EWM27556.1, cds3138 (CDS) Nannochloropsis gaditana

Overview
NameEWM27556.1
Unique Namecds3138
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:844173..844325 -
Alignment locationCM002460.1:843889..843969 -
Alignment locationCM002460.1:843471..843731 -
Alignment locationCM002460.1:842715..843308 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27556.1
Productinhibitor of growth protein 4
Orig transcript idgnl|cribi|Naga_100015g8.6372.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:844173..844325 -
CM002460.1supercontigCM002460.1:843889..843969 -
CM002460.1supercontigCM002460.1:843471..843731 -
CM002460.1supercontigCM002460.1:842715..843308 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019786Zinc_finger_PHD-type_CS
IPR028651ING_fam
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD
Homology
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|585109823|gb|EWM27556.1| (inhibitor of growth protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0
Query:    1 MSSSCSDGVADARLSAAGISAIYPASFVSRHLVPGAETYRQRLSVLRSIDKEVAKKRDEYWRKEDALVEMASKLLTSKDSNPEDLQAFLSSADFADLSAHQQDINDVRTQALRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQRKAQRQGKRRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKELAYQGAVAAPSAESAQEQADEEKKPSRADAQKSENRENEIKGANEGMAVHEGEDGKLIGEGGELSGASEKEEARNEEREESALPSAVADEAKD 362
            MSSSCSDGVADARLSAAGISAIYPASFVSRHLVPGAETYRQRLSVLRSIDKEVAKKRDEYWRKEDALVEMASKLLTSKDSNPEDLQAFLSSADFADLSAHQQDINDVRTQALRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQRKAQRQGKRRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKELAYQGAVAAPSAESAQEQADEEKKPSRADAQKSENRENEIKGANEGMAVHEGEDGKLIGEGGELSGASEKEEARNEEREESALPSAVADEAKD
Sbjct:    1 MSSSCSDGVADARLSAAGISAIYPASFVSRHLVPGAETYRQRLSVLRSIDKEVAKKRDEYWRKEDALVEMASKLLTSKDSNPEDLQAFLSSADFADLSAHQQDINDVRTQALRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQRKAQRQGKRRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKELAYQGAVAAPSAESAQEQADEEKKPSRADAQKSENRENEIKGANEGMAVHEGEDGKLIGEGGELSGASEKEEARNEEREESALPSAVADEAKD 362          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|1176091988|ref|XP_020616461.1| (inhibitor of growth protein 4-like [Orbicella faveolata])

HSP 1 Score: 123.25 bits (308), Expect = 1.993e-29
Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 0
Query:   83 EDLQAFLSSADFADLSAHQQDINDVRTQA-------LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAED--YSTLDPQILAIKRKEQRKAQRQG----KRRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            E+  A + S D A+ ++H + I +   ++       ++LA + Y+ +D  IR LD D+   E  +    A++  +S  + +    KR+ +   + +G    K++  E + +KKK++   G P+ L +  S+   +     D  VDPNEP YC C +VSYG+M+GCDN +C  EWFH  CVGL + P G W CP C  E++
Sbjct:   47 EEYMANVRSMDAANRTSHLKKIENAFVKSREYGDDKVQLAMQTYEMVDKHIRKLDADLARFESDLKEQHAKEAGFSDYESESPTPKRRSKSSGRSKGGGRRKQKDAEESARKKKKVESEG-PKSLAIAVSLLAPEVQV-LDMPVDPNEPTYCLCHQVSYGEMIGCDNTECPIEWFHFPCVGLTSKPKGKWYCPKCAQERK 244          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|678993865|gb|KFV99609.1| (Inhibitor of growth protein 5, partial [Eurypyga helias])

HSP 1 Score: 117.087 bits (292), Expect = 2.389e-27
Identity = 64/160 (40.00%), Postives = 84/160 (52.50%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMA-AAAAEDYSTLDPQILAIKRKEQRKAQRQGK-RRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +       D+     + L   R ++ K   +G+ RRA E    KKK+L  +G  E    + SV P       D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CV L   P G W CP C  EK+
Sbjct:   74 VQLAMQTYEMVDKHIRRLDADLARFEADLKDKLEGSDFENPGSRSLKKGRSQKDKKGSRGRGRRASEEDTPKKKKL--KGGSEFADTILSVHPSDVL---DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEKK 228          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|677242942|gb|KFP56411.1| (Inhibitor of growth protein 5, partial [Cariama cristata])

HSP 1 Score: 116.701 bits (291), Expect = 4.535e-27
Identity = 81/243 (33.33%), Postives = 117/243 (48.15%), Query Frame = 0
Query:   33 VPGAETY----RQRLSVLRSIDKEVAKKRDEYWRKEDALVEMASKLLTSKDSNPEDLQAFLSSADFADLSAHQQDINDVRTQALRLATEAYDKIDDSIRALDWDIGMLEPQMA-AAAAEDYSTLDPQILAIKRKEQRKAQRQGK-RRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            VPG E      ++   ++R +D+    K+ E     D+L   A  + + K+  PE+    L     A   +  ++ +D + Q   LA + Y+ +D  IR LD D+   E  +       D+ +   + L   R ++ K   +G+ RR  E    KKK+L  +G  E    + SV P       D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CV L   P G W CP C  EK+
Sbjct:    7 VPGIENLPCELQRNFQLMRELDQRTEDKKAEI----DSLA--AEYIESVKNMLPEERVEHLKKIQSA--YSKCKEYSDDKVQ---LAMQTYEMVDKHIRRLDADLARFEADLKDKLEGSDFESPGSRSLKKGRSQKDKKGSRGRGRRTSEEDTPKKKKL--KGGSEFADTILSVHPSDVL---DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEKK 233          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|847038621|ref|XP_012806692.1| (PREDICTED: inhibitor of growth protein 4 isoform X2 [Jaculus jaculus])

HSP 1 Score: 115.546 bits (288), Expect = 7.996e-27
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQR--KAQRQGKRRAREL--AVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +     E             +KE++  +A+ +GK    E   A QKK +L  R  PE      + G    +   D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CVGL   P G W CP C  E++
Sbjct:   56 VQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQMESSDYDSSSSKGRTQKEKKAARARSKGKNSDEEAPKATQKKLKLV-RTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERK 216          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|634837715|ref|XP_007935295.1| (PREDICTED: inhibitor of growth protein 4 isoform X4 [Orycteropus afer afer] >gi|655831294|ref|XP_008257961.1| PREDICTED: inhibitor of growth protein 4 isoform X2 [Oryctolagus cuniculus])

HSP 1 Score: 115.931 bits (289), Expect = 8.711e-27
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQR--KAQRQGKRRAREL--AVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +     E             +KE++  +A+ +GK    E   A QKK +L  R  PE      + G    +   D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CVGL   P G W CP C  E++
Sbjct:   83 VQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKGRTQKEKKAARARSKGKNSDEETPKAAQKKLKLV-RTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERK 243          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|507977951|ref|XP_004692942.1| (PREDICTED: inhibitor of growth protein 4 isoform X3 [Condylura cristata])

HSP 1 Score: 115.931 bits (289), Expect = 8.801e-27
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQR--KAQRQGKRRAREL--AVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +     E             +KE++  +A+ +GK    E   A QKK +L  R  PE      + G    +   D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CVGL   P G W CP C  E++
Sbjct:   83 VQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKGRTQKEKKAARARSKGKNSDEEAPKAAQKKLKLV-RSSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERK 243          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|505830432|ref|XP_004610512.1| (PREDICTED: inhibitor of growth protein 4 isoform X2 [Sorex araneus] >gi|545546580|ref|XP_005637288.1| PREDICTED: inhibitor of growth protein 4 isoform X4 [Canis lupus familiaris])

HSP 1 Score: 115.931 bits (289), Expect = 9.079e-27
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQR--KAQRQGKRRAREL--AVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +     E             +KE++  +A+ +GK    E   A QKK +L  R  PE      + G    +   D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CVGL   P G W CP C  E++
Sbjct:   83 VQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKGRTQKEKKAARARSKGKNSDEEAPKATQKKLKLV-RTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERK 243          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|505830434|ref|XP_004610513.1| (PREDICTED: inhibitor of growth protein 4 isoform X3 [Sorex araneus])

HSP 1 Score: 115.931 bits (289), Expect = 9.189e-27
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQR-----KAQRQGKRRARELAVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +     E            K + Q+     +A+ +GK    E     +K+L   G+P       + G    +   D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CVGL   P G W CP C  E++
Sbjct:   83 VQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKGKKSRTQKEKKAARARSKGKNSDEEAPKATQKKLKLYGMPS-----VTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERK 240          
BLAST of EWM27556.1 vs. NCBI_GenBank
Match: gi|148667379|gb|EDK99795.1| (mCG141463, isoform CRA_d [Mus musculus])

HSP 1 Score: 115.161 bits (287), Expect = 9.540e-27
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  112 LRLATEAYDKIDDSIRALDWDIGMLEPQMAAAAAEDYSTLDPQILAIKRKEQR--KAQRQGKRRAREL--AVQKKKRLGKRGLPEDLGLVASVGPGQGTTEGDDDVDPNEPVYCTCQRVSYGQMVGCDNEDCRFEWFHLDCVGLVAPPTGNWLCPDCCNEKE 269
            ++LA + Y+ +D  IR LD D+   E  +     E             +KE++  +A+ +GK    E   A QKK +L  R  PE      + G    +   D  VDPNEP YC C +VSYG+M+GCDN DC  EWFH  CVGL   P G W CP C  E++
Sbjct:   56 VQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKGRTQKEKKAARARSKGKNSDEEAPKAAQKKLKLV-RTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERK 216          
The following BLAST results are available for this feature:
BLAST of EWM27556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109823|gb|EWM27556.1|0.000e+0100.00inhibitor of growth protein 4 [Nannochloropsis gad... [more]
gi|1176091988|ref|XP_020616461.1|1.993e-2933.00inhibitor of growth protein 4-like [Orbicella fave... [more]
gi|678993865|gb|KFV99609.1|2.389e-2740.00Inhibitor of growth protein 5, partial [Eurypyga h... [more]
gi|677242942|gb|KFP56411.1|4.535e-2733.33Inhibitor of growth protein 5, partial [Cariama cr... [more]
gi|847038621|ref|XP_012806692.1|7.996e-2738.27PREDICTED: inhibitor of growth protein 4 isoform X... [more]
gi|634837715|ref|XP_007935295.1|8.711e-2738.27PREDICTED: inhibitor of growth protein 4 isoform X... [more]
gi|507977951|ref|XP_004692942.1|8.801e-2738.27PREDICTED: inhibitor of growth protein 4 isoform X... [more]
gi|505830432|ref|XP_004610512.1|9.079e-2738.27PREDICTED: inhibitor of growth protein 4 isoform X... [more]
gi|505830434|ref|XP_004610513.1|9.189e-2735.58PREDICTED: inhibitor of growth protein 4 isoform X... [more]
gi|148667379|gb|EDK99795.1|9.540e-2738.27mCG141463, isoform CRA_d [Mus musculus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3146rna3146Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications