EWM27376.1, cds3292 (CDS) Nannochloropsis gaditana

Overview
NameEWM27376.1
Unique Namecds3292
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:47406..47837 +

Link to JBrowse

Properties
Property NameValue
Start range47406
Start range.
Protein idEWM27376.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100438g5.1491.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:47406..47837 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM27376.1 vs. NCBI_GenBank
Match: gi|585109601|gb|EWM27376.1| (hypothetical protein Naga_100438g5, partial [Nannochloropsis gaditana])

HSP 1 Score: 285.804 bits (730), Expect = 1.258e-97
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 
Query:    1 SLPPSLPQERGPSRLLDPWLCPGHLWHGADSRQYHNLSFCPALPPALLAGHGKGGVREGRKGRRRGGRGRPQCAFLVCGAGDDVWWWGRDGMREKHDSVVEAMVAIGWRGKQVVDDGGGSGHPSEMRRRATGNLSPREIHTRG 143
            SLPPSLPQERGPSRLLDPWLCPGHLWHGADSRQYHNLSFCPALPPALLAGHGKGGVREGRKGRRRGGRGRPQCAFLVCGAGDDVWWWGRDGMREKHDSVVEAMVAIGWRGKQVVDDGGGSGHPSEMRRRATGNLSPREIHTRG
Sbjct:    1 SLPPSLPQERGPSRLLDPWLCPGHLWHGADSRQYHNLSFCPALPPALLAGHGKGGVREGRKGRRRGGRGRPQCAFLVCGAGDDVWWWGRDGMREKHDSVVEAMVAIGWRGKQVVDDGGGSGHPSEMRRRATGNLSPREIHTRG 143
The following BLAST results are available for this feature:
BLAST of EWM27376.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109601|gb|EWM27376.1|1.258e-97100.00hypothetical protein Naga_100438g5, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3301rna3301Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications