EWM27447.1, cds3224 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|585109702|gb|EWM27447.1| (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 881.708 bits (2277), Expect = 0.000e+0 Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0 Query: 1 MDCSRSLQERISFVNQHQPWPDPEKEGRDGSYRGYTMEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVDKEYRDSGGESRKQVDYQGEE 423 MDCSRSLQERISFVNQHQPWPDPEKEGRDGSYRGYTMEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVDKEYRDSGGESRKQVDYQGEE Sbjct: 1 MDCSRSLQERISFVNQHQPWPDPEKEGRDGSYRGYTMEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVDKEYRDSGGESRKQVDYQGEE 423
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|585109712|gb|EWM27457.1| (hypothetical protein Naga_100107g9 [Nannochloropsis gaditana]) HSP 1 Score: 252.677 bits (644), Expect = 2.042e-80 Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 Query: 286 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVDKE 405 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESV++E Sbjct: 4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEE 123
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|298710606|emb|CBJ32035.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 160.229 bits (404), Expect = 1.068e-40 Identity = 102/324 (31.48%), Postives = 168/324 (51.85%), Query Frame = 0 Query: 61 VQLLDADTRLFLADDLLQKIEAFTRTG--TGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDAS-EEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEV-----PPVPAFEINKDCASAQAW 376 VQL RL +A LL ++ + +G G Q H + E +E+R+R C+ + D QS DW +A T GI TF + D D +L + HG ++D V+ QLAV+RE D ++ W+P D SK++KRLG +E +++F ++ G+ RD VLH YGCD+ E I++ G S+ E + P K W HAR+D++ F ++ +LSPT + ++ +D K VPQ V+N+ + + G ++ L Q + ++ D +++ + FY +L P +GW V PA +++ + +AW Sbjct: 24 VQLCREQARLLVAGRLLAAVDRYLASGQHAGRQEVKEAHALLAGELKPLFDEVRQRAAECQSSLDDWQSPDWLVAQTFMGITTFYKVDP-DGSLWIKMHGTMDDVTVMDQLAVVREVDLFNKWVPFCDTSKLLKRLGIVELLVYFSMSIPGVG--RDCVLHAYGCDSVLETGCILIQGRSVEEVPEGVEV---PQVKGWRHARMDVRAFRAKIEVLSPTSARTSIVANVDPKAP-VPQSVVNFVVRKMAGMFLYCLKQTAKCIRADEGNCHRRRIVEDKAFYKGWLFPRFERFYRRQGWTVDEELGGGEPASKLSDEPTGGRAW 340
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|1210530172|dbj|GAX11088.1| (hypothetical protein FisN_9Hh178 [Fistulifera solaris]) HSP 1 Score: 144.821 bits (364), Expect = 8.321e-34 Identity = 87/285 (30.53%), Postives = 141/285 (49.47%), Query Frame = 0 Query: 103 EDSQRLEELRRRVQVCRQAARDMQS-EDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCD-ASEEDLIILSGASI---------PEDEITE------SMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEP-FYANYLVPYCLNLAYTKGWEVPPVPAFEINKD 369 E L +L ++ A +++ + EDW A GI T+ RR+E D +L+ + GE+ P+ Q+AVLR D ++ W+P S ++ +LGK++ + WF + RD GCD SE+ II++G I PED ++ + P K + R+ I+ F + I SPT K ++ L+ I F+ Q +I++ K L G V+ L +++ +PV + AQ MR EP FY +L+ KGWE+P V AF +N++ Sbjct: 102 EKESELHKLENVSRIFYGALKNLNTDEDWTFASLHFGITTYYRREE-DGSLSVKLEGELTGVPLFEQIAVLRAGDLHYKWVPFCSSSMIIAQLGKLDIINWFMIGIPQFGLARDGCYRAIGCDNMSEDGSIIIAGQGINDIMPGDHPPEDPFLSNDPAVFALNIPPAPTKRGNGRMTIRKFETVVNITSPTSAKTRIVANLNPNIAFLSQGIIDFALKHLAGVVLAKLQSAAKKVVKNPVTNHHAQQMREEPDFYQTWLMAKFKAFCDEKGWEMPRVSAFTVNEE 385
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|585107224|gb|EWM25463.1| (START-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 137.502 bits (345), Expect = 1.219e-31 Identity = 97/317 (30.60%), Postives = 157/317 (49.53%), Query Frame = 0 Query: 48 QVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQA-EWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQS-EDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGAS-IPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQT--DPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVP 359 ++ +EN +QLL D RL +A+DL +K+EAF + Q E M S ++L L RR C +AA D+ S E+W LA G TF+R + + GE E + QL V+REA YH W P + S +V +++ M+ F + F RD ++ Y CD SE+D+I++ G S +P D S+G+ W R+ I F Q+++ K+ + +D + +PQ VIN+ + + G +++ L + +RL D + + Q++R +P+Y + +P L KGWE P Sbjct: 74 EITDENASRILAYIQLLTEDDRLMIAEDLRKKLEAFVKEQPLSQVKENIRRQMQESPLQEQLALLSRRGVECLEAAEDLASRENWTLAFRTFGFDTFVR--PVGEQMYVKVEGEQEGTSIFDQLLVVREAAMYHRWGPFVCSSALVHSFKQLDLMVTFEL--NAPLFHRDCLMRGYACDYSEKDMILICGDSVVPAD--YPSLGLSTEPNGWLFKRMSITRFRCQVQLRGVNKGKVIMAALIDPRTA-LPQSVINFCLQRIVGVLLYLLLRTAQRLNQAGDKLGADFLQVIRRDPYYFRHCLPRILWYCQQKGWEYP 383
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|219119910|ref|XP_002180706.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408179|gb|EEC48114.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 128.642 bits (322), Expect = 7.769e-30 Identity = 77/255 (30.20%), Postives = 128/255 (50.20%), Query Frame = 0 Query: 108 LEELRRRVQVCRQAARDMQSED-WELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEED-LIILSGASI---------------PEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRS-EPFYANYLV 344 +++L RV++ R+A ++ +D W A T GI+TF RR+E D +L+ + GEIE P+ Q+ VL+E D ++ W P S V L K++ + WF + RD GCD ED I+L G + ED I +G+ P K+ R+ I+ F + +LSPT K ++ +D + F+PQ ++ + K L G ++ L +++ +PV + A+ MR E FY ++L+ Sbjct: 115 IDKLENRVRIFRKALHNLNEDDEWTYASTHFGIKTFYRREE-DQSLSVKLEGEIEGVPLFEQICVLKEVDLHYKWAPFCSSSMTVADLDKLDTVGWFMIGLPHFGVARDGCFRAIGCDNIIEDGSILLVGQGVHDRPPDAPPPEDPFLSEDPILNDLGIPPVPKRRGSGRMTIRKFESVIHVLSPTSAKTRIVANIDPNMAFLPQSLLEFLMKHLAGVMLAKLQAATKKVLKNPVSNEHARKMREHEDFYKHWLM 368
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|397563876|gb|EJK43974.1| (hypothetical protein THAOC_37531, partial [Thalassiosira oceanica]) HSP 1 Score: 132.109 bits (331), Expect = 1.468e-29 Identity = 92/354 (25.99%), Postives = 147/354 (41.53%), Query Frame = 0 Query: 103 EDSQRLEELRRRVQVCRQAARDMQSED------------WELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEED---LIILSG-----------------------------------------------ASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSE-PFYANYLVPYCLNLAYTKGWEVPPVPAFEINKD--CASAQAWRQEYHELLAKNRLLG 391 E S LRRR + A + D W A T G+ T RR E D +L+ R G++ P+ QLA+LRE D YH W P S+ + +LG+++ W+ V RDA GCD ED +I+ G +S+ DEI ++ + P R+ I+ FS ++ +L PT + ++ +D ++ +PQ +I++ K +CG ++ L RR+ DPV + A+ MR + FY ++L+P KGW +PPV AFE++ + A+ W + A +G Sbjct: 78 EKSDEFALLRRRASLFLAAKETLSQHDKNDGEESDENTGWVHAQTLFGVSTHYRR-ESDGSLSIRIAGDLVGVPLFEQLAILREVDLYHAWAPFCVSSRKLAQLGRLDVAAWYDVGVPIFGLSRDACYRAVGCDGMAEDGSVMIVAVGLNDTDEHGVVSSASLGKQTRKRGPSPPAAASDDDDAEGLEATEGSLLSSLARDEILSTLEMPPVPSGAGRGRMTIRNFSAKVDVLGPTSARTIMVVNVDPNLQLIPQALIDFSMKKMCGILLSRLQASARRVLKDPVGNAHARRMREDVTFYRDWLLPKFRAYCEAKGWNMPPVGAFEVSDEELRATGMGWIDDGQSSTADASFIG 430
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|1072237730|gb|OEU22457.1| (hypothetical protein FRACYDRAFT_179309, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 124.405 bits (311), Expect = 4.596e-28 Identity = 72/270 (26.67%), Postives = 135/270 (50.00%), Query Frame = 0 Query: 103 EDSQRLEELRRRVQVCRQAARDMQ-SEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEED---LIILSGA----------------------SIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMR-SEPFYANYLVP 345 E+ L ++ R ++ +A +++ ++DW A T G+ T+ R+ E D +L+ + G +ED + +Q+AVLRE D + W P + S V L K++ + WF V +RDA GCD+ ED L++ G S+ D I +++ + PP + + R+ I+ S Q+ I S T + ++ +D+ + F+P K++++ K +CG +++ + R++ DP+ + A MR + FY +L+P Sbjct: 131 ENEDILNKMEDRCRLFEKAKKNLDVNDDWTHAQTMFGVTTYYRK-ESDGSLSIKLEGTVEDASLFNQIAVLREIDLTYLWAPFVTSSMTVAHLDKLDTVGWFVVGLPHFGIMRDACFRAIGCDSMYEDGSVLLVAEGIADRPEDLDGDDKRDLNRTRIEDSLRTDPILDTLDLPPPPTRTGNGRMTIRSISAQIHIESATSSTTKIVANIDLNLPFIPPKLLDFIMKRMCGLILYKMQGAARKISRDPITNLHAIKMREDDDFYRRFLLP 399
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|585108997|gb|EWM26881.1| (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 124.405 bits (311), Expect = 4.854e-28 Identity = 89/297 (29.97%), Postives = 130/297 (43.77%), Query Frame = 0 Query: 40 AANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAF---TRTGTG------------------------PQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSED-WELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFV--RDAVLHLYGCDASEEDLIILSGASI-------------------------PEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKID 281 A + Q L + E NVQ A+R +Q L D RL LA L K+ +F T G P + MA + RLE L RRV C +A SE W A G+ T R E D TL R ++E+C V +LAVLREAD Y W P + S +V+ +GK E ++WF+ +P++ RDA +H++ CDA+E +++L G SI P + + + P WN AR++++ Q+ +L P +D Sbjct: 50 AVADVQHLTLTETNVQKAFRNLQCLVCDERLLLAHTLWHKLISFLGVTEAGVAAPETGLSECSKGVFPSPSRISPPTPNTDSVRQAMAHPQTRARLESLDRRVNACVEALDLFASETGWVFAQKYFGVSTHYRM-EDDGTLTVRLRADLEECSVFDELAVLREADLYPLWAPFVRASSLVQEVGKCELVIWFQFL---VPWLASRDACVHIFACDATERGVLLLCGQSIREGEGKGGRGEGRGKEGGAGGMEKVPLFDAIPGLNIPPLASGWNSARMEVRKCWCQIELLGPRACCVD 342
BLAST of EWM27447.1 vs. NCBI_GenBank
Match: gi|325188209|emb|CCA22750.1| (transmembrane protein putative [Albugo laibachii Nc14]) HSP 1 Score: 118.627 bits (296), Expect = 4.658e-25 Identity = 85/267 (31.84%), Postives = 143/267 (53.56%), Query Frame = 0 Query: 46 ALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARS------EDSQRLEELRRRVQVCRQAARDMQSE---DWELAHTEEGIQTFLRRDEGDNTLAW-RTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFV-RDAVLHLYGCDAS-EEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINY 300 + V E+NV+ A+R +Q L + RL + LL+K+E + QA ++H RS ED L +++R V ++A + E +W+ A + G+ T+ + GD+ W + G IE V++ LAV+RE D Y W P S+V+K +G++E + +F V+ LPF+ RDAVLH +G +A E I+L G S P+D I P K WN R+DI+ F ++ + P+ + ++ +D+K +P+ ++N+ Sbjct: 602 GIVVSEDNVEWAWRHIQALRVEERLISVNMLLEKLEKYISQMDKRQA--SLH-SCRSVQTEMEEDKIALTRIKKRNAVAQEALYEFNYEKEAEWQFAQSYLGVSTYWK--PGDSGTIWLKMDGLIEGADVLNTLAVIREIDLYRLWAPFCTISEVLKEVGRVELLAYFSVS---LPFLTRDAVLHAFGVNACYEHRCILLLGQSAPDDMIQV-----PKMKGWNVDRIDIRGFRAKIVPIEPSKAQACIVVNMDIKCA-IPKSLLNF 854 The following BLAST results are available for this feature:
BLAST of EWM27447.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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