EWM27457.1, cds3222 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|585109712|gb|EWM27457.1| (hypothetical protein Naga_100107g9 [Nannochloropsis gaditana]) HSP 1 Score: 266.159 bits (679), Expect = 2.543e-90 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 MLCLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEEQAGD 127
MLCLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEEQAGD
Sbjct: 1 MLCLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEEQAGD 127
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|585109702|gb|EWM27447.1| (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 252.677 bits (644), Expect = 6.131e-81 Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVEEE 123
LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESV++E
Sbjct: 286 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASAQAWRQEYHELLAKNRLLGDEENSGIKESVDKE 405
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|223999847|ref|XP_002289596.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974804|gb|EED93133.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 63.1586 bits (152), Expect = 4.704e-9 Identity = 30/99 (30.30%), Postives = 57/99 (57.58%), Query Frame = 0
Query: 4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSE-PFYANYLVPYCLNLAYTKGWEVPPVPAFEINKDCASA----QAWRQE 97
+D + F+PQ +I++ K +CG ++ L R++ DP+++P A+ MR + FY ++L+P GW +PPV AF+++++ A + WR +
Sbjct: 484 VDPNLHFIPQSLIDFCMKRMCGVLLSRLQATARKVVKDPIKNPHARRMREDVSFYRDWLLPKFRVYCDESGWSMPPVKAFDVSEEDLKAEGIFEGWRAD 582
BLAST of EWM27457.1 vs. NCBI_GenBank
Match: gi|397563876|gb|EJK43974.1| (hypothetical protein THAOC_37531, partial [Thalassiosira oceanica]) HSP 1 Score: 60.8474 bits (146), Expect = 2.654e-8 Identity = 33/109 (30.28%), Postives = 57/109 (52.29%), Query Frame = 0
Query: 4 LDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSE-PFYANYLVPYCLNLAYTKGWEVPPVPAFEINKD--CASAQAWRQEYHELLAKNRLLG 109
+D ++ +PQ +I++ K +CG ++ L RR+ DPV + A+ MR + FY ++L+P KGW +PPV AFE++ + A+ W + A +G
Sbjct: 322 VDPNLQLIPQALIDFSMKKMCGILLSRLQASARRVLKDPVGNAHARRMREDVTFYRDWLLPKFRAYCEAKGWNMPPVGAFEVSDEELRATGMGWIDDGQSSTADASFIG 430 The following BLAST results are available for this feature:
BLAST of EWM27457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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