EWM27457.1, cds3222 (CDS) Nannochloropsis gaditana

Overview
NameEWM27457.1
Unique Namecds3222
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1062853..1062861 -
Alignment locationCM002460.1:1062612..1062704 -
Alignment locationCM002460.1:1062319..1062432 -
Alignment locationCM002460.1:1061926..1062093 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27457.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100107g9.4511.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1062853..1062861 -
CM002460.1supercontigCM002460.1:1062612..1062704 -
CM002460.1supercontigCM002460.1:1062319..1062432 -
CM002460.1supercontigCM002460.1:1061926..1062093 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|585109712|gb|EWM27457.1| (hypothetical protein Naga_100107g9 [Nannochloropsis gaditana])

HSP 1 Score: 266.159 bits (679), Expect = 2.543e-90
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 MLCLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEEQAGD 127
            MLCLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEEQAGD
Sbjct:    1 MLCLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEEQAGD 127          
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|585109702|gb|EWM27447.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 252.677 bits (644), Expect = 6.131e-81
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEE 123
            LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESV++E
Sbjct:  286 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVDKE 405          
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|223999847|ref|XP_002289596.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974804|gb|EED93133.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.1586 bits (152), Expect = 4.704e-9
Identity = 30/99 (30.30%), Postives = 57/99 (57.58%), Query Frame = 0
Query:    4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSE-PFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASA----QAWRQE 97
            +D  + F+PQ +I++  K +CG ++  L    R++  DP+++P A+ MR +  FY ++L+P         GW +PPV AF+++++   A    + WR +
Sbjct:  484 VDPNLHFIPQSLIDFCMKRMCGVLLSRLQATARKVVKDPIKNPHARRMREDVSFYRDWLLPKFRVYCDESGWSMPPVKAFDVSEEDLKAEGIFEGWRAD 582          
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|397563876|gb|EJK43974.1| (hypothetical protein THAOC_37531, partial [Thalassiosira oceanica])

HSP 1 Score: 60.8474 bits (146), Expect = 2.654e-8
Identity = 33/109 (30.28%), Postives = 57/109 (52.29%), Query Frame = 0
Query:    4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSE-PFYANYLVPYCLNLAYTKGWEVPPVPAFEINKD--CASAQAWRQEYHELLAKNRLLG 109
            +D  ++ +PQ +I++  K +CG ++  L    RR+  DPV +  A+ MR +  FY ++L+P        KGW +PPV AFE++ +   A+   W  +     A    +G
Sbjct:  322 VDPNLQLIPQALIDFSMKKMCGILLSRLQASARRVLKDPVGNAHARRMREDVTFYRDWLLPKFRAYCEAKGWNMPPVGAFEVSDEELRATGMGWIDDGQSSTADASFIG 430          
The following BLAST results are available for this feature:
BLAST of EWM27457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109712|gb|EWM27457.1|2.543e-90100.00hypothetical protein Naga_100107g9 [Nannochloropsi... [more]
gi|585109702|gb|EWM27447.1|6.131e-8198.33transmembrane protein [Nannochloropsis gaditana][more]
gi|223999847|ref|XP_002289596.1|4.704e-930.30predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397563876|gb|EJK43974.1|2.654e-830.28hypothetical protein THAOC_37531, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3230rna3230Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications