EWM27410.1, cds3261 (CDS) Nannochloropsis gaditana

Overview
NameEWM27410.1
Unique Namecds3261
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1187124..1187374 +
Alignment locationCM002460.1:1187459..1187513 +
Alignment locationCM002460.1:1187848..1187909 +
Alignment locationCM002460.1:1188371..1188525 +
Alignment locationCM002460.1:1188701..1188999 +
Alignment locationCM002460.1:1189150..1189305 +
Alignment locationCM002460.1:1189620..1189769 +
Alignment locationCM002460.1:1189934..1190084 +
Alignment locationCM002460.1:1190214..1190325 +
Alignment locationCM002460.1:1190471..1190576 +
Alignment locationCM002460.1:1190749..1191006 +
Alignment locationCM002460.1:1191166..1191243 +
Alignment locationCM002460.1:1191355..1191486 +
Alignment locationCM002460.1:1191621..1191746 +
Alignment locationCM002460.1:1191913..1192295 +
Alignment locationCM002460.1:1192423..1192520 +
Alignment locationCM002460.1:1192665..1192868 +
Alignment locationCM002460.1:1193011..1193111 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27410.1
ProductZinc finger, CCCH-type
Orig transcript idgnl|cribi|Naga_100237g7.1702.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1187124..1187374 +
CM002460.1supercontigCM002460.1:1187459..1187513 +
CM002460.1supercontigCM002460.1:1187848..1187909 +
CM002460.1supercontigCM002460.1:1188371..1188525 +
CM002460.1supercontigCM002460.1:1188701..1188999 +
CM002460.1supercontigCM002460.1:1189150..1189305 +
CM002460.1supercontigCM002460.1:1189620..1189769 +
CM002460.1supercontigCM002460.1:1189934..1190084 +
CM002460.1supercontigCM002460.1:1190214..1190325 +
CM002460.1supercontigCM002460.1:1190471..1190576 +
CM002460.1supercontigCM002460.1:1190749..1191006 +
CM002460.1supercontigCM002460.1:1191166..1191243 +
CM002460.1supercontigCM002460.1:1191355..1191486 +
CM002460.1supercontigCM002460.1:1191621..1191746 +
CM002460.1supercontigCM002460.1:1191913..1192295 +
CM002460.1supercontigCM002460.1:1192423..1192520 +
CM002460.1supercontigCM002460.1:1192665..1192868 +
CM002460.1supercontigCM002460.1:1193011..1193111 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007275YTH_domain
IPR000571Znf_CCCH
IPR013989Dev_and_cell_death_domain
Homology
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|585109643|gb|EWM27410.1| (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 1925.21 bits (4986), Expect = 0.000e+0
Identity = 958/958 (100.00%), Postives = 958/958 (100.00%), Query Frame = 0
Query:    1 MAAGESSLDDELAALSFEIEASSNSDGQDGRGDAGLVPRRGGGRSMAPGSKNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKCVRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKHVHRNPEDAPEQGEFNISSQKAADEAAAAAAEGGNVSGEGNSYPPGASSGLPGNVVGGFGGGRVGEMAGARGGRAGVVVPQQLQLLSMHQQQSQPQHGAASPFGLASGTGMGGGREGGREGGRDRRPGGALERNENYKTTLCNHWLSNKGLCPFGDDCVFAHGETELRKHPLAIAREQQQAHRAGGGRGETDGREGGLGRKIRFPDLGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIYSSSEVSLALGGAEASLPGGGFGGGGGPYGSFGASGGGRGGGGGGGGVLDGGGGNGGGGGAQQDQHPLPRGGEGGGPQQGEGGEGIGQTFPVFSGQGFIFPCTEETLDECLGRGLFSLPAGGALETYAKEVVLPGSTLFLANATDRTLFGIFEAASPVAYNLERTSTSTMYPLQVRIRCLLEAPPLTESDPDVRSILGPLPASSPLGRAGPLSENQTQRLATLLASRAKALPLFLPPSTPTFLSSYSSSSSSSSFLPLLRGPSGKEGGRERGLSLESTGSTSASTSLASTESNSPGAGYRSLPPLATMHLQQKQQQQQQQKQQLQQQQSRLLLGGIGGRGLLNGSSSTTSSSSSSSIVSSMSGTSTGAVVNKGFLEGLSPPRRLGLSPSLSHLSVGSQHHHHHQQQQQQQQQQSSQRQQISQHAHMQQQDQDTQQQLLARPGEQGVLGNSPSSALHLPPFGGGIPPRIQLPASWRPL 958
            MAAGESSLDDELAALSFEIEASSNSDGQDGRGDAGLVPRRGGGRSMAPGSKNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKCVRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKHVHRNPEDAPEQGEFNISSQKAADEAAAAAAEGGNVSGEGNSYPPGASSGLPGNVVGGFGGGRVGEMAGARGGRAGVVVPQQLQLLSMHQQQSQPQHGAASPFGLASGTGMGGGREGGREGGRDRRPGGALERNENYKTTLCNHWLSNKGLCPFGDDCVFAHGETELRKHPLAIAREQQQAHRAGGGRGETDGREGGLGRKIRFPDLGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIYSSSEVSLALGGAEASLPGGGFGGGGGPYGSFGASGGGRGGGGGGGGVLDGGGGNGGGGGAQQDQHPLPRGGEGGGPQQGEGGEGIGQTFPVFSGQGFIFPCTEETLDECLGRGLFSLPAGGALETYAKEVVLPGSTLFLANATDRTLFGIFEAASPVAYNLERTSTSTMYPLQVRIRCLLEAPPLTESDPDVRSILGPLPASSPLGRAGPLSENQTQRLATLLASRAKALPLFLPPSTPTFLSSYSSSSSSSSFLPLLRGPSGKEGGRERGLSLESTGSTSASTSLASTESNSPGAGYRSLPPLATMHLQQKQQQQQQQKQQLQQQQSRLLLGGIGGRGLLNGSSSTTSSSSSSSIVSSMSGTSTGAVVNKGFLEGLSPPRRLGLSPSLSHLSVGSQHHHHHQQQQQQQQQQSSQRQQISQHAHMQQQDQDTQQQLLARPGEQGVLGNSPSSALHLPPFGGGIPPRIQLPASWRPL
Sbjct:    1 MAAGESSLDDELAALSFEIEASSNSDGQDGRGDAGLVPRRGGGRSMAPGSKNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKCVRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKHVHRNPEDAPEQGEFNISSQKAADEAAAAAAEGGNVSGEGNSYPPGASSGLPGNVVGGFGGGRVGEMAGARGGRAGVVVPQQLQLLSMHQQQSQPQHGAASPFGLASGTGMGGGREGGREGGRDRRPGGALERNENYKTTLCNHWLSNKGLCPFGDDCVFAHGETELRKHPLAIAREQQQAHRAGGGRGETDGREGGLGRKIRFPDLGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIYSSSEVSLALGGAEASLPGGGFGGGGGPYGSFGASGGGRGGGGGGGGVLDGGGGNGGGGGAQQDQHPLPRGGEGGGPQQGEGGEGIGQTFPVFSGQGFIFPCTEETLDECLGRGLFSLPAGGALETYAKEVVLPGSTLFLANATDRTLFGIFEAASPVAYNLERTSTSTMYPLQVRIRCLLEAPPLTESDPDVRSILGPLPASSPLGRAGPLSENQTQRLATLLASRAKALPLFLPPSTPTFLSSYSSSSSSSSFLPLLRGPSGKEGGRERGLSLESTGSTSASTSLASTESNSPGAGYRSLPPLATMHLQQKQQQQQQQKQQLQQQQSRLLLGGIGGRGLLNGSSSTTSSSSSSSIVSSMSGTSTGAVVNKGFLEGLSPPRRLGLSPSLSHLSVGSQHHHHHQQQQQQQQQQSSQRQQISQHAHMQQQDQDTQQQLLARPGEQGVLGNSPSSALHLPPFGGGIPPRIQLPASWRPL 958          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|553183787|ref|XP_005853967.1| (hypothetical protein NGA_0456100 [Nannochloropsis gaditana CCMP526] >gi|422295093|gb|EKU22392.1| hypothetical protein NGA_0456100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 335/339 (98.82%), Postives = 335/339 (98.82%), Query Frame = 0
Query:  620 FLANATDRTLFGIFEAASPVAYNLERTSTSTMYPLQVRIRCLLEAPPLTESDPDVRSILGPLPASSPLGRAGPLSENQTQRLATLLASRAKALPLFLPPSTPTFLSSYSSSSSSSSFLPLLRGPSGKEGGRERGLSLESTGSTSASTSLASTESNSPGAGYRSLPPLATMHLQQKQQQQQQQKQQLQQQQSRLLLGGIGGRGLLNGSSSTTSSSSSSSIVSSMSGTSTGAVVNKGFLEGLSPPRRLGLSPSLSHLSVGSQHHHHHQQQQQQQQQQSSQRQQISQHAHMQQQDQDTQQQLLARPGEQGVLGNSPSSALHLPPFGGGIPPRIQLPASWRPL 958
            FLA    RTLFGIFEAASPVAYNLERTSTSTMYPLQVRIRCLLEAPPLTESDPDVRSILGPLPASSPLGRAGPLSENQTQRLATLLASRAKALPLFLPPSTPTFLSSYSSSSSSSSFLPLLRGPSGKEGGRERGLSLESTGSTSASTSLASTESNSPGAGYRSLPPLATMHLQQKQQQQQQQKQQLQQQQSRLLLGGIGGRGLLNGSSSTTSSSSSSSIVSSMSGTSTGAVVNKGFLEGLSPPRRLGLSPSLSHLSVGSQHHHHHQQQQQQQQQQSSQRQQISQHAHMQQQDQDTQQQLLARPGEQGVLGNSPSSALHLPPFGGGIPPRIQLPASWRPL
Sbjct:   46 FLA---PRTLFGIFEAASPVAYNLERTSTSTMYPLQVRIRCLLEAPPLTESDPDVRSILGPLPASSPLGRAGPLSENQTQRLATLLASRAKALPLFLPPSTPTFLSSYSSSSSSSSFLPLLRGPSGKEGGRERGLSLESTGSTSASTSLASTESNSPGAGYRSLPPLATMHLQQKQQQQQQQKQQLQQQQSRLLLGGIGGRGLLNGSSSTTSSSSSSSIVSSMSGTSTGAVVNKGFLEGLSPPRRLGLSPSLSHLSVGSQHHHHHQQQQQQQQQQSSQRQQISQHAHMQQQDQDTQQQLLARPGEQGVLGNSPSSALHLPPFGGGIPPRIQLPASWRPL 381          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|1070921286|gb|OEL17956.1| (Zinc finger CCCH domain-containing protein 45 [Dichanthelium oligosanthes])

HSP 1 Score: 143.28 bits (360), Expect = 2.529e-32
Identity = 89/235 (37.87%), Postives = 122/235 (51.91%), Query Frame = 0
Query:  265 TLCNHWLSNKGLCPFGDDCVFAHGETELRKHPLAIAREQQQAHRAGGGRGETDGREGGLGRKIRFPDLGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY--SSSEVSLALGGAEAS 497
            T+C HWL  +GLC  GD C F H   +  K  + + R           R   + RE     K  + D+      +    +F++KS N +NL  SV++G+W T R+NE  LNEAF + + V+L +S+N + H+QG A MTS I       +        H    +   FS++WL+L  L F  T  LRNP NDNLP+  SRDCQEL P IG QL  L+Y    SE++  L  AEA 
Sbjct:   60 TVCRHWL--RGLCMKGDACGFLH---QFDKARMPVCR---------FFRDFGECREPDCAYKHSYDDV------KECNMYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRHFQGCAKMTSRIGGYIGGGNWKSAHGTAH----YGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAMLVAAEAK 270          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|1026770429|gb|OAE30243.1| (hypothetical protein AXG93_4295s2010 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 144.821 bits (364), Expect = 9.347e-32
Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 0
Query:  329 FPDLGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIYSSSEVSL 489
            F    +P P     RFF++KS N +NL  SV RG+W THRNNE  LNEA+ +CD V+L +SVNE+ H+QG A M S I                H    +   F L+WL+L  L F  TR LRNP N+NLP+  SRDCQEL P +G QL  L+Y   +  L
Sbjct:  262 FTSAAVPLP-HGYCRFFIVKSSNRENLELSVERGLWATHRNNESKLNEAYDSCDHVILIFSVNETRHFQGCARMMSKIGGVAGGGGW----KYAHGTAHYGRNFRLKWLKLCELSFNKTRHLRNPFNENLPVKISRDCQELEPGVGEQLAQLLYIEPDSDL 417          

HSP 2 Score: 87.0409 bits (214), Expect = 9.639e-14
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 0
Query:   42 GGRSMAPGSKN---VVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKC--VRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKH 126
            G   + PG KN    VC H+L G+C     C +LHQYD  R+P+C F +K    R+ DC +KH T ED  EC  Y+ GFC  GP CRY+H
Sbjct:   53 GSAKVTPGRKNYRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFAKFGECREPDCIYKH-TNEDIKECNMYKLGFCPNGPDCRYRH 141          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|971515100|dbj|GAQ83130.1| (hypothetical protein KFL_001360260 [Klebsormidium nitens])

HSP 1 Score: 141.739 bits (356), Expect = 2.696e-31
Identity = 96/271 (35.42%), Postives = 134/271 (49.45%), Query Frame = 0
Query:  262 YKTTL-----CNHWLSNKGLCPFGDDCVFAHGETELRKHPL--AIAREQQQ----------AHRAG-GGRGETDGREGGLGRKIRF---PDLG---------LPWPDQAR------VRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIYSSSEVSLALGGAEA 496
            +K TL     CN  +   G CP G DC + H +      P+   + R QQ+          A R G  G+ + DG +G   ++++F    D           +P+  +A        R+F+IKS N +NL  S RRG W THRNNE+ LN AF T   V+L YS+NES H+QG A M S + +              H    +   F L WL+L  L F  TR LRNP N+NLP+  +RDCQEL P +G QL+ L+Y+  +  L +   +A
Sbjct:  103 FKHTLEDLKECN--MYKLGFCPNGPDCRYRHQKLPGPPPPVHEVVQRFQQKLYNVHHGEYAARRPGSAGQYDVDG-DGAWQQQMKFRRDEDAASAGDAMMRPMPFATKANPMPPGSTRYFIIKSANRENLELSTRRGAWATHRNNEQRLNAAFDTVANVILIYSINESRHFQGCARMESKVGATNATGQW----KYAHGTAQFGRNFRLRWLKLCELSFTKTRHLRNPYNENLPVKVARDCQELEPSVGEQLVALMYAEPDSELMVFAKKA 366          

HSP 2 Score: 87.0409 bits (214), Expect = 8.078e-14
Identity = 52/132 (39.39%), Postives = 67/132 (50.76%), Query Frame = 0
Query:    8 LDDELAALSFEIEA--------SSNSDGQDGRGDAGLVPRRGGGRSMAPGSKN---VVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKC--VRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKH 126
            +DD    L F+ EA        + + D   G    G VP    GRS     +N    VC H+L G+C     C +LHQ+D  R+P+C F +K    R+  CPFKH T ED  EC  Y+ GFC  GP CRY+H
Sbjct:    1 MDDFDGGLCFDFEAGLDTGRLGTPSDDLYGGGHGLGDVPPEVVGRSHMAARRNYRQTVCRHWLKGLCMKGDSCGFLHQFDPTRMPVCRFFAKHGECREPKCPFKH-TLEDLKECNMYKLGFCPNGPDCRYRH 131          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|302756121|ref|XP_002961484.1| (hypothetical protein SELMODRAFT_77664, partial [Selaginella moellendorffii] >gi|300170143|gb|EFJ36744.1| hypothetical protein SELMODRAFT_77664, partial [Selaginella moellendorffii])

HSP 1 Score: 125.946 bits (315), Expect = 8.176e-30
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 0
Query:  343 RFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTS-PIRSQQQPPHLPPLQMLQHHQDG---WTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQEL 469
            R+F+IKSLN++NL++SV RGVW T   NE  LNEAF+T ++VVL +SVN SGH+QG A MTS P R +          +     DG   W   FS++WL+L  LPF  T  L+NPL+DN P+  S+DCQ L
Sbjct:    1 RYFIIKSLNHQNLSKSVERGVWATPAVNEDILNEAFQTSERVVLVFSVNMSGHFQGYAEMTSRPGRRKD--------NLWNDANDGSSPWGGVFSVDWLKLHDLPFQETSHLKNPLDDNKPVKISKDCQVL 123          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|586706753|ref|XP_006846022.1| (30-kDa cleavage and polyadenylation specificity factor 30 [Amborella trichopoda] >gi|548848778|gb|ERN07697.1| hypothetical protein AMTR_s00155p00079840 [Amborella trichopoda])

HSP 1 Score: 136.732 bits (343), Expect = 1.924e-29
Identity = 75/177 (42.37%), Postives = 101/177 (57.06%), Query Frame = 0
Query:  339 QARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY---SSSEVSLALGG--------AEASLPGGGFG 504
            Q + R+F++KS N +NL  SV++G+W T R+NE  LNEAF + + VVL +S+N + H+QG A MTS I                H    +   FSL+WL+L  L F  TR LRNP N+NLP+  SRDCQEL P IG QL  L+Y    S  +++A+          A+   PGGG G
Sbjct:  252 QGQSRYFIVKSCNRENLELSVQKGIWATQRSNESKLNEAFDSSENVVLIFSINRTRHFQGCAKMTSKIGGYVGGGGW----KYAHGTAHYGRNFSLKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAIAVAAKSKREEERAKGVSPGGGDG 424          

HSP 2 Score: 81.2629 bits (199), Expect = 5.645e-12
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   51 KNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGS---KCVRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKHV 127
            +  VC H+L  +C     C +LHQYD  R+P+C F     +C R+ DC +KH T ED  EC  Y+ GFC  GP CRY+H 
Sbjct:   62 RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGEC-REQDCVYKH-TNEDIKECNMYKLGFCPNGPDCRYRHA 139          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|848927674|ref|XP_012827555.1| (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X2 [Erythranthe guttata])

HSP 1 Score: 134.035 bits (336), Expect = 4.070e-29
Identity = 74/161 (45.96%), Postives = 98/161 (60.87%), Query Frame = 0
Query:  339 QARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY---SSSEVSLALGGAEA 496
            Q   R+FV+KS N +NL  SV++GVW T R+NE  LNEAF + D ++L +SVN++ H+QG A MTS I       +        H    +   FS++WL+L  L F  TR LRNP N+NLP+  SRDCQEL P IG QL  L+Y    S  +++AL  AEA
Sbjct:  120 QGTSRYFVVKSCNNENLELSVQQGVWATQRSNEAKLNEAFESVDNIILIFSVNKTRHFQGCAKMTSRIGGSISGGNWKNAHGTAH----YGQNFSVKWLKLGELSFNKTRHLRNPFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAVAL-AAEA 275          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|1149791227|ref|XP_020157107.1| (zinc finger CCCH domain-containing protein 45 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 135.191 bits (339), Expect = 4.807e-29
Identity = 75/168 (44.64%), Postives = 98/168 (58.33%), Query Frame = 0
Query:  332 LGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY--SSSEVSLALGGAEAS 497
            L  P P Q   R+F++KS N +NL  SV++G+W T R+NE  LNEAF + D V+L +S+N + ++QG A MTS I       +        H    +   FSL+WL+L  L F  T  LRNP NDNLP+  SRDCQEL P IG QL  L+Y    SE++  L  AEA 
Sbjct:  243 LATPLP-QGSSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESMDNVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSANGTAH----YGRNFSLQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAMLVAAEAK 405          

HSP 2 Score: 81.6481 bits (200), Expect = 3.371e-12
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 0
Query:   51 KNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKC--VRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKHV 127
            +  VC H+L G+C   + C +LHQ+D  R+P+C F       R+ DC +KH + +D  EC  Y+ GFC  GP CRYKHV
Sbjct:   56 RQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDYGECREPDCAYKH-SYDDVKECNMYKMGFCPNGPNCRYKHV 133          
BLAST of EWM27410.1 vs. NCBI_GenBank
Match: gi|802620603|ref|XP_012075636.1| (30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas] >gi|643726134|gb|KDP34942.1| hypothetical protein JCGZ_09230 [Jatropha curcas])

HSP 1 Score: 135.191 bits (339), Expect = 7.233e-29
Identity = 75/175 (42.86%), Postives = 103/175 (58.86%), Query Frame = 0
Query:  324 GRKIRFPDLGLPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESGHWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY--SSSEVSLALGGAEA 496
            G+ I+   + +P P Q   R+F++KS N +NL  SV++GVW T R+NE  LNEAF + + V+L +SVN + H+QG A MTS I +     +        H    +   FS++WL+L  L F  TR LRNP N+NLP+  SRDCQEL P +G QL  L+Y    SE+      AEA
Sbjct:  266 GQPIQASRIAMPLP-QGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGASVGGGNW----KYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAVSVAAEA 435          

HSP 2 Score: 80.1073 bits (196), Expect = 1.123e-11
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   51 KNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGS---KCVRDDDCPFKHVTEEDKTECVFYRQGFCMYGPFCRYKHV 127
            +  VC H+L  +C     C +LHQYD  R+P+C F     +C R+ DC +KH T ED  EC  Y+ GFC  GP CRY+H 
Sbjct:   69 RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGEC-REQDCVYKH-TNEDIKECNMYKLGFCPNGPDCRYRHA 146          
The following BLAST results are available for this feature:
BLAST of EWM27410.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109643|gb|EWM27410.1|0.000e+0100.00Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
gi|553183787|ref|XP_005853967.1|0.000e+098.82hypothetical protein NGA_0456100 [Nannochloropsis ... [more]
gi|1070921286|gb|OEL17956.1|2.529e-3237.87Zinc finger CCCH domain-containing protein 45 [Dic... [more]
gi|1026770429|gb|OAE30243.1|9.347e-3245.34hypothetical protein AXG93_4295s2010 [Marchantia p... [more]
gi|971515100|dbj|GAQ83130.1|2.696e-3135.42hypothetical protein KFL_001360260 [Klebsormidium ... [more]
gi|302756121|ref|XP_002961484.1|8.176e-3049.62hypothetical protein SELMODRAFT_77664, partial [Se... [more]
gi|586706753|ref|XP_006846022.1|1.924e-2942.3730-kDa cleavage and polyadenylation specificity fa... [more]
gi|848927674|ref|XP_012827555.1|4.070e-2945.96PREDICTED: 30-kDa cleavage and polyadenylation spe... [more]
gi|1149791227|ref|XP_020157107.1|4.807e-2944.64zinc finger CCCH domain-containing protein 45 [Aeg... [more]
gi|802620603|ref|XP_012075636.1|7.233e-2942.8630-kDa cleavage and polyadenylation specificity fa... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3270rna3270Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications