EWM27468.1, cds3205 (CDS) Nannochloropsis gaditana

Overview
NameEWM27468.1
Unique Namecds3205
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1014769..1015308 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27468.1
Productdihydrolipoyllysine-residue acetyltransferase
Orig transcript idgnl|cribi|Naga_100257g2.9932.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1014769..1015308 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
Homology
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|585109728|gb|EWM27468.1| (dihydrolipoyllysine-residue acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 372.859 bits (956), Expect = 6.682e-131
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query:    1 MRRVFDSALHLGRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE 179
            MRRVFDSALHLGRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE
Sbjct:    1 MRRVFDSALHLGRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE 179          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|926773494|ref|XP_013895221.1| (hypothetical protein MNEG_11761 [Monoraphidium neglectum] >gi|761963643|gb|KIY96201.1| hypothetical protein MNEG_11761 [Monoraphidium neglectum])

HSP 1 Score: 80.1073 bits (196), Expect = 4.781e-16
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 0
Query:   52 MKSGRIN-WLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMA-----VATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKGDQE 179
            M+ G I  WLKA G+    YD++ EV T  LVEEA+R G+FAG VTLL+E+QEDG LA     +   TLPVG  I ++ EE              +A A       KD+YD E Q   R+   WQ+YLK+  ++
Sbjct:    1 MQEGTIRRWLKAEGKRVQQYDLLCEVDTQQLVEEAYRLGDFAGSVTLLIESQEDGVLARRLAPE-GATLPVGAPIAVVWEESGGGGGDGDADAGRLAAARRHTPPTKDVYD-ESQPSVRVLE-WQSYLKESSED 131          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|302828642|ref|XP_002945888.1| (hypothetical protein VOLCADRAFT_86312 [Volvox carteri f. nagariensis] >gi|300268703|gb|EFJ52883.1| hypothetical protein VOLCADRAFT_86312 [Volvox carteri f. nagariensis])

HSP 1 Score: 82.4185 bits (202), Expect = 4.132e-15
Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   39 NLVLIPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMA 140
             ++++P+PKL+  M SGRI  W    G +   YD++  V T TLVEEA+R  +FAG+V LL+E+QE+G++A    ++  + +PVG  I +LCE E E+P   A
Sbjct:   28 GVIVLPMPKLSHAMTSGRIAKWHVEEGASVNTYDVLLTVETETLVEEAYRLDQFAGKVALLVESQEEGFVARLLAAE-GEEVPVGKPIALLCEREDEVPAARA 129          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|1004137812|gb|KXZ45833.1| (hypothetical protein GPECTOR_50g627 [Gonium pectorale])

HSP 1 Score: 68.1662 bits (165), Expect = 1.613e-11
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 0
Query:   52 MKSGRIN-WLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLKKG 176
            M SGRI  W    G A   YD++  V T +LVEEA +  +FAG V LL+E+QE+G++A    ++  + +PVG  + +LCE   EL        + ++ +    +Y+       R+   WQ+YL +G
Sbjct:    1 MTSGRITKWHVTEGAAVSMYDVLMTVETESLVEEAFKVDQFAGTVALLVESQEEGFVAGLLAAEGDE-VPVGRPVAVLCERLEELAAVREAVGSGELLRGVDSVYE---SAPMRLLE-WQSYLAQG 121          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|545353812|ref|XP_005642741.1| (hypothetical protein COCSUDRAFT_45467 [Coccomyxa subellipsoidea C-169] >gi|384244699|gb|EIE18197.1| hypothetical protein COCSUDRAFT_45467 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 68.5514 bits (166), Expect = 1.530e-10
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 0
Query:   51 HMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDP-SKTLPVGTLIGILCEEEAELPETMAVATASDVKKLPKDLYDPEVQQKWRIWNGWQAYLK 174
            HM S      +APG+    YDIV EV T  L E A++ G+FAG VTLL+EAQE+G +    H  P  K + VGT + ++ E+   LPE        D  K P+D+Y  +   +  I   WQ++LK
Sbjct:   27 HMCSAPFQ--QAPGDEVAEYDIVMEVDTEELTENAYKVGKFAGNVTLLVEAQEEGIMHS--HLVPEGKQVKVGTPVALMAEQRESLPEL-------DGFKPPEDVYAEKEAVRTLI---WQSFLK 137          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|902175306|gb|KNA08556.1| (hypothetical protein SOVF_161540 [Spinacia oleracea])

HSP 1 Score: 62.003 bits (149), Expect = 4.578e-8
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 0
Query:   42 LIPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDVKK---LPKD--LYDPEVQ 160
            ++ +P L+P M  G I  WLK  G+     D++ E+ T               + T+ LE+QE+GYLA    S+ SK +PVG  I +  EE  ++P+  A+   S+VK+    P+D  ++D E++
Sbjct:   87 VLEMPALSPTMNEGNIAKWLKKEGDKIAVGDVLCEIETD--------------KATVELESQEEGYLAKILVSEGSKDIPVGQAIAVTVEELDDIPKVPAIGCGSEVKEAKSAPQDVSIHDKEME 197          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|159479824|ref|XP_001697986.1| (hypothetical protein CHLREDRAFT_176774 [Chlamydomonas reinhardtii] >gi|158273785|gb|EDO99571.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 59.6918 bits (143), Expect = 2.829e-7
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 0
Query:   25 TSSGPQVSTGCISSN-LVLIPLPKLAPHMKSGRI-NWLKA---------PGEAFLC--YDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEE 131
            T    Q   G + ++ L+ +P+PKL+  M  GRI  W            PG       YDI+  V T +LVEEA+R  +FAG V+LL+E+QE+ ++A    ++  + + VG  I +LCE+
Sbjct:   77 TRDTAQTHVGSVPADRLIWLPMPKLSHEMTHGRIAKWHVGDSDSGSGADPGRPTHVSEYDILLTVDTDSLVEEAYRLDQFAGTVSLLVESQEEAHVAGLLVAE-GEEVEVGRPIAVLCED 195          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|757384081|gb|KIR89424.1| (pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Cryptococcus gattii VGIV IND107])

HSP 1 Score: 59.3066 bits (142), Expect = 3.443e-7
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 0
Query:   16 RHQPVA-RCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATAS 145
            R Q VA R + +S P       S+ L    +P ++P M  G I  W K  GE+F   D++ E+ T               + T+ +EAQ+DG +A     D SK + VGT I IL EE  +L +  A+A  S
Sbjct:   17 RRQAVASRTLRTSAP-------SNALSKFAMPAMSPTMTEGGIAQWKKKEGESFSAGDVLIEIETD--------------KATIDVEAQDDGVMAKIIAQDGSKNIAVGTPIAILAEEGDDLSQADALAAES 127          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|757372005|gb|KIR77718.1| (pyruvate dehydrogenase X component [Cryptococcus gattii EJB2] >gi|761747567|gb|KIY36024.1| pyruvate dehydrogenase X component [Cryptococcus gattii E566] >gi|765282994|gb|KJE05522.1| pyruvate dehydrogenase X component [Cryptococcus gattii NT-10])

HSP 1 Score: 58.9214 bits (141), Expect = 4.363e-7
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 0
Query:   13 RYTRHQPVARCVTSSG--PQVSTGCISSNLVL------IPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAEL-----PETMAVATASDVKKLPK 152
            R TR   + R + ++G  P+     I+S++ +      + +P ++P M  G I +W K  GE+F+  D++ EV T               + T+ +EAQEDG +        ++ +PVG +I +L EE  +L     PET A A AS+  K PK
Sbjct:    2 RTTRQ--ITRILQNAGVPPRTGIPSINSHIHVRYATTNMAMPAMSPTMTEGGIASWKKNEGESFVAGDVLLEVETD--------------KATIDVEAQEDGVMGKIIVQAGAQKIPVGQVIAVLAEEGDDLSSITIPETPASAPASEQPKEPK 139          
BLAST of EWM27468.1 vs. NCBI_GenBank
Match: gi|321261357|ref|XP_003195398.1| (Pyruvate dehydrogenase protein x component, mitochondrial precursor, putative [Cryptococcus gattii WM276] >gi|317461871|gb|ADV23611.1| Pyruvate dehydrogenase protein x component, mitochondrial precursor, putative [Cryptococcus gattii WM276])

HSP 1 Score: 58.9214 bits (141), Expect = 4.533e-7
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 0
Query:   13 RYTRHQPVARCVTSSG--PQVSTGCISSNLVL------IPLPKLAPHMKSGRI-NWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAEL-----PETMAVATASDVKKLPK 152
            R TR   + R + ++G  P+     I+S++ +      + +P ++P M  G I +W K  GE+F+  D++ EV T               + T+ +EAQEDG +        ++ +PVG +I +L EE  +L     PET A A AS+  K PK
Sbjct:    2 RTTRQ--ITRILQNAGVPPRTGIPSINSHIHVRYATTNMAMPAMSPTMTEGGIASWKKNEGESFVAGDVLLEVETD--------------KATIDVEAQEDGVMGKIIVQAGAQKIPVGQVIAVLAEEGDDLSSITIPETPASAPASEQPKEPK 139          
The following BLAST results are available for this feature:
BLAST of EWM27468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109728|gb|EWM27468.1|6.682e-131100.00dihydrolipoyllysine-residue acetyltransferase [Nan... [more]
gi|926773494|ref|XP_013895221.1|4.781e-1641.79hypothetical protein MNEG_11761 [Monoraphidium neg... [more]
gi|302828642|ref|XP_002945888.1|4.132e-1542.72hypothetical protein VOLCADRAFT_86312 [Volvox cart... [more]
gi|1004137812|gb|KXZ45833.1|1.613e-1134.13hypothetical protein GPECTOR_50g627 [Gonium pector... [more]
gi|545353812|ref|XP_005642741.1|1.530e-1039.20hypothetical protein COCSUDRAFT_45467 [Coccomyxa s... [more]
gi|902175306|gb|KNA08556.1|4.578e-832.00hypothetical protein SOVF_161540 [Spinacia olerace... [more]
gi|159479824|ref|XP_001697986.1|2.829e-735.00hypothetical protein CHLREDRAFT_176774 [Chlamydomo... [more]
gi|757384081|gb|KIR89424.1|3.443e-733.33pyruvate dehydrogenase complex dihydrolipoamide ac... [more]
gi|757372005|gb|KIR77718.1|4.363e-730.52pyruvate dehydrogenase X component [Cryptococcus g... [more]
gi|321261357|ref|XP_003195398.1|4.533e-730.52Pyruvate dehydrogenase protein x component, mitoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3213rna3213Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications