EWM27520.1, cds3147 (CDS) Nannochloropsis gaditana

Overview
NameEWM27520.1
Unique Namecds3147
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:863847..865424 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27520.1
Productpresenilin-like protein
Orig transcript idgnl|cribi|Naga_100101g18.9058.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:863847..865424 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001108Peptidase_A22A
IPR006639Preselin/SPP
Homology
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|585109786|gb|EWM27520.1| (presenilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1060.06 bits (2740), Expect = 0.000e+0
Identity = 525/525 (100.00%), Postives = 525/525 (100.00%), Query Frame = 0
Query:    1 MSRTSPSLPDSLPASHVRREPTSTSYEGRSPQLPLADASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTPIYV 525
            MSRTSPSLPDSLPASHVRREPTSTSYEGRSPQLPLADASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTPIYV
Sbjct:    1 MSRTSPSLPDSLPASHVRREPTSTSYEGRSPQLPLADASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTPIYV 525          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|1210512444|dbj|GAX28476.1| (presenilin 1 [Fistulifera solaris])

HSP 1 Score: 315.849 bits (808), Expect = 7.381e-98
Identity = 214/518 (41.31%), Postives = 291/518 (56.18%), Query Frame = 0
Query:   42 EGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQG--------VSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEP-MPGLLYEAELPGHARH-----HHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRL--------QAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQ-------HHPPHPSRSLRRVSRSQGGETLLEDGMGSP-----VEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTPIYV 525
            E + IE+++YS++S++A+ KPV LTM L++L VV +      QG           ++++D       G S+   L  SL NAL IV VICG TF++V+LY+ + MKCL GYM   S  LLG++GG +  TA+  +++P D  TF + +YNF  VGV+A+F+ +GIPT VTQGYLV  SVI+AW LS F++WT W LL++LALYDLCAVLTPCGPL++LV  M +   P MPGLL+EAELP  A+        R   + +    ER+      +  +DG  E   V++        Q PV    + S ++    ++     T+  SPL    D T   P      Q         P H  R L  V R      L  D  G P     V+   +   E + G+  +                     PE+  SI+LGLGDF+FYSVLV KAA Y FAT AAC LVI+AGLG TLVLLSV+  ALPALPISI +G++FY+LTR  I P+++A++  P YV
Sbjct:   60 EQMTIEELIYSSSSYYAIAKPVTLTMVLSALAVVLINDDATKQGNEAAMANAYQYFSVNDA------GQSSGQNLAHSLANALIIVSVICGMTFMIVVLYRMKFMKCLIGYMIFCSGTLLGMLGGNVLQTAVQVYNIPVDKGTFYLFVYNFCIVGVLAVFFGQGIPTSVTQGYLVATSVILAWHLSFFDDWTAWTLLLMLALYDLCAVLTPCGPLKFLVEAMSQEGSPEMPGLLFEAELPPEAKRPVGSSRGRANIAASASDVERSAPPNPVSQPMDGSSESPRVKIPLAIAKVYQLPVVSIPSSSMSIMFPDRSSDTIGTT--SPLLTNSDSTVILPENPTAEQLLAKVVVRLPAHGGR-LEHVQRRGKKVYLERDRHGVPKRYLWVDRNGKVFAEMKDGDEEK---------------------PEKN-SIRLGLGDFIFYSVLVAKAAQYSFATFAACILVILAGLGGTLVLLSVYHHALPALPISIFMGIVFYVLTRWFIEPWVEAVLEKPYYV 546          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|673018012|ref|XP_008862967.1| (hypothetical protein H310_01595 [Aphanomyces invadans] >gi|574482170|gb|ETW09162.1| hypothetical protein H310_01595 [Aphanomyces invadans])

