EWM27367.1, cds3307 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|585109585|gb|EWM27367.1| (mannose-binding 2 [Nannochloropsis gaditana]) HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0 Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0
Query: 1 MVVVRGDARSESRLLCLVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFDGCDASIRYHGERADFSVTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFNDLDVHPEADDLIVTPKFGRGVDLSVEERLDRVEVHTFFPLLIFFPPSHLLPLSHPSPSHPLFLARGALFHLPVQIHPLLIRSFSSFSFLPSLPSPLFSGHDVADPPPPGRDAGAQRASAGRHPGPYSQYH 397
MVVVRGDARSESRLLCLVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFDGCDASIRYHGERADFSVTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFNDLDVHPEADDLIVTPKFGRGVDLSVEERLDRVEVHTFFPLLIFFPPSHLLPLSHPSPSHPLFLARGALFHLPVQIHPLLIRSFSSFSFLPSLPSPLFSGHDVADPPPPGRDAGAQRASAGRHPGPYSQYH
Sbjct: 1 MVVVRGDARSESRLLCLVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFDGCDASIRYHGERADFSVTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFNDLDVHPEADDLIVTPKFGRGVDLSVEERLDRVEVHTFFPLLIFFPPSHLLPLSHPSPSHPLFLARGALFHLPVQIHPLLIRSFSSFSFLPSLPSPLFSGHDVADPPPPGRDAGAQRASAGRHPGPYSQYH 397
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|669161884|ref|XP_008616504.1| (hypothetical protein SDRG_12219 [Saprolegnia diclina VS20] >gi|530731695|gb|EQC29937.1| hypothetical protein SDRG_12219 [Saprolegnia diclina VS20]) HSP 1 Score: 224.172 bits (570), Expect = 7.364e-66 Identity = 119/271 (43.91%), Postives = 168/271 (61.99%), Query Frame = 0
Query: 13 RLLCLVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADF-SVTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTF---NDLDVHPEADDL 278
RLL L+ A++G+ SG + SHSF PF V G RF++ W+ G +V ++FVRLTPDRQ++ G +WS ALG D+ + ++FRI G GKK+FGDGIG W+ SPY + G HG+ AF GVG+ DTF N EH H+DV + +N+G ++ + GCD + RYH + +F +V ++SR +LTIE N + V+IDP+ + W C L LP +WL A VGLTG+TG LADNHDV+S +F ND+++ D+
Sbjct: 3 RLLVLL----AAIVGLASGVALQSHSFRPPFTKVDYQGVRFINDTWTTGGTAEVMKSFVRLTPDRQNRNGHVWSRDALGRDSFSAVMQFRISGTGKKWFGDGIGLWLTTSPYVR-GSNHGIDAAFNGVGIVIDTFVNPEHKGGHKDVTIQINDGTKTLATLQDETKIGCDGAFRYHEDSDEFDAVYSASRLRLTIERNNIKVEIDPKSKAEWTACYEGQLP---LPANWLETARVGLTGSTGGLADNHDVLSFLSFSEPNDIEMQLTDSDV 265
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|1173948454|gb|OQR96582.1| (lectin [Achlya hypogyna]) HSP 1 Score: 218.779 bits (556), Expect = 1.039e-63 Identity = 113/254 (44.49%), Postives = 158/254 (62.20%), Query Frame = 0
Query: 30 SGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADF-SVTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTF---NDLDVHPEADDL 278
S MLSHSF PF+ V G R ++ WS G T+V ++FVRLTPDRQ++ G +WS + LG ++ + L+FRI G GKK+FGDGIG W+M SPY + G HGV AF GVG+ DTF N+EH H+DV V +N+G ++ E + GCD + RYH + DF +V +SSR +L +E N L +++DP+ + W C T +WL A VG+TG+TG LADNHDV+S + ND+++ D+
Sbjct: 15 SANEMLSHSFRPPFDKVDYQGVRVINDTWSIGGTTEVLKSFVRLTPDRQNRNGYVWSREVLGRESFSAILQFRISGTGKKWFGDGIGLWLMTSPYVR-GQNHGVDPAFTGVGIVIDTFVNSEHKGGHKDVTVQINDGTKTLETLQDEAKIGCDGAFRYHEDSDDFDAVYSSSRLRLVVERNNLKIEVDPKSKAEWVACYE---GTLPFAANWLESARVGITGSTGGLADNHDVLSFLAYSEPNDMELQLADSDI 264
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|673043903|ref|XP_008875912.1| (hypothetical protein H310_11132 [Aphanomyces invadans] >gi|574468192|gb|ETV95211.1| hypothetical protein H310_11132 [Aphanomyces invadans]) HSP 1 Score: 216.083 bits (549), Expect = 1.193e-62 Identity = 108/264 (40.91%), Postives = 163/264 (61.74%), Query Frame = 0
Query: 17 LVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADFS-VTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFNDL-DVHPEADD 277
++ C LA + + + +HSF+APF + GKR V+ W+ G T+V NF+RLTPDRQSK G +W++ L + + L+FRI GQG+K+FGDGIG W+ SP+ ++GD HG + GVG+ DTF N+EH H+DV + +N+G ++ E + GCDA++RYH + A F V +SSR ++ ++G L +++D + W C DL LP WL+ +G+TG+TG LADNHD++S F+D D+H + D
Sbjct: 5 VILACLLAFVLECASIKLDAHSFAAPFKTIDRTGKRIVNSTWTNGGSTEVFTNFIRLTPDRQSKHGHVWNNAPLQRNTFSAVLQFRISGQGQKWFGDGIGLWLTNSPHHEDGDNHGFKDKYFGVGIIIDTFVNSEHKGGHKDVTIQINDGTKTTEVLQDETKIGCDAALRYHEDSAHFDPVFSSSRLRVVVDGVKLKLEVDAKSTAEWKSCYEGDLP---LPSDWLQNVSLGITGSTGGLADNHDILSFLAFSDADDIHMQMAD 265
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|813184520|ref|XP_012206432.1| (hypothetical protein SPRG_12013 [Saprolegnia parasitica CBS 223.65] >gi|641528663|gb|KDO22876.1| hypothetical protein SPRG_12013 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 214.542 bits (545), Expect = 3.718e-62 Identity = 112/271 (41.33%), Postives = 162/271 (59.78%), Query Frame = 0
Query: 13 RLLCLVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADF-SVTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTF---NDLDVHPEADDL 278
RLL L+ C +G+ G + SHSF P+ V G R ++ W+ G +V ++FVRLTPDRQ++ G +WS ALG D+ + ++FRI G GKK+FGDGIG W+ SPY + G HG+ AF GVG+ DTF N EH H+DV + +N+G ++ + GCD + RYH + +F +V ++SR + TIE N + V+IDP+ + W C L +WL A +GLTG+TG LADNHDV+S +F ND+++ D+
Sbjct: 3 RLLVLLAAC----VGLAQGAALQSHSFRPPYTKVDYQGVRVINDTWTTGGTAEVMKSFVRLTPDRQNRNGHVWSQDALGRDSFSAVMQFRISGTGKKWFGDGIGLWLTSSPYVR-GSNHGIDAAFNGVGIVIDTFVNPEHKGGHKDVTIQINDGTKTLSTLQDETKIGCDGAFRYHEDSDEFDAVYSASRLRFTIERNNIKVEIDPKSKAEWTACYEGQLP---FAANWLETARIGLTGSTGGLADNHDVLSFLSFSEPNDIEMQLTDSDV 265
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|698823491|ref|XP_009844774.1| (hypothetical protein H257_17608 [Aphanomyces astaci] >gi|574100136|gb|ETV65722.1| hypothetical protein H257_17608 [Aphanomyces astaci]) HSP 1 Score: 210.305 bits (534), Expect = 1.918e-60 Identity = 105/236 (44.49%), Postives = 150/236 (63.56%), Query Frame = 0
Query: 37 HSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADFS-VTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFNDLD 270
HSFS PF + GKR V+ WS G T+V +NF+RLTPDRQSK G +W+ LG + + L+FRI GQGKK+FGDGIG W+ +P ++GD HG +VGVG+ DTF N+EH H+DV + +N+G ++ + + GCDA++R+H E A F V +SSR ++ ++G L +++D + W C DL LP WL+ VG+TG+TG LADNHDV+ +F++ D
Sbjct: 25 HSFSGPFKTLDRAGKRIVNSTWSHGGSTEVLKNFIRLTPDRQSKHGNVWNTAPLGRNTFSAVLQFRISGQGKKWFGDGIGLWLTHTPTHEDGDNHGFKDQYVGVGIVIDTFVNSEHKGGHKDVTIQINDGTKTTDTLQDETKIGCDAALRFHEESAHFDPVFSSSRLRIVVDGVKLKLEVDAKSTSEWKPCYEGDLP---LPSDWLQDVTVGITGSTGGLADNHDVLGFLSFSEAD 257
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|301104294|ref|XP_002901232.1| (lectin, putative [Phytophthora infestans T30-4] >gi|262101166|gb|EEY59218.1| lectin, putative [Phytophthora infestans T30-4]) HSP 1 Score: 210.305 bits (534), Expect = 2.212e-60 Identity = 101/255 (39.61%), Postives = 153/255 (60.00%), Query Frame = 0
Query: 15 LCLVWMCCLAMIGIVSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADFS-VTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFN 267
+ L+ L+ + +S + + ++ P+ V DG+R +S D G T+V +NF+RLTPDRQSK G +WS ++ D + + +RIHGQGKK+FGDGIG W P W+ GD HG + G G+ DTF N EH H+DV + +N+G + +++ GCDA+ RYH A+F V +SSR ++ I+GN L V +DP G W +C +L N WLR+A +G++ +TG LADNHD++ + +F+
Sbjct: 8 VTLMSAAALSFLATMSAAPLQALTYKQPYEVVDSDGRRQISDDIIFGGTTEVKKNFIRLTPDRQSKRGHIWSKSSINRDELATVITYRIHGQGKKWFGDGIGLWFTHEPQWKNGDNHGFIDKYTGFGIVLDTFHNVEHRGGHKDVTIQINDGTKRLDDLNDENKIGCDAAFRYHSNSANFDPVYSSSRIRIKIKGNALEVDVDPNNTGTWTECHKGNLPFQN---DWLRRATLGISASTGALADNHDILRVQSFD 259
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|673043905|ref|XP_008875913.1| (hypothetical protein H310_11133 [Aphanomyces invadans] >gi|574468193|gb|ETV95212.1| hypothetical protein H310_11133 [Aphanomyces invadans]) HSP 1 Score: 209.149 bits (531), Expect = 5.665e-60 Identity = 101/240 (42.08%), Postives = 150/240 (62.50%), Query Frame = 0
Query: 31 GELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADFSVTNS-SRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFND 268
E ++S SF P++ V +G+R+++ W G T+V +NF+RLTPDRQ K G +W+++ +G D+ L FRI GQGKK+FGDGIG W+ S + GD HG F GVG+ DTF N +H H+DV+V +N+G ++ +++ GCDA++RYH E A F+ +S SR K+ + G LS+++D + W QC +T WLR + +G+TG TG +ADNHDV+ L T+ D
Sbjct: 22 AEKVVSLSFDGPYDSVDTNGQRYINGTWIHGGSTEVKKNFIRLTPDRQDKKGYIWNNQVIGRDSFATVLTFRISGQGKKWFGDGIGLWLTSSQNYVYGDNHGFDSDFRGVGIIIDTFNNPDHKGGHKDVSVQINDGSKTLQQLNDETKVGCDAALRYHEESAAFNAAHSASRIKVKVVGQILSIEVDEKNTAAWKQCYE---TTLPFSADWLRTSTLGITGATGGVADNHDVLRLATYED 258
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|1173948450|gb|OQR96578.1| (lectin [Achlya hypogyna]) HSP 1 Score: 207.223 bits (526), Expect = 2.761e-59 Identity = 108/242 (44.63%), Postives = 153/242 (63.22%), Query Frame = 0
Query: 29 VSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD--GCDASIRYHGERADFS-VTNSSRAKLTI-EGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTF 266
V M + SFS PF+ + +G+R+V+ W G T+V + FVRLTPDRQSK G LW+++ +G D + L FRI GQGKK+FGDGIG W+ S +Q GD HG F GVG+ DTF N EH H+DV++ VN+G ++ +VL GCDA++RY+ E F+ V +++R K+ I E N L V +D + +G W +C DL+ LP WL +A VG++ TG +ADNHDV+ L ++
Sbjct: 19 VDAAKMDALSFSGPFDKIDANGQRYVNGSWIYGGSTEVKKGFVRLTPDRQSKKGYLWNNERIGRDTFSTILTFRISGQGKKWFGDGIGLWITTSDNYQYGDNHGFVGDFTGVGIILDTFVNPEHKGGHKDVSIQVNDGTKTL-DVLNDETKIGCDAAVRYYEESDSFNPVHSAARIKVKIDEANRLRVDVDAKNEGAWTRCYEGDLA---LPRGWLARATVGISAATGGVADNHDVLKLSSY 256
BLAST of EWM27367.1 vs. NCBI_GenBank
Match: gi|675183119|ref|XP_008900444.1| (hypothetical protein PPTG_07827 [Phytophthora parasitica INRA-310] >gi|567968621|gb|ETK93748.1| hypothetical protein L915_03122 [Phytophthora parasitica] >gi|568026246|gb|ETM00239.1| hypothetical protein L917_03022 [Phytophthora parasitica] >gi|568056727|gb|ETM53433.1| hypothetical protein L914_03096 [Phytophthora parasitica] >gi|568099461|gb|ETN14175.1| hypothetical protein PPTG_07827 [Phytophthora parasitica INRA-310] >gi|570958689|gb|ETP23668.1| hypothetical protein F441_03228 [Phytophthora parasitica CJ01A1] >gi|570994593|gb|ETP51683.1| hypothetical protein F442_03223 [Phytophthora parasitica P10297] >gi|970629597|gb|KUF76813.1| VIP36 protein [Phytophthora nicotianae]) HSP 1 Score: 206.068 bits (523), Expect = 9.248e-59 Identity = 101/241 (41.91%), Postives = 146/241 (60.58%), Query Frame = 0
Query: 29 VSGELMLSHSFSAPFNDVQVDGKRFVSRDWSPAGETQVNQNFVRLTPDRQSKIGALWSHKALGVDAVTMTLKFRIHGQGKKFFGDGIGFWVMESPYWQEGDLHGVSHAFVGVGVAFDTFRNTEHGTRHRDVAVFVNNGDRSREEVLTGFD-GCDASIRYHGERADFS-VTNSSRAKLTIEGNTLSVQIDPRGQGNWFQCTTVDLSTYNLPEHWLRKAHVGLTGTTGQLADNHDVISLHTFN 267
VS + + +F P+ V DG+R +S D G T+V +NF+RLTPDRQSK G +WS ++ D + + +RIHGQGKK+FGDGIG W P W+ GD HG + + G G+ DTF N EH H+DV + VN+G + +++ GCDA+ RYH A+F V +SSR ++ I+G L V +DP G W +C +L N WLR+A G++ +TG LADNHD++ + +F+
Sbjct: 20 VSAAPLQALTFKQPYEVVNSDGRRQISDDIIYGGTTEVKKNFIRLTPDRQSKRGHIWSKSSINRDELATVITYRIHGQGKKWFGDGIGLWFTHEPQWKNGDNHGFTDKYTGFGIVLDTFHNVEHRGGHKDVTIQVNDGTKRLDDLNDENKIGCDAAFRYHSNSANFDPVYSSSRIRVKIKGIALEVDVDPNNTGTWTECYKGNLPFQN---DWLRRATFGISASTGALADNHDILRVQSFD 257 The following BLAST results are available for this feature:
BLAST of EWM27367.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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