EWM27554.1, cds3144 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|585109821|gb|EWM27554.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query: 1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKMAGRRR 252
MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKMAGRRR
Sbjct: 1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKMAGRRR 252
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|585109820|gb|EWM27553.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0 Identity = 251/253 (99.21%), Postives = 252/253 (99.60%), Query Frame = 0
Query: 1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAA-SQEQLMYQQQKKGKMAGRRR 252
MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAA +QEQLMYQQQKKGKMAGRRR
Sbjct: 1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAALAQEQLMYQQQKKGKMAGRRR 253
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|585111824|gb|EWM29300.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 94.7449 bits (234), Expect = 5.210e-20 Identity = 58/181 (32.04%), Postives = 100/181 (55.25%), Query Frame = 0
Query: 50 PGPNAIELGKENKRATYTAIAGGVLAGYWLSGWN-----YRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYI 225
P P ++G+++ + + G + L+ W+ YR + K++KQ AHQ K+ + I S +Q+ E ++ + E Y + Y+++ + + + P+ ++ AEFK PD N D+KI+R EF+ Y+R Y AA+PE + +YPSFD+FD DG ++FAEW+Q+I
Sbjct: 38 PRPEFRDIGRKDSGRFWGMMKTGAVGA--LASWSFGQLYYRWQAKRLKQ------AHQ-KKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPN---KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFI 206
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|219127112|ref|XP_002183787.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405024|gb|EEC44969.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 80.8777 bits (198), Expect = 1.394e-14 Identity = 51/146 (34.93%), Postives = 83/146 (56.85%), Query Frame = 0
Query: 78 WLSGWNYRSK--NKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
W+ G + S KK+K K+++ ++K++ Q Y DV + E+ + LQY+ + EA + +LQ+DY EFKQPD++GDD+I+R EF+ Y++ YL+ P S+ DYP F++FD DGD ++F E+
Sbjct: 76 WMLGAKFHSGRVTKKLKAKFQK----EQKQL------YSQYYNDVYK-----LTEQNQELQYMVEQLKEALQSTESK--HELEALQRDYDEFKQPDIDGDDRISRAEFNMYVKNYLSNYPGLSEKDYPKFEDFDHDGDGFVSFQEY 204
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|1210522084|dbj|GAX19137.1| (hypothetical protein FisN_3Lh079 [Fistulifera solaris]) HSP 1 Score: 78.5666 bits (192), Expect = 9.445e-14 Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 0
Query: 159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQL 237
+LQ+DY EFKQPD++GDD+I+R EF+ Y+R YL+ P + DYP F++FD DGD ++F E+ Q + A +EQ+
Sbjct: 144 ALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQMALQAQKAEREQM 222
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|1210525539|dbj|GAX15608.1| (hypothetical protein FisN_3Hh079 [Fistulifera solaris]) HSP 1 Score: 78.5666 bits (192), Expect = 1.004e-13 Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 0
Query: 159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQL 237
+LQ+DY EFKQPD++GDD+I+R EF+ Y+R YL+ P + DYP F++FD DGD ++F E+ Q + A +EQ+
Sbjct: 144 ALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQMALQAQKAEKEQM 222
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|298708691|emb|CBJ49188.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.0258 bits (188), Expect = 4.326e-13 Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 0
Query: 29 GQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSM-------VSPSA-SLQQD---YAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYI 225
G + Q+ H+ G + P G N + L AIAG + +W S + + NK ++Q+ +A K DA+ + R +L + EE L + A +AG+ + P A S+QQD Y EFKQPD +GD+ I++ EF QY+R+YL+ P+ ++ D P F++FD + D ++F EWQ Y+
Sbjct: 34 GARMQEHHQ----GAGLYQEPQGSNKLVL-------LAGAIAGASIE-WWWSARSAKKGNKLLEQESAAFIAEWNKE-RDALMARRTYPIKLLAHEVEE---ADVQLMQLVAAAEDAGVDLGAGGSGLGGGATRPKARSIQQDNMEYEEFKQPDTDGDNVISKTEFYQYIRKYLSLYPDTAEMDIPHFEDFDLNNDGVVSFDEWQMYL 225
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|397625411|gb|EJK67786.1| (hypothetical protein THAOC_11134 [Thalassiosira oceanica]) HSP 1 Score: 73.1738 bits (178), Expect = 7.215e-12 Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 0
Query: 159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
+LQ++Y EFKQPD +GDD+I+R EF Y++ YL+ P ++ DYP F++FD DGD ++F E+
Sbjct: 128 NLQREYDEFKQPDTDGDDRISRTEFVSYVKNYLSNYPGLTEKDYPKFEDFDHDGDGYVSFQEY 190
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|223994983|ref|XP_002287175.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976291|gb|EED94618.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 73.9442 bits (180), Expect = 7.355e-12 Identity = 30/63 (47.62%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
+LQ++Y EFKQPD++GDD+I+R EF+ Y++ YL+ P ++ DYP F++FD D D ++F E+
Sbjct: 171 ALQREYDEFKQPDVDGDDRISRTEFNMYVKNYLSNYPGLTEKDYPKFEDFDHDHDGYVSFQEY 233
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|1072233733|gb|OEU18463.1| (hypothetical protein FRACYDRAFT_260404 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 73.1738 bits (178), Expect = 9.815e-12 Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 0
Query: 159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
+LQ+DY EFKQPDL+ DD+I+R EF Y++ YL+ P ++ DYP F++FD DG+ ++F E+
Sbjct: 162 ALQRDYDEFKQPDLDSDDRISRAEFSMYVKDYLSNYPGLTEKDYPKFEDFDHDGNGFVSFEEY 224 The following BLAST results are available for this feature:
BLAST of EWM27554.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|