EWM27407.1, cds3260 (CDS) Nannochloropsis gaditana

Overview
NameEWM27407.1
Unique Namecds3260
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1184469..1185010 -
Alignment locationCM002460.1:1183373..1184333 -
Alignment locationCM002460.1:1183152..1183229 -
Alignment locationCM002460.1:1182566..1182919 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27407.1
Productcdc48 vcp like aaa
Orig transcript idgnl|cribi|Naga_100237g8.1699.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1184469..1185010 -
CM002460.1supercontigCM002460.1:1183373..1184333 -
CM002460.1supercontigCM002460.1:1183152..1183229 -
CM002460.1supercontigCM002460.1:1182566..1182919 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
IPR003593AAA+_ATPase
Homology
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|585109640|gb|EWM27407.1| (cdc48 vcp like aaa [Nannochloropsis gaditana])

HSP 1 Score: 1254.58 bits (3245), Expect = 0.000e+0
Identity = 644/644 (100.00%), Postives = 644/644 (100.00%), Query Frame = 0
Query:    1 MNKDYEDREINTQRKWRLYICSRGCPYVSNLGPVLLISRCASSMSSISPPVEHGEQVCIYPSLSDEFIEISLLARIEVIGFADPEADGDEKSGKVTRGGWWPYCRCPRADADNGPSLLLPLALLVASTSFRPSVLSPDARVESPIEDEWRRKKVLDMAMQLSALGSVEARILPVEAARMSPGLPRAGSLPQEFPLAASIALTPYDRSQESRPCPSTPPSSVPAFSSASSLISADSFSSSPPFPASPLSTATLPLLRILLSRALVPGPIRIPKSSLLSSSSSSPSSLPSSFLLLRLSDYPSWPSPPYSPFALFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPSVLVVGATNRPYEVHPSLRRPGRFDLEVGGEGRRLRGGLSWHGLDPQGEEYSGEQGGEEGMGTTPGLLIASFLPPAPSPLPSSPLMPCPLLAPRCSSHGG 644
            MNKDYEDREINTQRKWRLYICSRGCPYVSNLGPVLLISRCASSMSSISPPVEHGEQVCIYPSLSDEFIEISLLARIEVIGFADPEADGDEKSGKVTRGGWWPYCRCPRADADNGPSLLLPLALLVASTSFRPSVLSPDARVESPIEDEWRRKKVLDMAMQLSALGSVEARILPVEAARMSPGLPRAGSLPQEFPLAASIALTPYDRSQESRPCPSTPPSSVPAFSSASSLISADSFSSSPPFPASPLSTATLPLLRILLSRALVPGPIRIPKSSLLSSSSSSPSSLPSSFLLLRLSDYPSWPSPPYSPFALFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPSVLVVGATNRPYEVHPSLRRPGRFDLEVGGEGRRLRGGLSWHGLDPQGEEYSGEQGGEEGMGTTPGLLIASFLPPAPSPLPSSPLMPCPLLAPRCSSHGG
Sbjct:    1 MNKDYEDREINTQRKWRLYICSRGCPYVSNLGPVLLISRCASSMSSISPPVEHGEQVCIYPSLSDEFIEISLLARIEVIGFADPEADGDEKSGKVTRGGWWPYCRCPRADADNGPSLLLPLALLVASTSFRPSVLSPDARVESPIEDEWRRKKVLDMAMQLSALGSVEARILPVEAARMSPGLPRAGSLPQEFPLAASIALTPYDRSQESRPCPSTPPSSVPAFSSASSLISADSFSSSPPFPASPLSTATLPLLRILLSRALVPGPIRIPKSSLLSSSSSSPSSLPSSFLLLRLSDYPSWPSPPYSPFALFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPSVLVVGATNRPYEVHPSLRRPGRFDLEVGGEGRRLRGGLSWHGLDPQGEEYSGEQGGEEGMGTTPGLLIASFLPPAPSPLPSSPLMPCPLLAPRCSSHGG 644          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|669143212|ref|XP_008607168.1| (hypothetical protein SDRG_03315 [Saprolegnia diclina VS20] >gi|530740865|gb|EQC39107.1| hypothetical protein SDRG_03315 [Saprolegnia diclina VS20])

HSP 1 Score: 103.99 bits (258), Expect = 2.127e-19
Identity = 94/298 (31.54%), Postives = 135/298 (45.30%), Query Frame = 0
Query:  291 LLLRLSDYPSWPSPPYSPFA---------LFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEV-SRVAAQLGSCLDSL-----PPSVLVVGATNRPYEVHPSLRRPGRFDLEVG 573
            L+++ S     P P Y P+A          F + R  P+  P +R+ +AT +        P     +  +  P+P+SS               STS   L K +  +++   R A   +  P+     LP  +LLSGPPGVGKT  VR A    Q                G+  + +++++G E    G G    E  LRA+F  AE    +    R     +  +FLDE++ALCP  A D+ A   SR+ AQL + +D +      P VLV GATN P  + P+LRRPGRFD EV 
Sbjct:  132 LIVQESAVVYLPLPSYGPYADADALAKHLKFRVTRTAPANGP-VRIVRATRVNLFRAQTSPASDGMTVDAPLPAPTSS---------------STSIGGLDKEL-AMIEELIRLAVDHNDLPARLGVALPKGVLLSGPPGVGKTLLVRTATRNLQ----------------GECHLQLHVINGAEILSRGVGE--AEATLRAIF--AEGRAFTATSQRH----VFCLFLDELDALCP--ARDTSARAHSRIVAQLLTLMDGIDAKDTAPRVLVFGATNLPNAIDPALRRPGRFDREVA 386          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|813102964|ref|XP_012193984.1| (hypothetical protein SPRG_00500 [Saprolegnia parasitica CBS 223.65] >gi|641541965|gb|KDO35710.1| hypothetical protein SPRG_00500 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.064 bits (253), Expect = 8.156e-19
Identity = 95/298 (31.88%), Postives = 137/298 (45.97%), Query Frame = 0
Query:  291 LLLRLSDYPSWPSPPYSPFA---------LFTIARLTPSQYPYLRVGKATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEV-SRVAAQLGSCLDSL-----PPSVLVVGATNRPYEVHPSLRRPGRFDLEVG 573
            L+++ S     P P Y P+A          F + R  P+  P +R+ +AT +               A +   S ++S+ H+P   P      STS   L K +  +++   R A   +  P+     LP  +LLSGPPGVGKT  VR A    Q                G+  + +++++G E    G G    E  LRA+F  AE    +    R     +  +FLDE++ALCP  A D+ A   SR+ AQL + +D +      P VLV GATN P  + P+LRRPGRFD EV 
Sbjct:  132 LIVQESAVVYLPLPSYGPYADADALSKNLKFRVTRTAPANGP-VRIVRATRVNLF-----------RAQASATSDATSV-HAPLRAPTSS---STSIGGLDKEL-AMVEELIRLAVDHNDLPARLGVALPKGVLLSGPPGVGKTLLVRTATRKLQ----------------GECHLQLHVINGAEILSRGVGE--AEATLRAIF--AEGRAFTATSQRH----VFCLFLDELDALCP--ARDTSARAHSRIVAQLLTLMDGIDAKDTAPRVLVFGATNLPNAIDPALRRPGRFDREVA 386          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|586447504|ref|XP_006831935.1| (PREDICTED: spermatogenesis-associated protein 5-like protein 1 [Chrysochloris asiatica])

HSP 1 Score: 96.2857 bits (238), Expect = 4.784e-17
Identity = 94/256 (36.72%), Postives = 120/256 (46.88%), Query Frame = 0
Query:  332 HLYCLPPPPPPPCPPPSAPSQEPSPSSS---LPHSP---------SNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACR-SSLPPSLPPSLLPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
            H+   PP  P P       S  PSP S+    PH+             P P+VPL    S    S+ ELL    R+ C  ++L  ++P       +LL+GPPGVGKT  VR          E G E      P  QG         GE  E           +R +F+RA++  L+ RG        SL+FLDEV+ALCP      GA  SRV AQ+ + LD +     V+VVGATNRP  + P+LRRPGRFD EV
Sbjct:  148 HVVAAPPGAPGPVAALHIVSGTPSPDSAGLVTPHTRIVLSGTSPLEAEPRPEVPLG-GLSEAADSLRELLYLPLRYPCALAALGLAVP-----RGVLLAGPPGVGKTQLVRAVAR------EVGAELLAVSAPALQGS------RPGETEEN----------VRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRGGPHGAPESRVVAQVLTLLDGISGDREVVVVGATNRPDALDPALRRPGRFDREV 366          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|940727029|ref|XP_014308985.1| (PREDICTED: LOW QUALITY PROTEIN: spermatogenesis-associated protein 5-like protein 1 [Myotis lucifugus])

HSP 1 Score: 92.8189 bits (229), Expect = 7.050e-16
Identity = 92/257 (35.80%), Postives = 120/257 (46.69%), Query Frame = 0
Query:  332 HLYCLPPPPPPPCPPPSAPSQEPSPSSS---LPHS--------PSNT-PAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLL--PHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
            H+   PP  P P       S  P+P  +    PH+        PS T P P+VPL  + S    S+ ELL    R+      P +L    L  P  +LL+GPPGVGKT  VR             RE G +            L++    A +G      E  +R +F+RA+   L+ RG        +L+FLDEV+ALCP       A  SRV AQ+ + LD       V+VVGATNRP  + P+LRRPGRFD EV
Sbjct:  148 HVVAAPPGIPGPVAALHIVSGXPAPDPAGWVTPHTLISLSGAPPSQTXPQPEVPLG-ALSEAADSLRELLHLPLRY------PRTLAALGLSVPRGVLLAGPPGVGKTQLVRAV----------ARETGAE------------LLAVSAPALQGARPGETEENVRRVFQRAQG--LAARGP-------TLLFLDEVDALCPRRGDAHQAPESRVVAQVLTLLDGFSGDREVVVVGATNRPDALDPALRRPGRFDREV 366          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|826308490|ref|XP_012504983.1| (PREDICTED: spermatogenesis-associated protein 5-like protein 1 [Propithecus coquereli])

HSP 1 Score: 90.8929 bits (224), Expect = 2.464e-15
Identity = 83/215 (38.60%), Postives = 107/215 (49.77%), Query Frame = 0
Query:  364 PSNTP-APDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSL---LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
            PS TP  P+VPL    S    S+ ELL    R+       P    +L   +P  +LL+GPPGVGKT  VR             RE G K            L++    A +G      E  +R +F+RA++  L+ RG        SL+FLDEV+ALCP       A  SRV AQ+ + LD +     V+VVGATNRP  + P+LRRPGRFD EV
Sbjct:  188 PSETPPLPEVPLG-GLSEAADSLRELLCLPLRY-------PRALATLGLAVPRGVLLAGPPGVGKTQLVRAV----------AREAGAK------------LLAVSASALQGTRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRGGPHRAPESRVVAQVLTLLDGISGDREVVVVGATNRPDALDPALRRPGRFDREV 363          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1048486570|ref|XP_017521003.1| (PREDICTED: spermatogenesis-associated protein 5-like protein 1 [Manis javanica])

HSP 1 Score: 90.1225 bits (222), Expect = 4.138e-15
Identity = 89/247 (36.03%), Postives = 117/247 (47.37%), Query Frame = 0
Query:  330 ATHLYCLPPPPPPPCPPPSAPSQEPSPSSSLPHSPSNTPAPDVPLSTSYSTLVKSIHELLQAHFRFACRSSLPPSLPPSLL--PHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSL--PPSVLVVGATNRPYEVHPSLRRPGRFDLEV 572
            A H+ C  P P P     S         S +P S +  P P+VPL    S    S+ ELL    R+      P +L    L  P  +LL+GPPGVGKT  VR  V          RE G +            L++    A +G      E  +R +F+RA++    + G R      +L+FLDEV+ALCP       A  SRV AQ+ + LD +     V+VVGATNRP  + P+LRRPGRFD EV
Sbjct:  162 ALHIVCGAPSPDPAGLVTSCTH---IGLSGVPLSEAK-PQPEVPLG-GLSEAADSLRELLHLPLRY------PRALAALGLAVPRGVLLAGPPGVGKTQLVRAVV----------REAGAE------------LLAVSAPALQGARPGETEENVRRVFQRAQE----LAGRRP-----TLLFLDEVDALCPRRGGPHRAPESRVVAQVLTLLDGISGDREVVVVGATNRPEALDPALRRPGRFDREV 366          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1211428663|ref|XP_021500747.1| (spermatogenesis-associated protein 5-like protein 1 isoform X3 [Meriones unguiculatus])

HSP 1 Score: 89.7373 bits (221), Expect = 5.093e-15
Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 0
Query:  410 LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPS--VLVVGATNRPYEVHPSLRRPGRFDLEV 572
            +P  +LL+GPPGVGKT  VR AV+         RE G +            L++    A +G      E  +R +F+RA++  L+ RG        SL+FLDEV+ALCP  A+   A   RV AQ+ + LD +     V+VVGATNRP E+ P+LRRPGRFD EV
Sbjct:  229 VPRGVLLAGPPGVGKTQLVR-AVA---------REAGAE------------LLAVSAPALQGSRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRATSQRAPEGRVVAQVLTLLDGIHSDREVVVVGATNRPDELDPALRRPGRFDREV 362          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1211428659|ref|XP_021500745.1| (spermatogenesis-associated protein 5-like protein 1 isoform X1 [Meriones unguiculatus])

HSP 1 Score: 89.7373 bits (221), Expect = 5.156e-15
Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 0
Query:  410 LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPS--VLVVGATNRPYEVHPSLRRPGRFDLEV 572
            +P  +LL+GPPGVGKT  VR AV+         RE G +            L++    A +G      E  +R +F+RA++  L+ RG        SL+FLDEV+ALCP  A+   A   RV AQ+ + LD +     V+VVGATNRP E+ P+LRRPGRFD EV
Sbjct:  229 VPRGVLLAGPPGVGKTQLVR-AVA---------REAGAE------------LLAVSAPALQGSRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRATSQRAPEGRVVAQVLTLLDGIHSDREVVVVGATNRPDELDPALRRPGRFDREV 362          
BLAST of EWM27407.1 vs. NCBI_GenBank
Match: gi|1211428661|ref|XP_021500746.1| (spermatogenesis-associated protein 5-like protein 1 isoform X2 [Meriones unguiculatus])

HSP 1 Score: 89.3521 bits (220), Expect = 6.450e-15
Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 0
Query:  410 LPHALLLSGPPGVGKTYAVRRAVSLFQDGGEEGREGGGKEGPGGQGKVHVYLVSGGEFAEEGGGADGLEGRLRALFRRAEDATLSIRGDRGESAALSLIFLDEVEALCPPSASDSGAEVSRVAAQLGSCLDSLPPS--VLVVGATNRPYEVHPSLRRPGRFDLEV 572
            +P  +LL+GPPGVGKT  VR AV+         RE G +            L++    A +G      E  +R +F+RA++  L+ RG        SL+FLDEV+ALCP  A+   A   RV AQ+ + LD +     V+VVGATNRP E+ P+LRRPGRFD EV
Sbjct:  229 VPRGVLLAGPPGVGKTQLVR-AVA---------REAGAE------------LLAVSAPALQGSRPGETEENVRRVFQRAQE--LASRGP-------SLLFLDEVDALCPRRATSQRAPEGRVVAQVLTLLDGIHSDREVVVVGATNRPDELDPALRRPGRFDREV 362          
The following BLAST results are available for this feature:
BLAST of EWM27407.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109640|gb|EWM27407.1|0.000e+0100.00cdc48 vcp like aaa [Nannochloropsis gaditana][more]
gi|669143212|ref|XP_008607168.1|2.127e-1931.54hypothetical protein SDRG_03315 [Saprolegnia dicli... [more]
gi|813102964|ref|XP_012193984.1|8.156e-1931.88hypothetical protein SPRG_00500 [Saprolegnia paras... [more]
gi|586447504|ref|XP_006831935.1|4.784e-1736.72PREDICTED: spermatogenesis-associated protein 5-li... [more]
gi|940727029|ref|XP_014308985.1|7.050e-1635.80PREDICTED: LOW QUALITY PROTEIN: spermatogenesis-as... [more]
gi|826308490|ref|XP_012504983.1|2.464e-1538.60PREDICTED: spermatogenesis-associated protein 5-li... [more]
gi|1048486570|ref|XP_017521003.1|4.138e-1536.03PREDICTED: spermatogenesis-associated protein 5-li... [more]
gi|1211428663|ref|XP_021500747.1|5.093e-1541.82spermatogenesis-associated protein 5-like protein ... [more]
gi|1211428659|ref|XP_021500745.1|5.156e-1541.82spermatogenesis-associated protein 5-like protein ... [more]
gi|1211428661|ref|XP_021500746.1|6.450e-1541.82spermatogenesis-associated protein 5-like protein ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3269rna3269Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications