EWM27407.1, cds3260 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|585109640|gb|EWM27407.1| (cdc48 vcp like aaa [Nannochloropsis gaditana]) HSP 1 Score: 1254.58 bits (3245), Expect = 0.000e+0 Identity = 644/644 (100.00%), Postives = 644/644 (100.00%), Query Frame = 0
Query: 1 MNKDYEDREINTQRKWRLYICSRGCPYVSNLGPVLLISRCASSMSSISPPVEHGEQVCIYPSLSDEFIEISLLARIEVIGFADPEADGDEKSGKVTRGGWWPYCRCPRADADNGPSLLLPLALLVASTSFRPSVLSPDARVESPIEDEWRRKKVLDMAMQLSALGSVEARILPVEAARMSPGLPRAGSLPQEFPLAASIALTPYDRSQESRPCPSTPPSSVPAFSSASSLISADSFSSSPPFPASPLSTATLPLLRILLSRALVPGPIRIPKSSLLSSSSSSPSSLPSSFLLLRLSDYPSWPSPPYSPFALFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPSVLVVGATNRPYEVHPSLRRPGRFDLEVGGEGRRLRGGLSWHGLDPQGEEYSGEQGGEEGMGTTPGLLIASFLPPAPSPLPSSPLMPCPLLAPRCSSHGG 644
MNKDYEDREINTQRKWRLYICSRGCPYVSNLGPVLLISRCASSMSSISPPVEHGEQVCIYPSLSDEFIEISLLARIEVIGFADPEADGDEKSGKVTRGGWWPYCRCPRADADNGPSLLLPLALLVASTSFRPSVLSPDARVESPIEDEWRRKKVLDMAMQLSALGSVEARILPVEAARMSPGLPRAGSLPQEFPLAASIALTPYDRSQESRPCPSTPPSSVPAFSSASSLISADSFSSSPPFPASPLSTATLPLLRILLSRALVPGPIRIPKSSLLSSSSSSPSSLPSSFLLLRLSDYPSWPSPPYSPFALFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPSVLVVGATNRPYEVHPSLRRPGRFDLEVGGEGRRLRGGLSWHGLDPQGEEYSGEQGGEEGMGTTPGLLIASFLPPAPSPLPSSPLMPCPLLAPRCSSHGG
Sbjct: 1 MNKDYEDREINTQRKWRLYICSRGCPYVSNLGPVLLISRCASSMSSISPPVEHGEQVCIYPSLSDEFIEISLLARIEVIGFADPEADGDEKSGKVTRGGWWPYCRCPRADADNGPSLLLPLALLVASTSFRPSVLSPDARVESPIEDEWRRKKVLDMAMQLSALGSVEARILPVEAARMSPGLPRAGSLPQEFPLAASIALTPYDRSQESRPCPSTPPSSVPAFSSASSLISADSFSSSPPFPASPLSTATLPLLRILLSRALVPGPIRIPKSSLLSSSSSSPSSLPSSFLLLRLSDYPSWPSPPYSPFALFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPSVLVVGATNRPYEVHPSLRRPGRFDLEVGGEGRRLRGGLSWHGLDPQGEEYSGEQGGEEGMGTTPGLLIASFLPPAPSPLPSSPLMPCPLLAPRCSSHGG 644
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|669143212|ref|XP_008607168.1| (hypothetical protein SDRG_03315 [Saprolegnia diclina VS20] >gi|530740865|gb|EQC39107.1| hypothetical protein SDRG_03315 [Saprolegnia diclina VS20]) HSP 1 Score: 103.99 bits (258), Expect = 2.127e-19 Identity = 94/298 (31.54%), Postives = 135/298 (45.30%), Query Frame = 0
Query: 291 LLLRLSDYPSWPSPPYSPFA---------LFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEV-SRVAAQLGSCLDSL-----PPSVLVVGATNRPYEVHPSLRRPGRFDLEVG 573
L+++ S P P Y P+A F + R P+ P +R+ +AT + P + + P+P+SS STS L K + +++ R A + P+ LP +LLSGPPGVGKT VR A Q G+ + +++++G E G G E LRA+F AE + R + +FLDE++ALCP A D+ A SR+ AQL + +D + P VLV GATN P + P+LRRPGRFD EV
Sbjct: 132 LIVQESAVVYLPLPSYGPYADADALAKHLKFRVTRTAPANGP-VRIVRATRVNLFRAQTSPASDGMTVDAPLPAPTSS---------------STSIGGLDKEL-AMIEELIRLAVDHNDLPARLGVALPKGVLLSGPPGVGKTLLVRTATRNLQ----------------GECHLQLHVINGAEILSRGVGE--AEATLRAIF--AEGRAFTATSQRH----VFCLFLDELDALCP--ARDTSARAHSRIVAQLLTLMDGIDAKDTAPRVLVFGATNLPNAIDPALRRPGRFDREVA 386
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|813102964|ref|XP_012193984.1| (hypothetical protein SPRG_00500 [Saprolegnia parasitica CBS 223.65] >gi|641541965|gb|KDO35710.1| hypothetical protein SPRG_00500 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 102.064 bits (253), Expect = 8.156e-19 Identity = 95/298 (31.88%), Postives = 137/298 (45.97%), Query Frame = 0
Query: 291 LLLRLSDYPSWPSPPYSPFA---------LFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEV-SRVAAQLGSCLDSL-----PPSVLVVGATNRPYEVHPSLRRPGRFDLEVG 573
L+++ S P P Y P+A F + R P+ P +R+ +AT + A + S ++S+ H+P P STS L K + +++ R A + P+ LP +LLSGPPGVGKT VR A Q G+ + +++++G E G G E LRA+F AE + R + +FLDE++ALCP A D+ A SR+ AQL + +D + P VLV GATN P + P+LRRPGRFD EV
Sbjct: 132 LIVQESAVVYLPLPSYGPYADADALSKNLKFRVTRTAPANGP-VRIVRATRVNLF-----------RAQASATSDATSV-HAPLRAPTSS---STSIGGLDKEL-AMVEELIRLAVDHNDLPARLGVALPKGVLLSGPPGVGKTLLVRTATRKLQ----------------GECHLQLHVINGAEILSRGVGE--AEATLRAIF--AEGRAFTATSQRH----VFCLFLDELDALCP--ARDTSARAHSRIVAQLLTLMDGIDAKDTAPRVLVFGATNLPNAIDPALRRPGRFDREVA 386
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|586447504|ref|XP_006831935.1| (PREDICTED: spermatogenesis-associated protein 5-like protein 1 [Chrysochloris asiatica]) HSP 1 Score: 96.2857 bits (238), Expect = 4.784e-17 Identity = 94/256 (36.72%), Postives = 120/256 (46.88%), Query Frame = 0
Query: 332 HLYCLPPPPPPPCPPPSAPSQEPSPSSS---LPHSP---------SNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACR-SSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
H+ PP P P S PSP S+ PH+ P P+VPL S S+ ELL R+ C ++L ++P +LL+GPPGVGKT VR E G E P QG GE E +R +F+RA++ L+ RG SL+FLDEV+ALCP GA SRV AQ+ + LD + V+VVGATNRP + P+LRRPGRFD EV
Sbjct: 148 HVVAAPPGAPGPVAALHIVSGTPSPDSAGLVTPHTRIVLSGTSPLEAEPRPEVPLG-GLSEAADSLRELLYLPLRYPCALAALGLAVP-----RGVLLAGPPGVGKTQLVRAVAR------EVGAELLAVSAPALQGS------RPGETEEN----------VRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRGGPHGAPESRVVAQVLTLLDGISGDREVVVVGATNRPDALDPALRRPGRFDREV 366
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|940727029|ref|XP_014308985.1| (PREDICTED: LOW QUALITY PROTEIN: spermatogenesis-associated protein 5-like protein 1 [Myotis lucifugus]) HSP 1 Score: 92.8189 bits (229), Expect = 7.050e-16 Identity = 92/257 (35.80%), Postives = 120/257 (46.69%), Query Frame = 0
Query: 332 HLYCLPPPPPPPCPPPSAPSQEPSPSSS---LPHS--------PSNT-PAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLL--PHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
H+ PP P P S P+P + PH+ PS T P P+VPL + S S+ ELL R+ P +L L P +LL+GPPGVGKT VR RE G + L++ A +G E +R +F+RA+ L+ RG +L+FLDEV+ALCP A SRV AQ+ + LD V+VVGATNRP + P+LRRPGRFD EV
Sbjct: 148 HVVAAPPGIPGPVAALHIVSGXPAPDPAGWVTPHTLISLSGAPPSQTXPQPEVPLG-ALSEAADSLRELLHLPLRY------PRTLAALGLSVPRGVLLAGPPGVGKTQLVRAV----------ARETGAE------------LLAVSAPALQGARPGETEENVRRVFQRAQG--LAARGP-------TLLFLDEVDALCPRRGDAHQAPESRVVAQVLTLLDGFSGDREVVVVGATNRPDALDPALRRPGRFDREV 366
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|826308490|ref|XP_012504983.1| (PREDICTED: spermatogenesis-associated protein 5-like protein 1 [Propithecus coquereli]) HSP 1 Score: 90.8929 bits (224), Expect = 2.464e-15 Identity = 83/215 (38.60%), Postives = 107/215 (49.77%), Query Frame = 0
Query: 364 PSNTP-APDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSL---LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
PS TP P+VPL S S+ ELL R+ P +L +P +LL+GPPGVGKT VR RE G K L++ A +G E +R +F+RA++ L+ RG SL+FLDEV+ALCP A SRV AQ+ + LD + V+VVGATNRP + P+LRRPGRFD EV
Sbjct: 188 PSETPPLPEVPLG-GLSEAADSLRELLCLPLRY-------PRALATLGLAVPRGVLLAGPPGVGKTQLVRAV----------AREAGAK------------LLAVSASALQGTRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRGGPHRAPESRVVAQVLTLLDGISGDREVVVVGATNRPDALDPALRRPGRFDREV 363
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1048486570|ref|XP_017521003.1| (PREDICTED: spermatogenesis-associated protein 5-like protein 1 [Manis javanica]) HSP 1 Score: 90.1225 bits (222), Expect = 4.138e-15 Identity = 89/247 (36.03%), Postives = 117/247 (47.37%), Query Frame = 0
Query: 330 ATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLL--PHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
A H+ C P P P S S +P S + P P+VPL S S+ ELL R+ P +L L P +LL+GPPGVGKT VR V RE G + L++ A +G E +R +F+RA++ + G R +L+FLDEV+ALCP A SRV AQ+ + LD + V+VVGATNRP + P+LRRPGRFD EV
Sbjct: 162 ALHIVCGAPSPDPAGLVTSCTH---IGLSGVPLSEAK-PQPEVPLG-GLSEAADSLRELLHLPLRY------PRALAALGLAVPRGVLLAGPPGVGKTQLVRAVV----------REAGAE------------LLAVSAPALQGARPGETEENVRRVFQRAQE----LAGRRP-----TLLFLDEVDALCPRRGGPHRAPESRVVAQVLTLLDGISGDREVVVVGATNRPEALDPALRRPGRFDREV 366
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1211428663|ref|XP_021500747.1| (spermatogenesis-associated protein 5-like protein 1 isoform X3 [Meriones unguiculatus]) HSP 1 Score: 89.7373 bits (221), Expect = 5.093e-15 Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 0
Query: 410 LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPS--VLVVGATNRPYEVHPSLRRPGRFDLEV 572
+P +LL+GPPGVGKT VR AV+ RE G + L++ A +G E +R +F+RA++ L+ RG SL+FLDEV+ALCP A+ A RV AQ+ + LD + V+VVGATNRP E+ P+LRRPGRFD EV
Sbjct: 229 VPRGVLLAGPPGVGKTQLVR-AVA---------REAGAE------------LLAVSAPALQGSRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRATSQRAPEGRVVAQVLTLLDGIHSDREVVVVGATNRPDELDPALRRPGRFDREV 362
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1211428659|ref|XP_021500745.1| (spermatogenesis-associated protein 5-like protein 1 isoform X1 [Meriones unguiculatus]) HSP 1 Score: 89.7373 bits (221), Expect = 5.156e-15 Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 0
Query: 410 LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPS--VLVVGATNRPYEVHPSLRRPGRFDLEV 572
+P +LL+GPPGVGKT VR AV+ RE G + L++ A +G E +R +F+RA++ L+ RG SL+FLDEV+ALCP A+ A RV AQ+ + LD + V+VVGATNRP E+ P+LRRPGRFD EV
Sbjct: 229 VPRGVLLAGPPGVGKTQLVR-AVA---------REAGAE------------LLAVSAPALQGSRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRATSQRAPEGRVVAQVLTLLDGIHSDREVVVVGATNRPDELDPALRRPGRFDREV 362
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1211428661|ref|XP_021500746.1| (spermatogenesis-associated protein 5-like protein 1 isoform X2 [Meriones unguiculatus]) HSP 1 Score: 89.3521 bits (220), Expect = 6.450e-15 Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 0
Query: 410 LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPS--VLVVGATNRPYEVHPSLRRPGRFDLEV 572
+P +LL+GPPGVGKT VR AV+ RE G + L++ A +G E +R +F+RA++ L+ RG SL+FLDEV+ALCP A+ A RV AQ+ + LD + V+VVGATNRP E+ P+LRRPGRFD EV
Sbjct: 229 VPRGVLLAGPPGVGKTQLVR-AVA---------REAGAE------------LLAVSAPALQGSRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRATSQRAPEGRVVAQVLTLLDGIHSDREVVVVGATNRPDELDPALRRPGRFDREV 362 The following BLAST results are available for this feature:
BLAST of EWM27407.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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