EWM27468.1, cds3205 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|585109728|gb|EWM27468.1| (dihydrolipoyllysine-residue acetyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 372.859 bits (956), Expect = 6.682e-131 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query: 1 MRRVFDSALHLGRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE 179
MRRVFDSALHLGRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE
Sbjct: 1 MRRVFDSALHLGRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE 179
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|926773494|ref|XP_013895221.1| (hypothetical protein MNEG_11761 [Monoraphidium neglectum] >gi|761963643|gb|KIY96201.1| hypothetical protein MNEG_11761 [Monoraphidium neglectum]) HSP 1 Score: 80.1073 bits (196), Expect = 4.781e-16 Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 0
Query: 52 MKSGRIN-WLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMA-----VATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE 179
M+ G I WLKA G+ YD++ EV T LVEEA+R G+FAG VTLL+E+QEDG LA + TLPVG I ++ EE +A A KD+YD E Q R+ WQ+YLK+ ++
Sbjct: 1 MQEGTIRRWLKAEGKRVQQYDLLCEVDTQQLVEEAYRLGDFAGSVTLLIESQEDGVLARRLAPE-GATLPVGAPIAVVWEESGGGGGDGDADAGRLAAARRHTPPTKDVYD-ESQPSVRVLE-WQSYLKESSED 131
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|302828642|ref|XP_002945888.1| (hypothetical protein VOLCADRAFT_86312 [Volvox carteri f. nagariensis] >gi|300268703|gb|EFJ52883.1| hypothetical protein VOLCADRAFT_86312 [Volvox carteri f. nagariensis]) HSP 1 Score: 82.4185 bits (202), Expect = 4.132e-15 Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 0
Query: 39 NLVLIPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMA 140
++++P+PKL+ M SGRI W G + YD++ V T TLVEEA+R +FAG+V LL+E+QE+G++A ++ + +PVG I +LCE E E+P A
Sbjct: 28 GVIVLPMPKLSHAMTSGRIAKWHVEEGASVNTYDVLLTVETETLVEEAYRLDQFAGKVALLVESQEEGFVARLLAAE-GEEVPVGKPIALLCEREDEVPAARA 129
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|1004137812|gb|KXZ45833.1| (hypothetical protein GPECTOR_50g627 [Gonium pectorale]) HSP 1 Score: 68.1662 bits (165), Expect = 1.613e-11 Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 0
Query: 52 MKSGRIN-WLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKG 176
M SGRI W G A YD++ V T +LVEEA + +FAG V LL+E+QE+G++A ++ + +PVG + +LCE EL + ++ + +Y+ R+ WQ+YL +G
Sbjct: 1 MTSGRITKWHVTEGAAVSMYDVLMTVETESLVEEAFKVDQFAGTVALLVESQEEGFVAGLLAAEGDE-VPVGRPVAVLCERLEELAAVREAVGSGELLRGVDSVYE---SAPMRLLE-WQSYLAQG 121
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|545353812|ref|XP_005642741.1| (hypothetical protein COCSUDRAFT_45467 [Coccomyxa subellipsoidea C-169] >gi|384244699|gb|EIE18197.1| hypothetical protein COCSUDRAFT_45467 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 68.5514 bits (166), Expect = 1.530e-10 Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 51 HMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDP-SKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLK 174
HM S +APG+ YDIV EV T L E A++ G+FAG VTLL+EAQE+G + H P K + VGT + ++ E+ LPE D K P+D+Y + + I WQ++LK
Sbjct: 27 HMCSAPFQ--QAPGDEVAEYDIVMEVDTEELTENAYKVGKFAGNVTLLVEAQEEGIMHS--HLVPEGKQVKVGTPVALMAEQRESLPEL-------DGFKPPEDVYAEKEAVRTLI---WQSFLK 137
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|902175306|gb|KNA08556.1| (hypothetical protein SOVF_161540 [Spinacia oleracea]) HSP 1 Score: 62.003 bits (149), Expect = 4.578e-8 Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 0
