVSVRHY 263
            MVKILERLVIAVTSLSVSSTFLLPQTGKLLSHSTPKNGFPRKNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYLIIQVDGGPQRQRLQFEGNSGSLMKLLTVSVRHY
Sbjct:    1 MVKILERLVIAVTSLSVSSTFLLPQTGKLLSHSTPKNGFPRKNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYLIIQVDGGPQRQRLQFEGNSGSLMKLLTVSVRHY 263          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|544212884|ref|XP_005536590.1| (chloroplast translation elongation factor P [Cyanidioschyzon merolae strain 10D] >gi|449017152|dbj|BAM80554.1| chloroplast translation elongation factor P [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 227.254 bits (578), Expect = 9.506e-71
Identity = 115/200 (57.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query:   38 GFPRKNVI-------VGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            G PR+ V        + + SND + GL+IEVDG+P +VIE LHVKPGKGAAFVR+KLKNLLTG+TME+TFRAGE+V EAQV K E Q++Y   + Y FMN+ T+E E VP  V    +   +L  G  V +TKWN + I+ E+P     EVVETDP  +GNTAQG SKPAKL +G  V VP+FIEVGEKIKVDTR  +YL
Sbjct:   62 GVPRRPVAERWWSPRMDVNSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNTMERTFRAGETVPEAQVEKFEAQYTYSAENEYVFMNMATFEEEHVPNEV--VGDTAKYLRVGQDVSVTKWNGKPIEVEVPATLTLEVVETDPGVRGNTAQGGSKPAKLETGVVVQVPLFIEVGEKIKVDTRTGSYL 259          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|545705565|ref|XP_005705102.1| (elongation factor EF-P [Galdieria sulphuraria] >gi|452821553|gb|EME28582.1| elongation factor EF-P [Galdieria sulphuraria])

HSP 1 Score: 217.238 bits (552), Expect = 6.864e-67
Identity = 111/212 (52.36%), Postives = 143/212 (67.45%), Query Frame = 0
Query:   30 LSHSTPKNGFPR-----------KNVIVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            L+H      FPR           + V   + SND++ G +I VDG+  RVIEFLHVKPGKGAAFVR+KLKNL TGST+EKTFRAGE +DEA + K +MQ +Y +G+ Y FMNLE+ + E + K+   +  Q  +L EG  V I K N R +D E+PPN + EVV T+P  KGNTAQG +KPA L +G TV VP+F+E G+K+KVDTRE  Y+
Sbjct:   47 LAHPISWRLFPRDRTSLFKASSYRQVTAVINSNDIRPGTTILVDGSVHRVIEFLHVKPGKGAAFVRTKLKNLETGSTVEKTFRAGERIDEATLDKLDMQLAYIEGEQYVFMNLESLDEERISKSSLSSAAQ-KYLKEGESVSILKHNGRVLDLEIPPNVVLEVVYTEPGIKGNTAQGGTKPATLETGVTVNVPLFVETGDKVKVDTREDKYI 257          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|499751357|ref|WP_011432091.1| (elongation factor P [Synechococcus sp. JA-2-3B'a(2-13)] >gi|123724484|sp|Q2JP65.1|EFP_SYNJB RecName: Full=Elongation factor P; Short=EF-P >gi|86556473|gb|ABD01430.1| translation elongation factor P [Synechococcus sp. JA-2-3B'a(2-13)])

HSP 1 Score: 214.542 bits (545), Expect = 7.452e-67
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 0
Query:   48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            ++SNDL+ G+S+E+DG P +VIEFLHVKPGKGAAFVR+KLKN+ TG+ +EKTFRAGE++  A + K EMQ+ Y +G++  FM++ETYE    P T  +  +   +L E M V I +WN + ID ELP   + EVVETDP  KG+TA G +KPAKL +GA + VP+FI+VGE+I+VDTR  TYL
Sbjct:    2 ISSNDLRPGVSVEIDGAPYKVIEFLHVKPGKGAAFVRTKLKNMQTGNVVEKTFRAGETLPAATIEKVEMQYLYAEGNNLVFMDMETYEQ--APITAAQIGSAVKYLKENMQVSILRWNGQVIDVELPNTVVLEVVETDPGVKGDTATGGTKPAKLETGAEIQVPLFIKVGERIRVDTRTDTYL 182          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|515893331|ref|WP_017323914.1| (elongation factor P [Synechococcus sp. PCC 7336])

HSP 1 Score: 213.001 bits (541), Expect = 2.816e-66
Identity = 102/183 (55.74%), Postives = 134/183 (73.22%), Query Frame = 0
Query:   48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            ++SND + G SIE+DG+P +V+EFLHVKPGKG+AFVR+KLKN+ TG+ MEKTFRAGE V +A + K +MQ+ Y DGD Y FM++E+YE    P T  +   Q  +L +GM V I +WN+  I  ELP   + EVVETDP  KG+TA G +KPAKL +GA + VP+FI++GE IKVDTR  +YL
Sbjct:    2 ISSNDFRTGTSIELDGSPWKVLEFLHVKPGKGSAFVRTKLKNMQTGNVMEKTFRAGEMVPQANLEKVDMQYLYKDGDDYVFMDMESYEQS--PLTEAQIGEQIKYLKDGMDVAILRWNELVIAVELPNTVVLEVVETDPGVKGDTATGGTKPAKLETGAEIQVPLFIKIGETIKVDTRNDSYL 182          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|1194461468|gb|OUC15020.1| (elongation factor P [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 211.46 bits (537), Expect = 1.592e-65
Identity = 101/183 (55.19%), Postives = 137/183 (74.86%), Query Frame = 0
Query:   48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            ++SND + G+SIE+DG   RV+EFLHVKPGKGAAFVR+KLKN+ TG  +E+TFRAGE+V +A + K+ MQ +Y DGD Y FM++ETY+ EG   T  +  ++  +L EGM V + KW D+ ++ ELP + + EV+E DP  KG+TA G +KPAK+ +GATV VP+FI VGEKI+VDTR+  YL
Sbjct:    2 ISSNDFRPGVSIELDGAVWRVVEFLHVKPGKGAAFVRTKLKNVQTGGVVERTFRAGETVPQATLEKSTMQHTYKDGDEYVFMDMETYD-EG-RLTAAQIGDRVKYLKEGMEVDVVKWGDKVMEVELPNSVVLEVIEADPGVKGDTATGGTKPAKVETGATVMVPLFISVGEKIRVDTRDDKYL 182          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|499749400|ref|WP_011430134.1| (elongation factor P [Synechococcus sp. JA-3-3Ab] >gi|123765609|sp|Q2JUZ8.1|EFP_SYNJA RecName: Full=Elongation factor P; Short=EF-P >gi|86554496|gb|ABC99454.1| translation elongation factor P [Synechococcus sp. JA-3-3Ab])

HSP 1 Score: 208.764 bits (530), Expect = 1.502e-64
Identity = 97/183 (53.01%), Postives = 134/183 (73.22%), Query Frame = 0
Query:   48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            ++SNDL+ G+S+E+DG P +VIEFLHVKPGKGAAFVR+KLKN+ TG+ +EKTFRAGE +  A + K  MQ+ Y +GD++ FM++ETYE    P +  +  +   +L E M V I +W  + ID ELP   + EVVETDP  +G+TA G +KPAKL +GA + VP+FI+VGE+++VDTR  TY+
Sbjct:    2 ISSNDLRPGVSVEIDGAPYKVIEFLHVKPGKGAAFVRTKLKNMQTGNVVEKTFRAGEMLPAATIEKVNMQYLYSEGDNFVFMDMETYEQ--APLSAAQIGSAVKYLKENMEVAILRWKGQVIDVELPNTVVLEVVETDPGVRGDTATGGTKPAKLETGAEIQVPLFIKVGERVRVDTRTDTYI 182          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|518322977|ref|WP_019493184.1| (MULTISPECIES: elongation factor P [Calothrix] >gi|1115292627|gb|OKH55665.1| elongation factor P [Calothrix sp. HK-06])

HSP 1 Score: 208.764 bits (530), Expect = 1.502e-64
Identity = 100/183 (54.64%), Postives = 138/183 (75.41%), Query Frame = 0
Query:   48 LTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            ++SND + G+SI +DG+  RV+EFLHVKPGKGAAFVR+KLKN  +G+T+E+TFRAGE+V +A + K+ MQ +Y +GD Y FM++ETYE EG   T  +  ++  +L EGM   + +WN++ +D ELP + + EV+ETDP  KG+TA G SKPAKL +GATV VP+FI  GE+I++DTRE  YL
Sbjct:    2 ISSNDFRPGVSIVLDGSVWRVVEFLHVKPGKGAAFVRTKLKNAQSGNTVERTFRAGETVPQANLEKSTMQHTYKEGDEYVFMDMETYE-EG-RLTAQQIGDKVKYLKEGMEANVVRWNEQVLDVELPNSVVLEVIETDPGVKGDTATGGSKPAKLETGATVMVPLFIAQGERIRIDTREDKYL 182          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|1012116647|ref|XP_015961283.1| (uncharacterized protein LOC107485285 [Arachis duranensis])

HSP 1 Score: 210.305 bits (534), Expect = 1.951e-64
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = 0
Query:   45 IVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            I  LTSND+K G ++EVDG P RV+EFLHVKPGKGAAFVR+KLKN +TG+T+EKTFRAG S+DEA V+K   QFSY DG  Y FM+L T+E   + ++  E  ++  +L EGM   +  WN + ID +LP      VV+ DP  KG+TAQG SKPA L++GA V VP+F+ +GE+I VDTR   Y+
Sbjct:   51 IYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKLKNYVTGNTVEKTFRAGSSIDEANVVKETKQFSYKDGSQYVFMDLNTFEESRLGES--EVGDKTKWLKEGMDCNLLFWNGKVIDLDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNIGEEIMVDTRTGQYM 234          
BLAST of EWM30330.1 vs. NCBI_GenBank
Match: gi|1021510664|ref|XP_016198612.1| (uncharacterized protein LOC107639587 [Arachis ipaensis])

HSP 1 Score: 210.305 bits (534), Expect = 2.247e-64
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = 0
Query:   45 IVGLTSNDLKNGLSIEVDGTPMRVIEFLHVKPGKGAAFVRSKLKNLLTGSTMEKTFRAGESVDEAQVMKTEMQFSYDDGDSYQFMNLETYETEGVPKTVFETNNQGSFLLEGMVVQITKWNDRTIDAELPPNYIYEVVETDPNFKGNTAQGASKPAKLNSGATVTVPMFIEVGEKIKVDTREATYL 230
            I  LTSND+K G ++EVDG P RV+EFLHVKPGKGAAFVR+KLKN +TG+T+EKTFRAG S+DEA V+K   QFSY DG  Y FM+L T+E   + ++  E  ++  +L EGM   +  WN + ID +LP      VV+ DP  KG+TAQG SKPA L++GA V VP+F+ +GE+I VDTR   Y+
Sbjct:   51 IYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKLKNYVTGNTVEKTFRAGSSIDEANVVKETKQFSYKDGSQYVFMDLNTFEESRLGES--EVGDKTKWLKEGMDCNLLFWNGKVIDLDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNIGEEIMVDTRTGQYM 234          
The following BLAST results are available for this feature:
BLAST of EWM30330.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112989|gb|EWM30330.1|0.000e+0100.00elongation factor p [Nannochloropsis gaditana][more]
gi|544212884|ref|XP_005536590.1|9.506e-7157.50chloroplast translation elongation factor P [Cyani... [more]
gi|545705565|ref|XP_005705102.1|6.864e-6752.36elongation factor EF-P [Galdieria sulphuraria] >gi... [more]
gi|499751357|ref|WP_011432091.1|7.452e-6755.74elongation factor P [Synechococcus sp. JA-2-3B'a(2... [more]
gi|515893331|ref|WP_017323914.1|2.816e-6655.74elongation factor P [Synechococcus sp. PCC 7336][more]
gi|1194461468|gb|OUC15020.1|1.592e-6555.19elongation factor P [Alkalinema sp. CACIAM 70d][more]
gi|499749400|ref|WP_011430134.1|1.502e-6453.01elongation factor P [Synechococcus sp. JA-3-3Ab] >... [more]
gi|518322977|ref|WP_019493184.1|1.502e-6454.64MULTISPECIES: elongation factor P [Calothrix] >gi|... [more]
gi|1012116647|ref|XP_015961283.1|1.951e-6454.84uncharacterized protein LOC107485285 [Arachis dura... [more]
gi|1021510664|ref|XP_016198612.1|2.247e-6454.84uncharacterized protein LOC107639587 [Arachis ipae... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna332rna332Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications