EWM27404.1, cds3267 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27404.1 vs. NCBI_GenBank
Match: gi|585109635|gb|EWM27404.1| (serine threonine-prot [Nannochloropsis gaditana]) HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0 Query: 1 MLALGHGRHPPRPSALAYCHKGWKYVVRKRTITSFLPPASYLNTPPSDIAFSSPSLSGLPEPLALHYTLQMLRVIRRLWVEGGMLHCDIRCDNFLMVGQGSLMVIDLGVSLDVRGAEEDQEESVEIQFLGGRAASGYQCRAMRAERSSKRDHGIQEGEMKRGWREDADLYALGASAYCLLHGHSPPSVYFADDMKGNEMKSKKAMKPTCCKGANYWRLKRYWEQEAWTRVLEGLMGADIESLRPTQAVQRLDELCDVLKEVLEGPKGKGLSCLLETVAREMGPFLAGVRAGRL 293 MLALGHGRHPPRPSALAYCHKGWKYVVRKRTITSFLPPASYLNTPPSDIAFSSPSLSGLPEPLALHYTLQMLRVIRRLWVEGGMLHCDIRCDNFLMVGQGSLMVIDLGVSLDVRGAEEDQEESVEIQFLGGRAASGYQCRAMRAERSSKRDHGIQEGEMKRGWREDADLYALGASAYCLLHGHSPPSVYFADDMKGNEMKSKKAMKPTCCKGANYWRLKRYWEQEAWTRVLEGLMGADIESLRPTQAVQRLDELCDVLKEVLEGPKGKGLSCLLETVAREMGPFLAGVRAGRL Sbjct: 1 MLALGHGRHPPRPSALAYCHKGWKYVVRKRTITSFLPPASYLNTPPSDIAFSSPSLSGLPEPLALHYTLQMLRVIRRLWVEGGMLHCDIRCDNFLMVGQGSLMVIDLGVSLDVRGAEEDQEESVEIQFLGGRAASGYQCRAMRAERSSKRDHGIQEGEMKRGWREDADLYALGASAYCLLHGHSPPSVYFADDMKGNEMKSKKAMKPTCCKGANYWRLKRYWEQEAWTRVLEGLMGADIESLRPTQAVQRLDELCDVLKEVLEGPKGKGLSCLLETVAREMGPFLAGVRAGRL 293
BLAST of EWM27404.1 vs. NCBI_GenBank
Match: gi|397632366|gb|EJK70521.1| (hypothetical protein THAOC_08106 [Thalassiosira oceanica]) HSP 1 Score: 76.6406 bits (187), Expect = 5.521e-12 Identity = 64/237 (27.00%), Postives = 104/237 (43.88%), Query Frame = 0 Query: 11 PRPSALAYCHKGWKYVVRKRTITSFLPPASYLNTPPSDIAFSSPSLSGLPEPLALHYTLQMLRVIRRLWVEGGMLHCDIRCDNFLMV---GQGSLMVIDLGVSLDVR--GAEEDQEESVEIQFLGGRAASGYQCRAMRAERSSKRDHGIQEGEMKRGWREDADLYALGASAYCLLHGHSPPSVYFADDMKGNEMKSKKAMKPTCCKGANYWRL----KRYWEQEAWTRVLEGLMGAD 238 PRP +L +G +++ + + F + L+ + + + +PE +A++YT +ML I L EG +LH D++ DN+++ G+ LM++D G S+D+ G D + QF G AA +C AMR R W D DL+ L +SA+ LL G ++ T K WRL +RY +Q+ W+ E L+ D Sbjct: 1017 PRPKSLYAFKEGGTFLMTAASYSGF----TLLDV----VNIFNKIIGKVPELVAIYYTSRMLEHIETLHREGKVLHNDVKADNWVITSSAGKFDLMLVDFGRSVDLERTGGTSD---PIRSQFKGNVAAEDTECVAMRESRP---------------WGIDQDLFGLCSSAHLLLFGSH--------------------IEVTEEKSTGKWRLRKAFRRYHQQDLWSCFFETLVNYD 1207
BLAST of EWM27404.1 vs. NCBI_GenBank
Match: gi|612393348|ref|XP_007512194.1| (predicted protein [Bathycoccus prasinos] >gi|424513660|emb|CCO66282.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 74.7146 bits (182), Expect = 2.784e-11 Identity = 61/253 (24.11%), Postives = 109/253 (43.08%), Query Frame = 0 Query: 58 GLPEPLALHYTLQMLRVIRRLWV-EGGMLHCDIRCDNFLMVGQGS-----------------LMVIDLGVSLDVRGAEEDQEESVEIQFLGGRAASGYQCRAMRAERSSKRDHGIQEGEMKRGWREDADLYALGASAYCLLHGHSPPSVYFADDMKGNEMKSKKAMKPTCCKGANYWRLKRYWEQEAWTRVLEGLMGADIESLRPTQAVQRLDELCDVLKEVLEGPKGKGLSCLLETVAREMGPFLAGVRAGR 292 + E LA++Y++++LR++ W E +LHCD++ DN L+ G L +ID G ++D+R + + QF+G + C MR +S W +D +A+ A+ + +LHG ++ D K + K A LKRYW Q+ W V E LM + + T+ L + +VL++ L+G +G G S + + ++ ++ G+ Sbjct: 965 AMDEKLAMYYSIELLRLLE--WTHESDVLHCDVKPDNLLLRNGGERWLDWDKSRPGSWKKKGLALIDFGRAIDLRDYDANT------QFVGNAGTESFSCPEMRENKS---------------WTYQSDCFAIAATIHVMLHGEYMETI---TDRKMGKYAPKLA-------------LKRYWNQDVWKLVFEKLMNQ--PTTKSTKEKPNLRAIREVLEDALDG-EGTGGSVVKSLLVKQTIGMFELIKEGK 1175 The following BLAST results are available for this feature:
BLAST of EWM27404.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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