Query: 42 LIPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKK---LPKD--LYDPEVQ 160
++ +P L+P M G I WLK G+ D++ E+ T + T+ LE+QE+GYLA S+ SK +PVG I + EE ++P+ A+ S+VK+ P+D ++D E++
Sbjct: 87 VLEMPALSPTMNEGNIAKWLKKEGDKIAVGDVLCEIETD--------------KATVELESQEEGYLAKILVSEGSKDIPVGQAIAVTVEELDDIPKVPAIGCGSEVKEAKSAPQDVSIHDKEME 197
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|159479824|ref|XP_001697986.1| (hypothetical protein CHLREDRAFT_176774 [Chlamydomonas reinhardtii] >gi|158273785|gb|EDO99571.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 59.6918 bits (143), Expect = 2.829e-7 Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 0
Query: 25 TSSGPQVSTGCISSN-LVLIPLPKLAPHMKSGRI-NWLKA---------PGEAFLC--YDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEE 131
T Q G + ++ L+ +P+PKL+ M GRI W PG YDI+ V T +LVEEA+R +FAG V+LL+E+QE+ ++A ++ + + VG I +LCE+
Sbjct: 77 TRDTAQTHVGSVPADRLIWLPMPKLSHEMTHGRIAKWHVGDSDSGSGADPGRPTHVSEYDILLTVDTDSLVEEAYRLDQFAGTVSLLVESQEEAHVAGLLVAE-GEEVEVGRPIAVLCED 195
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|757384081|gb|KIR89424.1| (pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Cryptococcus gattii VGIV IND107]) HSP 1 Score: 59.3066 bits (142), Expect = 3.443e-7 Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 0
Query: 16 RHQPVA-RCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATAS 145
R Q VA R + +S P S+ L +P ++P M G I W K GE+F D++ E+ T + T+ +EAQ+DG +A D SK + VGT I IL EE +L + A+A S
Sbjct: 17 RRQAVASRTLRTSAP-------SNALSKFAMPAMSPTMTEGGIAQWKKKEGESFSAGDVLIEIETD--------------KATIDVEAQDDGVMAKIIAQDGSKNIAVGTPIAILAEEGDDLSQADALAAES 127
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|757372005|gb|KIR77718.1| (pyruvate dehydrogenase X component [Cryptococcus gattii EJB2] >gi|761747567|gb|KIY36024.1| pyruvate dehydrogenase X component [Cryptococcus gattii E566] >gi|765282994|gb|KJE05522.1| pyruvate dehydrogenase X component [Cryptococcus gattii NT-10]) HSP 1 Score: 58.9214 bits (141), Expect = 4.363e-7 Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 0
Query: 13 RYTRHQPVARCVTSSG--PQVSTGCISSNLVL------IPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAEL-----PETMAVATASDVKKLPK 152
R TR + R + ++G P+ I+S++ + + +P ++P M G I +W K GE+F+ D++ EV T + T+ +EAQEDG + ++ +PVG +I +L EE +L PET A A AS+ K PK
Sbjct: 2 RTTRQ--ITRILQNAGVPPRTGIPSINSHIHVRYATTNMAMPAMSPTMTEGGIASWKKNEGESFVAGDVLLEVETD--------------KATIDVEAQEDGVMGKIIVQAGAQKIPVGQVIAVLAEEGDDLSSITIPETPASAPASEQPKEPK 139
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|321261357|ref|XP_003195398.1| (Pyruvate dehydrogenase protein x component, mitochondrial precursor, putative [Cryptococcus gattii WM276] >gi|317461871|gb|ADV23611.1| Pyruvate dehydrogenase protein x component, mitochondrial precursor, putative [Cryptococcus gattii WM276]) HSP 1 Score: 58.9214 bits (141), Expect = 4.533e-7 Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 0
Query: 13 RYTRHQPVARCVTSSG--PQVSTGCISSNLVL------IPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAEL-----PETMAVATASDVKKLPK 152
R TR + R + ++G P+ I+S++ + + +P ++P M G I +W K GE+F+ D++ EV T + T+ +EAQEDG + ++ +PVG +I +L EE +L PET A A AS+ K PK
Sbjct: 2 RTTRQ--ITRILQNAGVPPRTGIPSINSHIHVRYATTNMAMPAMSPTMTEGGIASWKKNEGESFVAGDVLLEVETD--------------KATIDVEAQEDGVMGKIIVQAGAQKIPVGQVIAVLAEEGDDLSSITIPETPASAPASEQPKEPK 139 The following BLAST results are available for this feature:
BLAST of EWM27468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|