HSP 1 Score: 308.531 bits (789), Expect = 3.580e-96
Identity = 200/491 (40.73%), Postives = 263/491 (53.56%), Query Frame = 0
Query:   37 DASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNV----AFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGS----ERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALV 519
            D   +  +DIED+++S  SF AVL PV LTM L+S   + +    A A   Q   VY  DD D+D       S  LG + VNAL IV     ATFV+V+ YKF+    L GYM LSS +LLG +GG L   AL    +P D +++  ++YNFA VGV++IFYQKG+   +TQ YLV +S+IMAWQLS+F EWT WAL+VVLA YDLCAVLTPCGPL+ LV L+Q+   P+PGLLYEAE+     H     PS   RG     E+ATG   +          DD           +  P +A  S   T   T+           T   P    L   +  +   ++ RV           D + +  EG        ER    +    +GP +             E + +IKLGLGDFVFYSVLV +AA++      AC + I+ GLG+TL LLSV++KALPALPISI LGV  YL  R  ++ ++D+ V
Sbjct:   22 DTQESPEVDIEDLMHSLGSFQAVLLPVTLTMVLSSFASILIRDPDAAAQMAQAYLVYKPDDSDSD-------SALLGHAFVNALAIVCFFIVATFVIVICYKFKFTNFLVGYMFLSSAVLLGFLGGRLAEVALENLSVPVDVWSYWFIMYNFAVVGVLSIFYQKGVNMSLTQSYLVAVSIIMAWQLSKFPEWTTWALVVVLAFYDLCAVLTPCGPLKCLVNLIQQEGRPLPGLLYEAEV-QRTFHSDAHSPSYYQRGGPPCPEQATGTQTTCTFTRRRSRPDD-----------SHEPLLAAASSTDTSEMTT-----------TAKLPLRDRLVAFYNEYNPSAIERV-----------DQVLAIYEG-------RERDLWNDLAAKYGPHDD-----------DEDDNTIKLGLGDFVFYSVLVSRAAMFDVMAMIACLVSILMGLGSTLFLLSVYKKALPALPISILLGVAIYLWVRFVLVDFMDSTV 453          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|673018014|ref|XP_008862968.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574482171|gb|ETW09163.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 308.145 bits (788), Expect = 4.619e-96
Identity = 200/491 (40.73%), Postives = 263/491 (53.56%), Query Frame = 0
Query:   37 DASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNV----AFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGS----ERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALV 519
            D   +  +DIED+++S  SF AVL PV LTM L+S   + +    A A   Q   VY  DD D+D       S  LG + VNAL IV     ATFV+V+ YKF+    L GYM LSS +LLG +GG L   AL    +P D +++  ++YNFA VGV++IFYQKG+   +TQ YLV +S+IMAWQLS+F EWT WAL+VVLA YDLCAVLTPCGPL+ LV L+Q+   P+PGLLYEAE+     H     PS   RG     E+ATG   +          DD           +  P +A  S   T   T+           T   P    L   +  +   ++ RV           D + +  EG        ER    +    +GP +             E + +IKLGLGDFVFYSVLV +AA++      AC + I+ GLG+TL LLSV++KALPALPISI LGV  YL  R  ++ ++D+ V
Sbjct:   14 DTQESPEVDIEDLMHSLGSFQAVLLPVTLTMVLSSFASILIRDPDAAAQMAQAYLVYKPDDSDSD-------SALLGHAFVNALAIVCFFIVATFVIVICYKFKFTNFLVGYMFLSSAVLLGFLGGRLAEVALENLSVPVDVWSYWFIMYNFAVVGVLSIFYQKGVNMSLTQSYLVAVSIIMAWQLSKFPEWTTWALVVVLAFYDLCAVLTPCGPLKCLVNLIQQEGRPLPGLLYEAEV-QRTFHSDAHSPSYYQRGGPPCPEQATGTQTTCTFTRRRSRPDD-----------SHEPLLAAASSTDTSEMTT-----------TAKLPLRDRLVAFYNEYNPSAIERV-----------DQVLAIYEG-------RERDLWNDLAAKYGPHDD-----------DEDDNTIKLGLGDFVFYSVLVSRAAMFDVMAMIACLVSILMGLGSTLFLLSVYKKALPALPISILLGVAIYLWVRFVLVDFMDSTV 445          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|673020622|ref|XP_008864272.1| (hypothetical protein H310_02517 [Aphanomyces invadans] >gi|574479203|gb|ETW06197.1| hypothetical protein H310_02517 [Aphanomyces invadans])

HSP 1 Score: 300.056 bits (767), Expect = 7.446e-92
Identity = 189/519 (36.42%), Postives = 268/519 (51.64%), Query Frame = 0
Query:   21 PTSTSYEGRSPQLP---LADASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTA---LIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELP---GHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQ-SSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGES--ERGERGESGRGHGPSE-----GLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTP 522
            P S+ + G +P       AD  +      ED+++  NSFWAV+ PV +TM +AS+ VVN      ++ +  Y + +   +  G D+  V +G SLVNAL ++G + G TF + LLYKF CM+ L GY+  SS+ +LG +GG L  T     + W  P D+ +F+ ++ NF+FVGVVAIFYQKG+  W+   YLV++SVI+AWQ S + EWT W   ++ A YDLCAVLTPCGPL+ L+ L+QE   PMPGLLYEAE+    G+A  H+    + A R    ++   +SA                P  +     P               PP+ + P LDG   ++P   H         +      +R    +T   D + +           S   +      G    P        L +    +    + +++IKLGLGDF+FYSVLVG+AA++ F TC  CF+ I+ GLG TL LLSV  KALPALPISI L   FY   R  +  +   + S P
Sbjct:   54 PASSDHPGDAPTSAPHVSADEQQEREETAEDLMHGINSFWAVVWPVCVTMVIASVAVVNCRSRALERSMGSYLVYN---EVQGADAGQV-VGHSLVNALVVIGFVTGLTFFMALLYKFNCMRILVGYIMFSSSAILGFVGGQLVDTVNDTYLHW--PIDWVSFLFIMVNFSFVGVVAIFYQKGVAKWIQNTYLVLVSVILAWQFSMWPEWTTWIFCIMFACYDLCAVLTPCGPLKVLINLIQEKQAPMPGLLYEAEVRDGVGNAAAHNSSATAPAPRRPPTSSSGPSSAAR--------------PPREPRQIDP---------------PPTAVPPSLDGVDLTAPFDVHDCATEDEFKALLFAFYARYSPDDTWKVDQVAARFFANQPRMWPSLFHKYMVCSCGTDGVPCSVQIAIDLRNQQQRRDHDDDDDKTIKLGLGDFIFYSVLVGRAAIFDFTTCVICFVCILMGLGGTLFLLSVLHKALPALPISIFLATAFYFWARYTLTAFCTFVTSVP 537          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|299117501|emb|CBN74004.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 294.278 bits (752), Expect = 3.708e-89
Identity = 150/232 (64.66%), Postives = 174/232 (75.00%), Query Frame = 0
Query:   43 GLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNV---AFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAEL 271
             LD  DV YSANSF AV+KPV L M L++ + V++   A    +  +SVY + D        D +SV+LGKS VNAL IV V+  ATFV+V +Y  RCM+CL GYMA+SS +LLG+MGG +W  AL  + LPCD FT+  VL+NFA VGVVAIFYQKGIPT VTQ YLV  S+IMAWQLSRFEEWTGW LLVVLALYDLCAVLTPCGPL+ LV LMQEY EPMPGLLYEAEL
Sbjct:   56 ALDQADVAYSANSFMAVVKPVTLCMTLSAFITVSLYSDAEGATNSALSVYEVYDEST--TTLDPSSVRLGKSFVNALIIVLVLAAATFVIVWMYWMRCMRCLVGYMAMSSAVLLGVMGGAVWAAALEVYQLPCDAFTYYGVLWNFAVVGVVAIFYQKGIPTVVTQAYLVATSIIMAWQLSRFEEWTGWCLLVVLALYDLCAVLTPCGPLKALVNLMQEYEEPMPGLLYEAEL 285          

HSP 2 Score: 129.413 bits (324), Expect = 2.396e-28
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 0
Query:  439 SIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYIDALVSTPIY 524
            SIKLGLGDFVFYSVLV KAALYGF   AAC +VI+ GLGATLVLL+V+R ALPALPISIG G +FYLLTR +I PY++AL  TP+Y
Sbjct:  496 SIKLGLGDFVFYSVLVSKAALYGFTAWAACVVVIVFGLGATLVLLAVYRMALPALPISIGFGTVFYLLTRFSIQPYVEALNETPLY 581          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|813119216|ref|XP_012196195.1| (hypothetical protein SPRG_02256 [Saprolegnia parasitica CBS 223.65] >gi|641539640|gb|KDO33449.1| hypothetical protein SPRG_02256 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 288.886 bits (738), Expect = 1.693e-88
Identity = 201/481 (41.79%), Postives = 261/481 (54.26%), Query Frame = 0
Query:   40 RAEGLDIEDVLYSANSFWAVLKPVALTMFLASLV-VVNVAFATEDQGVSVYAI---DDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYID 516
             A  +D+ D+L+S  SF AVL PV +TM L+SL   V     T DQ    Y +   +DG++DG+        LG ++VNAL IVGV   ATFV+V  YKF+    L GYM  SS +LLG++GG L    L R D+  D  ++ IV+YNFA VGV++IFYQKG+P  VTQ YLV +SVIMAWQLS+F EWT WAL+VVLA YDLCAVLTPCGPL+ LV L+Q    P+PGLLYEAE+    R  H  P      G   +  A A+  S    C     R +    DD       +L ++A T     PP  L P       +     L   +  +   +L RV           D + +  E           G  G+  R      GL +         E++ +IKLGLGDFVFYSVLV +AALY  +   AC + I+ GLG TL LL + ++ALPALPISI LGV  Y   R  +  +++
Sbjct:   21 EAGSIDVHDILHSLGSFRAVLLPVTMTMLLSSLASAVLTDPETADQIAHAYLVYLPEDGESDGS-------LLGHAIVNALAIVGVFVIATFVIVFCYKFQFTNFLVGYMFFSSAVLLGVLGGHLATVLLERLDVAVDILSWSIVMYNFAIVGVLSIFYQKGLPMSVTQSYLVAVSVIMAWQLSKFPEWTTWALVVVLAFYDLCAVLTPCGPLKCLVNLIQSEGRPLPGLLYEAEV--QTRFDHTEPKYYQHGGPLPSVTATATTAS--DVCSFARRRSKPQDEDDD------SLETEAQTEPLLPPPVVLKP------KTSVRDRLVAFYTAYNPDALDRV-----------DSILAMYE-----------GREGDLWRDLERKYGLDTDD-------EEDNTIKLGLGDFVFYSVLVSRAALYDVSAMWACAVAILMGLGGTLFLLGIHKQALPALPISILLGVAVYFWMRCVLFDFMN 449          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|669159372|ref|XP_008615248.1| (hypothetical protein SDRG_11008 [Saprolegnia diclina VS20] >gi|530733165|gb|EQC31407.1| hypothetical protein SDRG_11008 [Saprolegnia diclina VS20])

HSP 1 Score: 285.419 bits (729), Expect = 3.815e-87
Identity = 199/482 (41.29%), Postives = 260/482 (53.94%), Query Frame = 0
Query:   40 RAEGLDIEDVLYSANSFWAVLKPVALTMFLASLV-VVNVAFATEDQGVSVYAI---DDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPG-GTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPYID 516
             A  +D+ D+L+S  SF AVL PV +TM L+SL   V     T DQ    Y +   +DG++DG+        LG ++VNAL IVGV   ATFV+V  YKF+    L GYM  SS +LLG++GG L    L R D+  D  ++ IV+YNFA VGV++IFYQKG+P  VTQ YLV +SVIMAWQLS+F EWT WAL+VVLA YDLCAVLTPCGPL+ LV L+Q    P+PGLLYEAE+    R  H  P      G   A     +A  +         R   P  +D       +L  +A T     PP P+       +  P     L   +  +   +L R+           D + +  E           G  G+  R      GL +         E++ +IKLGLGDFVFYSVLV +AALY  A   AC + I+ GLG TL LL + ++ALPALPISI LGV  Y+  R  +  +++
Sbjct:   21 EAGAIDVHDILHSLGSFRAVLLPVTMTMLLSSLASAVLTDPETADQIAHAYLVYLPEDGESDGS-------LLGHAIVNALAIVGVFVIATFVIVFCYKFQFTNFLVGYMFFSSAVLLGILGGHLATVLLERLDVAVDILSWSIVMYNFAIVGVLSIFYQKGLPMSVTQSYLVAVSVIMAWQLSKFPEWTTWALVVVLAFYDLCAVLTPCGPLKCLVNLIQSEGRPLPGLLYEAEV--QTRFDHSEPNYYQHGGPLPAITTTTTASDVCSFAR----RRSKPQDEDEE-----SLEKEAQT-EPLLPPQPV-----AKKPKPSVRDRLVAFYTAYNPDALSRI-----------DNILAMYE-----------GREGDLWRDLERKYGLDTDD-------EEDNTIKLGLGDFVFYSVLVSRAALYDVAAMWACAVAILVGLGGTLFLLGIHKQALPALPISILLGVAVYVWMRCVLFEFMN 449          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|1210531819|dbj|GAX09612.1| (presenilin 1 [Fistulifera solaris])

HSP 1 Score: 299.671 bits (766), Expect = 1.314e-86
Identity = 208/504 (41.27%), Postives = 283/504 (56.15%), Query Frame = 0
Query:   38 ASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQG--------VSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEP-MPGLLYEAELPGHARH-----HHRIPPSTALRGSERATGALASAGSLDGGCEGDDVRL--------QAPVGDDGAFSPAMAL-GSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGS-PVEGGN-EHGGES------ERGERGESGRGHGPSEGLSSSSHHQGGTPE--QERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTR 508
            +S  E + +E+++YS++S++A+ KPV LTM L++L VV +      QG           ++++D       G S+   L  SL NAL IV  ICG TF++V+LY+ + MKCL GYM   S  LLG++GG +  TA+  +++P D  TF + LYNF  VGV+A+F+ +GIPT VTQGYLV  SVI+AW LS F++WT W LL++LALYDLCAVLTPCGPL++LV  M +   P MPGLL+EAELP  A+        R   + +    ER+  +   +   DG  E   V++        Q PV    + S ++      + T+ +TS      PLL  + S+          P +PS            E LL   +   P  GG  EH          ER   G   R           +  + G  E  ++ SI+LGLGDF+FYSVLV KAA Y FAT AAC LVI+AGLG TLVLLSV+  ALPALPISI +G++FY+ TR
Sbjct:   55 SSEGEQMTVEELIYSSSSYYAIAKPVTLTMVLSALAVVLINDDATKQGNEAAMASAYQYFSVNDA------GQSSGQNLAYSLANALIIVSAICGMTFMIVVLYRMKFMKCLIGYMIFCSGTLLGMLGGNVLQTAVQVYNIPIDKGTFYLFLYNFCIVGVLAVFFGQGIPTTVTQGYLVATSVILAWHLSFFDDWTAWTLLLMLALYDLCAVLTPCGPLKFLVEAMSQEGSPEMPGLLFEAELPPEAKRPGGSSRGRANIAASASDVERSAPSNPISQPTDGLSESPRVKIPLAIAKVYQLPVVSIPSSSMSIMFPDRNSDTIGTTS------PLLTNSDSTII-------LPDNPS-----------AEQLLAKVVVRLPAHGGRLEHVQRRGKKVYLERDRHGVPKRYLWVDRNGKVFAEMKDGDEEKPEKNSIRLGLGDFIFYSVLVAKAAQYSFATFAACILVILAGLGGTLVLLSVYHHALPALPISIFMGIVFYVFTR 528          
BLAST of EWM27520.1 vs. NCBI_GenBank
Match: gi|567954192|gb|ETK79830.1| (hypothetical protein L915_14322 [Phytophthora parasitica] >gi|567982846|gb|ETL33249.1| hypothetical protein L916_14227 [Phytophthora parasitica] >gi|568012358|gb|ETL86536.1| hypothetical protein L917_14018 [Phytophthora parasitica] >gi|568042370|gb|ETM39701.1| hypothetical protein L914_14144 [Phytophthora parasitica] >gi|570320495|gb|ETO68443.1| hypothetical protein F444_14706 [Phytophthora parasitica P1976] >gi|570944317|gb|ETP09574.1| hypothetical protein F441_14560 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 277.33 bits (708), Expect = 3.273e-84
Identity = 194/505 (38.42%), Postives = 264/505 (52.28%), Query Frame = 0
Query:   12 LPASHVRREPTSTSYEGRSPQLPLADASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVS-VYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGGLLWYTALIRWDLPCDYFTFVIVLYNFAFVGVVAIFYQKGIPTWVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLRYLVGLMQEYNEPMPGLLYEAELPGHARHHHRIPPSTALRGSERATGALASAGSLDGGCEGD-DVRLQAPVGDDGAFSPAMALGSQAHTVHSTSPPSPLDPLLDGTQSSPGGTHLGQHHPPHPSRSLRRVSRSQGGETLLEDGMGSPVEGGNEHGGESERGERGESGRGHGPSEGLSSSSHHQGGTPEQERSIKLGLGDFVFYSVLVGKAALYGFATCAACFLVIIAGLGATLVLLSVFRKALPALPISIGLGVLFYLLTRVAIIPY 514
            LPA   R   TS  Y+G             +    E++L+S  SF AV+ PVA+TM LAS V +NV      + ++  Y I   D D   G S   K+  +LVNAL IV     ATFV+V  YKF   + L GYM  SS MLLG++GG +    + ++++P D FT +  +YNF+ VGV++IFYQKG P W+TQ YLV  SVIMAWQL +F EW+ WAL++VLA YDLCAVLTPCGPL++LV L+Q+   P+PGLLYEAE+    R +H    +  +R             ++   CE +  +RL +P   D    P     S  HT  +         L++            +H+P   SR  + + R  G ET L   +             +++GE  E                          +IKLGLGDFVFYSVLV +AA Y F+    C + ++ GLG TL LL +++KALPALPISI L V+ Y   RV  + +
Sbjct:   17 LPA---RPRQTSQDYDGE------------DAFTHEELLHSIGSFSAVVWPVAVTMLLASFVSLNVEDPASAKALAEAYLIYGPDQDK--GASTGTKMTDALVNALAIVSFFLVATFVIVCCYKFNFNRILIGYMMFSSAMLLGMLGGNMLVIVIAKFEIPIDVFTLLFAMYNFSVVGVLSIFYQKGTPMWLTQTYLVATSVIMAWQLGQFPEWSTWALVIVLAFYDLCAVLTPCGPLKWLVNLVQQEGRPLPGLLYEAEI----RRNHSGHTAQPVR------------ENVYYQCESEIPLRLGSP--RDVPEGPT----SSTHTSLTPRQAQLRARLIE---------FYSKHNPSAISRVDKILERYHGRETELWHDL--------YQKYVTDQGEVDE--------------------------TIKLGLGDFVFYSVLVSRAAKYDFSAMIGCLVSVLMGLGGTLFLLGIYQKALPALPISILLAVMMYFWLRVVFVDF 439          
The following BLAST results are available for this feature:
BLAST of EWM27520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109786|gb|EWM27520.1|0.000e+0100.00presenilin-like protein [Nannochloropsis gaditana][more]
gi|1210512444|dbj|GAX28476.1|7.381e-9841.31presenilin 1 [Fistulifera solaris][more]
gi|673018012|ref|XP_008862967.1|3.580e-9640.73hypothetical protein H310_01595 [Aphanomyces invad... [more]
gi|673018014|ref|XP_008862968.1|4.619e-9640.73hypothetical protein, variant [Aphanomyces invadan... [more]
gi|673020622|ref|XP_008864272.1|7.446e-9236.42hypothetical protein H310_02517 [Aphanomyces invad... [more]
gi|299117501|emb|CBN74004.1|3.708e-8964.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|813119216|ref|XP_012196195.1|1.693e-8841.79hypothetical protein SPRG_02256 [Saprolegnia paras... [more]
gi|669159372|ref|XP_008615248.1|3.815e-8741.29hypothetical protein SDRG_11008 [Saprolegnia dicli... [more]
gi|1210531819|dbj|GAX09612.1|1.314e-8641.27presenilin 1 [Fistulifera solaris][more]
gi|567954192|gb|ETK79830.1|3.273e-8438.42hypothetical protein L915_14322 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3155rna3155Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications