EWM27554.1, cds3144 (CDS) Nannochloropsis gaditana

Overview
NameEWM27554.1
Unique Namecds3144
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:861014..861088 -
Alignment locationCM002460.1:860816..860925 -
Alignment locationCM002460.1:860598..860712 -
Alignment locationCM002460.1:860301..860417 -
Alignment locationCM002460.1:859906..860034 -
Alignment locationCM002460.1:859543..859693 -
Alignment locationCM002460.1:859363..859424 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27554.1
ProductEF-Hand 1, calcium-binding site
Orig transcript idgnl|cribi|Naga_100015g2.6370.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:861014..861088 -
CM002460.1supercontigCM002460.1:860816..860925 -
CM002460.1supercontigCM002460.1:860598..860712 -
CM002460.1supercontigCM002460.1:860301..860417 -
CM002460.1supercontigCM002460.1:859906..860034 -
CM002460.1supercontigCM002460.1:859543..859693 -
CM002460.1supercontigCM002460.1:859363..859424 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Homology
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|585109821|gb|EWM27554.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKMAGRRR 252
            MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKMAGRRR
Sbjct:    1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKMAGRRR 252          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|585109820|gb|EWM27553.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0
Identity = 251/253 (99.21%), Postives = 252/253 (99.60%), Query Frame = 0
Query:    1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAA-SQEQLMYQQQKKGKMAGRRR 252
            MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAA +QEQLMYQQQKKGKMAGRRR
Sbjct:    1 MASRRGNASYGIHKFFLVSILFLVQTAVGQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAALAQEQLMYQQQKKGKMAGRRR 253          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|585111824|gb|EWM29300.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 94.7449 bits (234), Expect = 5.210e-20
Identity = 58/181 (32.04%), Postives = 100/181 (55.25%), Query Frame = 0
Query:   50 PGPNAIELGKENKRATYTAIAGGVLAGYWLSGWN-----YRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYI 225
            P P   ++G+++    +  +  G +    L+ W+     YR + K++KQ      AHQ K+ +  I S +Q+ E ++ +  E Y     +  Y+++ + +    +      P+   ++  AEFK PD N D+KI+R EF+ Y+R Y AA+PE +  +YPSFD+FD DG   ++FAEW+Q+I
Sbjct:   38 PRPEFRDIGRKDSGRFWGMMKTGAVGA--LASWSFGQLYYRWQAKRLKQ------AHQ-KKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPN---KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFI 206          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|219127112|ref|XP_002183787.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405024|gb|EEC44969.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.8777 bits (198), Expect = 1.394e-14
Identity = 51/146 (34.93%), Postives = 83/146 (56.85%), Query Frame = 0
Query:   78 WLSGWNYRSK--NKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
            W+ G  + S    KK+K K+++    ++K++        Q Y DV +       E+ + LQY+   + EA    +        +LQ+DY EFKQPD++GDD+I+R EF+ Y++ YL+  P  S+ DYP F++FD DGD  ++F E+
Sbjct:   76 WMLGAKFHSGRVTKKLKAKFQK----EQKQL------YSQYYNDVYK-----LTEQNQELQYMVEQLKEALQSTESK--HELEALQRDYDEFKQPDIDGDDRISRAEFNMYVKNYLSNYPGLSEKDYPKFEDFDHDGDGFVSFQEY 204          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|1210522084|dbj|GAX19137.1| (hypothetical protein FisN_3Lh079 [Fistulifera solaris])

HSP 1 Score: 78.5666 bits (192), Expect = 9.445e-14
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 0
Query:  159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQL 237
            +LQ+DY EFKQPD++GDD+I+R EF+ Y+R YL+  P   + DYP F++FD DGD  ++F E+ Q +      A +EQ+
Sbjct:  144 ALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQMALQAQKAEREQM 222          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|1210525539|dbj|GAX15608.1| (hypothetical protein FisN_3Hh079 [Fistulifera solaris])

HSP 1 Score: 78.5666 bits (192), Expect = 1.004e-13
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 0
Query:  159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQL 237
            +LQ+DY EFKQPD++GDD+I+R EF+ Y+R YL+  P   + DYP F++FD DGD  ++F E+ Q +      A +EQ+
Sbjct:  144 ALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQMALQAQKAEKEQM 222          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|298708691|emb|CBJ49188.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0258 bits (188), Expect = 4.326e-13
Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 0
Query:   29 GQQQQQLHRYPGPGGPPRRRPPGPNAIELGKENKRATYTAIAGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSM-------VSPSA-SLQQD---YAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYI 225
            G + Q+ H+    G    + P G N + L          AIAG  +  +W S  + +  NK ++Q+    +A   K   DA+ + R     +L  + EE       L  +  A  +AG+ +             P A S+QQD   Y EFKQPD +GD+ I++ EF QY+R+YL+  P+ ++ D P F++FD + D  ++F EWQ Y+
Sbjct:   34 GARMQEHHQ----GAGLYQEPQGSNKLVL-------LAGAIAGASIE-WWWSARSAKKGNKLLEQESAAFIAEWNKE-RDALMARRTYPIKLLAHEVEE---ADVQLMQLVAAAEDAGVDLGAGGSGLGGGATRPKARSIQQDNMEYEEFKQPDTDGDNVISKTEFYQYIRKYLSLYPDTAEMDIPHFEDFDLNNDGVVSFDEWQMYL 225          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|397625411|gb|EJK67786.1| (hypothetical protein THAOC_11134 [Thalassiosira oceanica])

HSP 1 Score: 73.1738 bits (178), Expect = 7.215e-12
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 0
Query:  159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
            +LQ++Y EFKQPD +GDD+I+R EF  Y++ YL+  P  ++ DYP F++FD DGD  ++F E+
Sbjct:  128 NLQREYDEFKQPDTDGDDRISRTEFVSYVKNYLSNYPGLTEKDYPKFEDFDHDGDGYVSFQEY 190          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|223994983|ref|XP_002287175.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976291|gb|EED94618.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.9442 bits (180), Expect = 7.355e-12
Identity = 30/63 (47.62%), Postives = 48/63 (76.19%), Query Frame = 0
Query:  159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
            +LQ++Y EFKQPD++GDD+I+R EF+ Y++ YL+  P  ++ DYP F++FD D D  ++F E+
Sbjct:  171 ALQREYDEFKQPDVDGDDRISRTEFNMYVKNYLSNYPGLTEKDYPKFEDFDHDHDGYVSFQEY 233          
BLAST of EWM27554.1 vs. NCBI_GenBank
Match: gi|1072233733|gb|OEU18463.1| (hypothetical protein FRACYDRAFT_260404 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.1738 bits (178), Expect = 9.815e-12
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 0
Query:  159 SLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEW 221
            +LQ+DY EFKQPDL+ DD+I+R EF  Y++ YL+  P  ++ DYP F++FD DG+  ++F E+
Sbjct:  162 ALQRDYDEFKQPDLDSDDRISRAEFSMYVKDYLSNYPGLTEKDYPKFEDFDHDGNGFVSFEEY 224          
The following BLAST results are available for this feature:
BLAST of EWM27554.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109821|gb|EWM27554.1|0.000e+0100.00EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
gi|585109820|gb|EWM27553.1|0.000e+099.21EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
gi|585111824|gb|EWM29300.1|5.210e-2032.04EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
gi|219127112|ref|XP_002183787.1|1.394e-1434.93predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210522084|dbj|GAX19137.1|9.445e-1446.84hypothetical protein FisN_3Lh079 [Fistulifera sola... [more]
gi|1210525539|dbj|GAX15608.1|1.004e-1346.84hypothetical protein FisN_3Hh079 [Fistulifera sola... [more]
gi|298708691|emb|CBJ49188.1|4.326e-1330.77conserved unknown protein [Ectocarpus siliculosus][more]
gi|397625411|gb|EJK67786.1|7.215e-1249.21hypothetical protein THAOC_11134 [Thalassiosira oc... [more]
gi|223994983|ref|XP_002287175.1|7.355e-1247.62predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072233733|gb|OEU18463.1|9.815e-1249.21hypothetical protein FRACYDRAFT_260404 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3152rna3152Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications