EWM27383.1, cds3290 (CDS) Nannochloropsis gaditana

Overview
NameEWM27383.1
Unique Namecds3290
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:45462..45477 -
Alignment locationCM002461.1:44948..44972 -
Alignment locationCM002461.1:44692..44743 -
Alignment locationCM002461.1:44485..44559 -
Alignment locationCM002461.1:44283..44349 -
Alignment locationCM002461.1:44063..44127 -
Alignment locationCM002461.1:43853..43942 -
Alignment locationCM002461.1:43623..43725 -
Alignment locationCM002461.1:42864..43398 -
Alignment locationCM002461.1:42626..42681 -
Alignment locationCM002461.1:42402..42470 -
Alignment locationCM002461.1:42082..42177 -
Alignment locationCM002461.1:41930..42037 -
Alignment locationCM002461.1:40713..40878 -
Alignment locationCM002461.1:40493..40560 -
Alignment locationCM002461.1:40323..40357 -
Alignment locationCM002461.1:40194..40244 -
Alignment locationCM002461.1:40004..40087 -
Alignment locationCM002461.1:39659..39745 -
Alignment locationCM002461.1:39472..39534 -
Alignment locationCM002461.1:39206..39304 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27383.1
Productcaspase-like protein
Orig transcript idgnl|cribi|Naga_100328g2.173.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:45462..45477 -
CM002461.1supercontigCM002461.1:44948..44972 -
CM002461.1supercontigCM002461.1:44692..44743 -
CM002461.1supercontigCM002461.1:44485..44559 -
CM002461.1supercontigCM002461.1:44283..44349 -
CM002461.1supercontigCM002461.1:44063..44127 -
CM002461.1supercontigCM002461.1:43853..43942 -
CM002461.1supercontigCM002461.1:43623..43725 -
CM002461.1supercontigCM002461.1:42864..43398 -
CM002461.1supercontigCM002461.1:42626..42681 -
CM002461.1supercontigCM002461.1:42402..42470 -
CM002461.1supercontigCM002461.1:42082..42177 -
CM002461.1supercontigCM002461.1:41930..42037 -
CM002461.1supercontigCM002461.1:40713..40878 -
CM002461.1supercontigCM002461.1:40493..40560 -
CM002461.1supercontigCM002461.1:40323..40357 -
CM002461.1supercontigCM002461.1:40194..40244 -
CM002461.1supercontigCM002461.1:40004..40087 -
CM002461.1supercontigCM002461.1:39659..39745 -
CM002461.1supercontigCM002461.1:39472..39534 -
CM002461.1supercontigCM002461.1:39206..39304 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004197cysteine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0019538protein metabolic process
GO:0006355regulation of transcription, DNA-templated
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR029030Caspase-like_dom
IPR007282NOT
IPR011600Pept_C14_caspase
Homology
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|585109610|gb|EWM27383.1| (caspase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1393.25 bits (3605), Expect = 0.000e+0
Identity = 669/669 (100.00%), Postives = 669/669 (100.00%), Query Frame = 0
Query:    1 MGLDTSRDTTACPRNNMDALKAAFGKQLEKQANKVIGDVLGKVTGGNVKMPGALSEEEAPAPVPFSSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIHVRGREGGRQGGRKGGREGGREERERERERTGETCRKDRMEEGRRRGKKEKKESKKSRDVPQGWNGREKGGAKARKGPGKIGGQTPLSRFHNLLFLSCPDYRPLSFPTSYAYPQAYAAEELYRREWRFHKEMKLWVKLEKGEYFYFDINNWTKRSFPQTTPANISAITSGLLSEEDVRMQFPAGGGAPLPLTAASVVQGGAVATTSPSLSGMLPPPMMGQGMGGDAKGQEKSLRGDDKPRKRLRAWETEFIKGIKASMETTFCIFYRAIDEMNISQEGDFKTTEGQVIGVAPTSIPDYEGVRKRKNIETSRTAEDRVNRQLILAGVMNPEEKSYCLRAGLAKGFYNFKGRVEDLERVIWRGKCINKKCRESQAATVRMLLDQPDNGADHILHKAKGAVVVCSVCEERMYVTRLCEGRPEKDTGKFHHHCKDCGGLGICTRNATNAHCRYCHHHFDTGIFQTAQCPCKETVVVCCSVA 669
            MGLDTSRDTTACPRNNMDALKAAFGKQLEKQANKVIGDVLGKVTGGNVKMPGALSEEEAPAPVPFSSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIHVRGREGGRQGGRKGGREGGREERERERERTGETCRKDRMEEGRRRGKKEKKESKKSRDVPQGWNGREKGGAKARKGPGKIGGQTPLSRFHNLLFLSCPDYRPLSFPTSYAYPQAYAAEELYRREWRFHKEMKLWVKLEKGEYFYFDINNWTKRSFPQTTPANISAITSGLLSEEDVRMQFPAGGGAPLPLTAASVVQGGAVATTSPSLSGMLPPPMMGQGMGGDAKGQEKSLRGDDKPRKRLRAWETEFIKGIKASMETTFCIFYRAIDEMNISQEGDFKTTEGQVIGVAPTSIPDYEGVRKRKNIETSRTAEDRVNRQLILAGVMNPEEKSYCLRAGLAKGFYNFKGRVEDLERVIWRGKCINKKCRESQAATVRMLLDQPDNGADHILHKAKGAVVVCSVCEERMYVTRLCEGRPEKDTGKFHHHCKDCGGLGICTRNATNAHCRYCHHHFDTGIFQTAQCPCKETVVVCCSVA
Sbjct:    1 MGLDTSRDTTACPRNNMDALKAAFGKQLEKQANKVIGDVLGKVTGGNVKMPGALSEEEAPAPVPFSSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIHVRGREGGRQGGRKGGREGGREERERERERTGETCRKDRMEEGRRRGKKEKKESKKSRDVPQGWNGREKGGAKARKGPGKIGGQTPLSRFHNLLFLSCPDYRPLSFPTSYAYPQAYAAEELYRREWRFHKEMKLWVKLEKGEYFYFDINNWTKRSFPQTTPANISAITSGLLSEEDVRMQFPAGGGAPLPLTAASVVQGGAVATTSPSLSGMLPPPMMGQGMGGDAKGQEKSLRGDDKPRKRLRAWETEFIKGIKASMETTFCIFYRAIDEMNISQEGDFKTTEGQVIGVAPTSIPDYEGVRKRKNIETSRTAEDRVNRQLILAGVMNPEEKSYCLRAGLAKGFYNFKGRVEDLERVIWRGKCINKKCRESQAATVRMLLDQPDNGADHILHKAKGAVVVCSVCEERMYVTRLCEGRPEKDTGKFHHHCKDCGGLGICTRNATNAHCRYCHHHFDTGIFQTAQCPCKETVVVCCSVA 669          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|802100460|gb|KKA27494.1| (hypothetical protein TD95_001799 [Thielaviopsis punctulata])

HSP 1 Score: 181.415 bits (459), Expect = 4.031e-47
Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 0
Query:   67 SDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIH 193
            S+C+GR+KA+ +GINYF T+A+L GCINDV NV  FIME+YG+ RE++ +LTD+       PTR NIL A+RWLV GA   D+LFFHYSGHGG A+D DGDE D +DE I PVDF+ AG I+DDEIH
Sbjct:  107 SNCTGRRKALLIGINYFNTEAQLRGCINDVHNVSRFIMEKYGYKREDMVILTDDQTEERSIPTRANILRAMRWLVSGAQPNDALFFHYSGHGGQAKDTDGDEEDGYDEVIYPVDFKTAGHIVDDEIH 233          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|1183366682|gb|ORX92922.1| (metacaspase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 176.022 bits (445), Expect = 4.828e-46
Identity = 86/157 (54.78%), Postives = 107/157 (68.15%), Query Frame = 0
Query:   37 GDVLGKVTGGNVKMPGALSEEEAPAPVPFSSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIH 193
            G  +G+V G NV +                SDC GRKKA+F+GINYF + +EL GCINDV NV+ F+  +YGFS +N  +LTD+    ++ PTR NI+  LRWLVEGA+ GDSLF H+SGHGG+ +D DGDEVD  DETI PVD E AG I+DDEIH
Sbjct:   13 GAYVGQVNGENVSV----------------SDCRGRKKALFIGINYFGSGSELRGCINDVHNVKNFVFSRYGFSEQNSVILTDDQQDPSKIPTRDNIIRGLRWLVEGASMGDSLFLHFSGHGGSIKDEDGDEVDGHDETIYPVDHERAGVIVDDEIH 153          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|1183379777|gb|ORY05241.1| (metacaspase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 175.637 bits (444), Expect = 2.626e-45
Identity = 80/128 (62.50%), Postives = 95/128 (74.22%), Query Frame = 0
Query:   67 SDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIHV 194
            SDC G KKA+FVGINYF T AEL GCINDVKN+  F+   +GF+ +N  VLTD+    ++ PTR NIL  ++WLVEGA  GDSLFFHYSGHGG+ +D DGDEVD  DETI P+D E AG I DDE+H 
Sbjct:   70 SDCRGNKKALFVGINYFNTSAELRGCINDVKNIMNFVTNNFGFNPQNCLVLTDDQQDPSKIPTRNNILLGMKWLVEGAQPGDSLFFHYSGHGGSTQDTDGDEVDGKDETIYPLDHEQAGMIHDDEMHA 197          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|1198308553|gb|OUM65244.1| (hypothetical protein PIROE2DRAFT_25262, partial [Piromyces sp. E2])

HSP 1 Score: 172.94 bits (437), Expect = 3.342e-45
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   71 GRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIH 193
            G KKA+F+GINY  TKAEL GCINDVKNV   + +++GF  +N   LTDE    N+ PT  NI++ ++WLV+GA +GDSLFFHYSGHGGTARD DGDEVD +DETILP+D+E AGQILDD I+
Sbjct:    1 GNKKALFIGINYTGTKAELKGCINDVKNVSQLVCQRFGF--QNCLYLTDEQQDSNKKPTYNNIIEGMKWLVQGAKSGDSLFFHYSGHGGTARDADGDEVDGYDETILPLDYETAGQILDDVIY 121          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|1198308556|gb|OUM65247.1| (hypothetical protein PIROE2DRAFT_25574, partial [Piromyces sp. E2])

HSP 1 Score: 171.785 bits (434), Expect = 1.205e-44
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 0
Query:   66 SSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIH 193
            +S+CSG KKA+F+GINYF T+AEL GCINDVKNV A   +++GF  +N   LTD+    ++ PT  NI++ +RWLVEGA  GDSLFFHYSGHGGTA+D + DE+D FDETILP+D++ +GQI+DD I+
Sbjct:    3 TSNCSGNKKALFIGINYFGTQAELKGCINDVKNVSALFCQRFGF--QNCLYLTDDQQDSSKKPTYENIINGMRWLVEGAKPGDSLFFHYSGHGGTAKDSETDEIDGFDETILPLDYQQSGQIVDDVIY 128          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|242222280|ref|XP_002476865.1| (predicted protein [Postia placenta Mad-698-R] >gi|220723833|gb|EED77935.1| predicted protein, partial [Postia placenta Mad-698-R])

HSP 1 Score: 166.007 bits (419), Expect = 1.460e-44
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0
Query:   56 EEEAPAPVPFSSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIH 193
            +   P   P  S C+GRKKA+ +GINY     ELHGC+ND +NVQ F+++ Y +  ENI +LTD+  + +  PTR NI+DA+RWLV  A   DSLF HYSGHGG  +DLDGDEVD  DE I PVD++  G I+DDE+H
Sbjct:    1 QSRQPKSKPKFSKCTGRKKALCIGINYKGQHNELHGCVNDARNVQRFLIKHYNYREENIFLLTDDTPNLHHQPTRANIIDAMRWLVRDAQPHDSLFLHYSGHGGQTKDLDGDEVDGLDEVIFPVDYKWTGHIVDDEMH 138          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|814602967|gb|KKF97501.1| (Metacaspase-1A [Ceratocystis platani])

HSP 1 Score: 171.785 bits (434), Expect = 3.849e-44
Identity = 81/139 (58.27%), Postives = 102/139 (73.38%), Query Frame = 0
Query:   59 APAPVPFS-SDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEP---PTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIH 193
            AP    F  S+C+GR+KA+ +GINYF T+AEL GCINDV NV  FIM+ +G+ RE++ +LTD+    N+P   PTR NI+ A++WLV GA   D+LFFHYSGHGG A D DGDE D  DETI PVDF+ AG ++DDEIH
Sbjct:   49 APDDYSFKYSNCTGRRKALLIGINYFGTEAELRGCINDVHNVSNFIMQNHGYKREDMVILTDDKT--NDPMSMPTRENIIKAMKWLVSGAEPNDALFFHYSGHGGQAADTDGDEEDGHDETIYPVDFQRAGHVVDDEIH 185          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|1183377084|gb|ORY02639.1| (hypothetical protein K493DRAFT_277186 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 174.481 bits (441), Expect = 1.152e-43
Identity = 78/128 (60.94%), Postives = 95/128 (74.22%), Query Frame = 0
Query:   67 SDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIHV 194
            S+C GRK+A+F+GINYF + AEL GCINDV NV+ F+  +YGFS +   +LTD+    +  PTR NI+  L WLVEGA  GDSLF H+SGHGG+  D DGDEVD FDETI PVD E+AG I+DDEIH 
Sbjct:  221 SNCRGRKRALFIGINYFGSSAELRGCINDVHNVKNFVFSRYGFSEQTSIILTDDQKDPSRIPTRQNIIQGLHWLVEGAAMGDSLFLHFSGHGGSIEDEDGDEVDGFDETIYPVDHESAGVIVDDEIHA 348          
BLAST of EWM27383.1 vs. NCBI_GenBank
Match: gi|527294218|gb|EPS95083.1| (hypothetical protein FOMPIDRAFT_1033049 [Fomitopsis pinicola FP-58527 SS1])

HSP 1 Score: 169.474 bits (428), Expect = 1.191e-43
Identity = 88/187 (47.06%), Postives = 110/187 (58.82%), Query Frame = 0
Query:   62 PVPFSSDCSGRKKAVFVGINYFKTKAELHGCINDVKNVQAFIMEQYGFSRENIKVLTDEPASGNEPPTRTNILDALRWLVEGATAGDSLFFHYSGHGGTARDLDGDEVDNFDETILPVDFEAAGQILDDEIHVRGREGGRQGGR--KGGREGGREERERERERTGETCRKDRMEEGRRRGKKEKKES 246
            P P    C+GRKKA+ +GINY   + EL+GC+ND +NV+ F+M+ + F  ENI VLTD+ A  ++ PTR NILDA+RWLV  A   DSL FHYSGHGG  RDLDGDEVD  DE I PVD++ AG I+DD++H         G R   G   GG         R       D   +GR +G  E   S
Sbjct:   56 PEPQYHPCTGRKKALCIGINYTGQRNELNGCVNDARNVREFLMKNWSFKSENIFVLTDDAAHQHQQPTRENILDAMRWLVRDACPHDSLVFHYSGHGGQTRDLDGDEVDGLDEVIFPVDYKHAGHIVDDDMHKIMVRDLPNGCRLTVGSNNGGSSSELDADIRDISQALFDYHSDGRVKGLSEVTPS 242          
The following BLAST results are available for this feature:
BLAST of EWM27383.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109610|gb|EWM27383.1|0.000e+0100.00caspase-like protein [Nannochloropsis gaditana][more]
gi|802100460|gb|KKA27494.1|4.031e-4762.20hypothetical protein TD95_001799 [Thielaviopsis pu... [more]
gi|1183366682|gb|ORX92922.1|4.828e-4654.78metacaspase [Basidiobolus meristosporus CBS 931.73... [more]
gi|1183379777|gb|ORY05241.1|2.626e-4562.50metacaspase [Basidiobolus meristosporus CBS 931.73... [more]
gi|1198308553|gb|OUM65244.1|3.342e-4564.23hypothetical protein PIROE2DRAFT_25262, partial [P... [more]
gi|1198308556|gb|OUM65247.1|1.205e-4460.16hypothetical protein PIROE2DRAFT_25574, partial [P... [more]
gi|242222280|ref|XP_002476865.1|1.460e-4453.62predicted protein [Postia placenta Mad-698-R] >gi|... [more]
gi|814602967|gb|KKF97501.1|3.849e-4458.27Metacaspase-1A [Ceratocystis platani][more]
gi|1183377084|gb|ORY02639.1|1.152e-4360.94hypothetical protein K493DRAFT_277186 [Basidiobolu... [more]
gi|527294218|gb|EPS95083.1|1.191e-4347.06hypothetical protein FOMPIDRAFT_1033049 [Fomitopsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3299rna3299Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications