EWM27580.1, cds3127 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|585109847|gb|EWM27580.1| (anaphase-promoting complex subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 1901.72 bits (4925), Expect = 0.000e+0 Identity = 940/940 (100.00%), Postives = 940/940 (100.00%), Query Frame = 0
Query: 1 MQSQHEGMKSARMQPPTFHSQAFSVLHEKSIAVSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAASKRLTFRHSTKHTRMLLSFLRKPVAASAPTDSEDAPGEKRAAGPTGNTEAVIAVHISSYFKDQPLPMPPSRIMTTSAPARSPGSCDAVDGGAKEGAKGLASVSLRTQVKWVLARFEAVFRRPMEAITDRLSSPYVLLLSQGPLASPPSLYAPARSDPSRILMAAVSSGGARTIVLSIEVGALASRMRLGAETPNGIPHVEVTGLSLDAPAGFSFQQAALYGSRPHIPSSNPESIVLLVRENVQPFEIRTPAELWKLPLTSLLTHLNPVDKEGGARACLLDGQGARSLLPWEMVSNVRTRQVAAVAPRKLALAVTGCRGIACVTSESNFLLLADLEEDEDEDEEEEGNEGEGQGVGRVTRLQEQLDGLTNEVMQVESTMRMEIVQGEENEDAKSAC 940
MQSQHEGMKSARMQPPTFHSQAFSVLHEKSIAVSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAASKRLTFRHSTKHTRMLLSFLRKPVAASAPTDSEDAPGEKRAAGPTGNTEAVIAVHISSYFKDQPLPMPPSRIMTTSAPARSPGSCDAVDGGAKEGAKGLASVSLRTQVKWVLARFEAVFRRPMEAITDRLSSPYVLLLSQGPLASPPSLYAPARSDPSRILMAAVSSGGARTIVLSIEVGALASRMRLGAETPNGIPHVEVTGLSLDAPAGFSFQQAALYGSRPHIPSSNPESIVLLVRENVQPFEIRTPAELWKLPLTSLLTHLNPVDKEGGARACLLDGQGARSLLPWEMVSNVRTRQVAAVAPRKLALAVTGCRGIACVTSESNFLLLADLEEDEDEDEEEEGNEGEGQGVGRVTRLQEQLDGLTNEVMQVESTMRMEIVQGEENEDAKSAC
Sbjct: 1 MQSQHEGMKSARMQPPTFHSQAFSVLHEKSIAVSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAASKRLTFRHSTKHTRMLLSFLRKPVAASAPTDSEDAPGEKRAAGPTGNTEAVIAVHISSYFKDQPLPMPPSRIMTTSAPARSPGSCDAVDGGAKEGAKGLASVSLRTQVKWVLARFEAVFRRPMEAITDRLSSPYVLLLSQGPLASPPSLYAPARSDPSRILMAAVSSGGARTIVLSIEVGALASRMRLGAETPNGIPHVEVTGLSLDAPAGFSFQQAALYGSRPHIPSSNPESIVLLVRENVQPFEIRTPAELWKLPLTSLLTHLNPVDKEGGARACLLDGQGARSLLPWEMVSNVRTRQVAAVAPRKLALAVTGCRGIACVTSESNFLLLADLEEDEDEDEEEEGNEGEGQGVGRVTRLQEQLDGLTNEVMQVESTMRMEIVQGEENEDAKSAC 940
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|553196075|ref|XP_005856263.1| (anaphase promoting complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422292796|gb|EKU20098.1| anaphase promoting complex subunit 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 291.967 bits (746), Expect = 3.774e-90 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 40 PKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFA 181
PKMDL+ALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPAS VQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFA
Sbjct: 1 PKMDLIALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASAVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFA 142
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|298711419|emb|CBJ32560.1| (Putative subunit of the Promoting Anaphase Complex [Ectocarpus siliculosus]) HSP 1 Score: 154.066 bits (388), Expect = 1.173e-34 Identity = 178/677 (26.29%), Postives = 278/677 (41.06%), Query Frame = 0
Query: 23 FSVLHEKSIAVSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQ-REPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPLGLQSGSFAVPRHVKQGSIEAKLAAGVASL--------DVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPS-ILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLL--RDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSA------LSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPT--------GTEEPPAASKRLTFRHSTKHTRMLLSFLRKPVAASAPTDSEDAPGEKRAAG--PTGNTEAVIAVHISSYFKD----QPLPMPPSRIMTTSAPARSPGSCDAVDGGAKEGAKGLASVSLRTQVKWVLARFEAVFRRP 667
FS++HEK + V +CP MDL+A L DG + V RT+ WQR TL + + + + ++WSP+G LA+G+ G I VE G A + + AL W QQ R S D E + Y DR L +G+ + ++ G L VL + G +++ G ++++ LR PT A GR V SP RQ R P A + S + +D P L P L++ S DLS + + G V + V +LW RH+L+PL ++ A ++ L+ ++ + W +++ L+ KL L LL Y + +A++ + V G A AL+Q+LS + Q + R+ K +D VE +LR V+ + + FRA L L + + + A +K L VK E+TLR+VQ +R ++ +LWL + + P GTEE S LT +S +L+ LR+P+ P+D AAG P E++I + D + L PP+ P P + ++ LAS +LR QV+ + A E VF+ P
Sbjct: 8 FSIIHEKLLHCRLVCMCPTMDLVASLHVDGQLSVHRTMGWQRSFTLTQEDMGN-RTFSCVTWSPNGKTLAVGYTDGTIQLFGVETGAEE-----CSLAFHEGRSLAALTWVAQQPRHGTARSRADEEADQLAEVAAAYADRCEHVLGPCDQLPGANGAPGGGVAGRSSEYSSQADDGFMLLQGMKERPVSVLASADSAGVVVLSICGAYRLITIDLRAHRKPTKGKGRASGGGR---VDSP---RQRRFRRSPGQDGAGFSGLTESEVDID---------GTGPALRPLQLTL-----SADLSVLTALVEFD----GQVELIQVDLPLLWRQRHELKPLAMQFTAFRAVIGRLVVSVPRLPQLWKGTLQALETKLGNLEDLLPRFGYDKDITAKDEFIHLVTCGYASAALAQFLSTGLTHVQ---LARMRKAVDTGTGQVEAMLRGDVSLLARTLLFRACDLHRLVIACTGGGGVDGDGGLGLGQAPVEAFLKDCEMLCVKVEQTLRDVQTSRSRLRFLLLWL----EQMSPVVTDSNSADGTEEHEPPSPCLTLANS------VLTILREPL----PSDKPSLSSRSTAAGASPRSRVESMIGTRVPGLAVDENPVESLEGPPA----ARGPLTGPNQKNRFVVLPEDPV--LASRTLRGQVQRLGASVEEVFQAP 631
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1002238088|ref|XP_015623248.1| (PREDICTED: anaphase-promoting complex subunit 4 isoform X1 [Oryza sativa Japonica Group]) HSP 1 Score: 119.783 bits (299), Expect = 5.816e-24 Identity = 124/523 (23.71%), Postives = 218/523 (41.68%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAAS----PTLSPPAL-SVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAAS 546
+ E P+ DLLA++ TD S VVL +WQRL T+ K +T++ WSPDG ++ALG G + DVE G+ R+ A + L W E +S D + L+ Y DR A F+ P + GL SG + + SI+ +A ++L + +GG I G+ PV + N+ P + + + S L S S + + + L P L + +L+ S +S G+ L + T++ + +++L ++ + +++ LV + +L M +QW+ ++ + K L L+ + E+S+ + +S + PAL Q+L + E + R+ K +D + ++ E + E+I+FR +LRGLAR +Q +GL + + + G L V+ E R + F W+L ++ L T++ PAA+
Sbjct: 31 IKMAEWNPEKDLLAMV-TDDSKVVLHRFNWQRLWTISPG-----KCITSICWSPDGKIVALGTEDGLVLLHDVENGKMLRRIKSHDVA------IVCLNW----AEDELLSRTDKDGLLS------YEDRTARFFPPAPVIPRIGGLSSGDTGLSDE-NEESIQEFSSASCQRFNILCSGDKGGCICFSIFGIFPV-----------------------------------GKININEVPIHFQSSGNKTSYRLQDASISKVCLSGNLHQLVLLCPGKLIDIDNLSHSNHIST-------------GLHCLHLDTSIFFNRKNELHQISQQASSIQDLVEVVRSSLSMMAKQWSSAMNLFNEKFSALPSLIAAHGMESSSEDEFMSLLFGTRTSPALHQFLVSSLGEAALK---RIAKAVDSAGRELRVVVSEHLQPAVEIISFRLAELRGLARWRSRFQNVGLDEKLIYGVTEKIGMLVVQVERFSRVAATVLYLFQNFFSWVLKCVKILLSEPTDQVPAAN 479
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1002238090|ref|XP_015623249.1| (PREDICTED: anaphase-promoting complex subunit 4 isoform X2 [Oryza sativa Japonica Group]) HSP 1 Score: 119.398 bits (298), Expect = 6.328e-24 Identity = 124/523 (23.71%), Postives = 218/523 (41.68%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAAS----PTLSPPAL-SVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAAS 546
+ E P+ DLLA++ TD S VVL +WQRL T+ K +T++ WSPDG ++ALG G + DVE G+ R+ A + L W E +S D + L+ Y DR A F+ P + GL SG + + SI+ +A ++L + +GG I G+ PV + N+ P + + + S L S S + + + L P L + +L+ S +S G+ L + T++ + +++L ++ + +++ LV + +L M +QW+ ++ + K L L+ + E+S+ + +S + PAL Q+L + E + R+ K +D + ++ E + E+I+FR +LRGLAR +Q +GL + + + G L V+ E R + F W+L ++ L T++ PAA+
Sbjct: 31 IKMAEWNPEKDLLAMV-TDDSKVVLHRFNWQRLWTISPG-----KCITSICWSPDGKIVALGTEDGLVLLHDVENGKMLRRIKSHDVA------IVCLNW----AEDELLSRTDKDGLLS------YEDRTARFFPPAPVIPRIGGLSSGDTGLSDE-NEESIQEFSSASCQRFNILCSGDKGGCICFSIFGIFPV-----------------------------------GKININEVPIHFQSSGNKTSYRLQDASISKVCLSGNLHQLVLLCPGKLIDIDNLSHSNHIST-------------GLHCLHLDTSIFFNRKNELHQISQQASSIQDLVEVVRSSLSMMAKQWSSAMNLFNEKFSALPSLIAAHGMESSSEDEFMSLLFGTRTSPALHQFLVSSLGEAALK---RIAKAVDSAGRELRVVVSEHLQPAVEIISFRLAELRGLARWRSRFQNVGLDEKLIYGVTEKIGMLVVQVERFSRVAATVLYLFQNFFSWVLKCVKILLSEPTDQVPAAN 479
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1142692091|gb|AQK56017.1| (Anaphase-promoting complex subunit 4 [Zea mays]) HSP 1 Score: 118.627 bits (296), Expect = 7.958e-24 Identity = 120/523 (22.94%), Postives = 221/523 (42.26%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTS-PASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAASKRLT 550
+ E P+ DLLA++ TD S V+L +WQRL T+ K +T++ WSPDG ++ALG G I DVE G+ R A + +L W E +S D ++ L+ Y DR F+ P + GL+SG + ++ E +A ++L + + G + G+ PV G+ I +T P ++ +R + Q + S L Q F+ L L + +LS G+ L + T++ + +++L ++ + +++ +V + ++ + +QW+ ++ K L L+ + E+S+ + LS + PAL +L+ + E + R+ K +D + G++ E + E+I+FR +LRGL+R +Q +GL + + + ++ G L V+ E R + F W+L +++ L T++ PAA+ L
Sbjct: 31 IKMAEWNPEKDLLAMV-TDDSKVLLHRFNWQRLWTISPG-----KCITSICWSPDGKIIALGTEDGLILLHDVENGKMLRTTKSHDVA------IVSLNW----AEDDPLSKSDKDEFLS------YEDRTTRFFPPPPVMPRIGGLRSGDTGLADENEEAIPEFS-SASCQRFNILCSGGKDGCVCFSVFGIFPV---------------------GK-INITKIPINVGSSRKSYQLQDASVSKVS------LSRNLQKFV-----------ILCFGKLVDTDNLS--------DSCENSGLHCLYLDTSIFFNRKNELHQVSQQASSIQDMVEVVRASVSLISKQWSNAMSLFHEKFSALPNLISTHGVESSSEDEFLSLLFGTRTSPALHHFLASSLGEA---GLKRIAKAVDSAGRDIRGIITEHLQPAVEIISFRLAELRGLSRWRSRFQTIGLDGNLIDGVTESIGMLVVQVERFSRVAATVVYLFQNFFAWVLKSVRILLNEPTDQVPAANSELV 480
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1002842731|ref|XP_015688990.1| (PREDICTED: anaphase-promoting complex subunit 4 isoform X1 [Oryza brachyantha]) HSP 1 Score: 118.627 bits (296), Expect = 1.257e-23 Identity = 122/519 (23.51%), Postives = 217/519 (41.81%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPAL-SVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAAS 546
+ E P+ DLLA++ TD S V+L +WQRL T+ K +T++ WSPDG ++ALG G + DVE G+ R+ + + L W + EP + + +D Y DR F+ P + GL SG + + SI+ +A ++L + +GG I G+ PV + + D P +G T + AS L + Q L L P L + +L+ S +S G+ L + T++ + +++L ++ + +++ LV + ++ M +QW+ ++ + K L L+ + E+S+ + +S + PAL Q+L + E + R+ K +D + ++ E + E+I+FR +LRGLAR +Q +GL + + + G L V+ E R + F W+L ++ L T++ PAA+
Sbjct: 31 IKMAEWNPEKDLLAMV-TDDSKVILHRFNWQRLWTISPG-----KCITSICWSPDGKIVALGTEDGLVLLHDVENGKMLRR------IKSHDVAIVCLNW--AEDEPLSRTDKD--------GLLSYEDRTTRFFPPAPVIPRIGGLNSGDTGLADE-NEESIQEFSSASCHRFNILCSGDKGGCICFSIFGIFPVGKININD------VPIHVQSSG------------------NKTCYQLQDASISKVCLSGNLHQLVL-------LCPGKLVDIDNLSLSNHISV-------------GLHCLHLDTSIFFNRKNELHQISQQASSIQDLVEVVRASISMMAKQWSSAMNLFNEKFSALPSLIAAHGMESSSEDEFMSLLFGTRTSPALHQFLVSSLGEAALK---RIAKAVDSAGRELRVVVSEHLQPAVEIISFRLAELRGLARWRSRFQNIGLDEKLIDGVTEKIGMLVVQVERFSRVAATVLYLFQNFFSWVLKCVKILLSEPTDQVPAAN 479
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1142692089|gb|AQK56015.1| (Anaphase-promoting complex subunit 4 [Zea mays]) HSP 1 Score: 118.627 bits (296), Expect = 1.416e-23 Identity = 120/523 (22.94%), Postives = 221/523 (42.26%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTS-PASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAASKRLT 550
+ E P+ DLLA++ TD S V+L +WQRL T+ K +T++ WSPDG ++ALG G I DVE G+ R A + +L W E +S D ++ L+ Y DR F+ P + GL+SG + ++ E +A ++L + + G + G+ PV G+ I +T P ++ +R + Q + S L Q F+ L L + +LS G+ L + T++ + +++L ++ + +++ +V + ++ + +QW+ ++ K L L+ + E+S+ + LS + PAL +L+ + E + R+ K +D + G++ E + E+I+FR +LRGL+R +Q +GL + + + ++ G L V+ E R + F W+L +++ L T++ PAA+ L
Sbjct: 31 IKMAEWNPEKDLLAMV-TDDSKVLLHRFNWQRLWTISPG-----KCITSICWSPDGKIIALGTEDGLILLHDVENGKMLRTTKSHDVA------IVSLNW----AEDDPLSKSDKDEFLS------YEDRTTRFFPPPPVMPRIGGLRSGDTGLADENEEAIPEFS-SASCQRFNILCSGGKDGCVCFSVFGIFPV---------------------GK-INITKIPINVGSSRKSYQLQDASVSKVS------LSRNLQKFV-----------ILCFGKLVDTDNLS--------DSCENSGLHCLYLDTSIFFNRKNELHQVSQQASSIQDMVEVVRASVSLISKQWSNAMSLFHEKFSALPNLISTHGVESSSEDEFLSLLFGTRTSPALHHFLASSLGEA---GLKRIAKAVDSAGRDIRGIITEHLQPAVEIISFRLAELRGLSRWRSRFQTIGLDGNLIDGVTESIGMLVVQVERFSRVAATVVYLFQNFFAWVLKSVRILLNEPTDQVPAANSELV 480
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1142692097|gb|AQK56023.1| (Anaphase-promoting complex subunit 4 [Zea mays]) HSP 1 Score: 118.242 bits (295), Expect = 1.514e-23 Identity = 120/523 (22.94%), Postives = 221/523 (42.26%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTS-PASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPALSVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAASKRLT 550
+ E P+ DLLA++ TD S V+L +WQRL T+ K +T++ WSPDG ++ALG G I DVE G+ R A + +L W E +S D ++ L+ Y DR F+ P + GL+SG + ++ E +A ++L + + G + G+ PV G+ I +T P ++ +R + Q + S L Q F+ L L + +LS G+ L + T++ + +++L ++ + +++ +V + ++ + +QW+ ++ K L L+ + E+S+ + LS + PAL +L+ + E + R+ K +D + G++ E + E+I+FR +LRGL+R +Q +GL + + + ++ G L V+ E R + F W+L +++ L T++ PAA+ L
Sbjct: 31 IKMAEWNPEKDLLAMV-TDDSKVLLHRFNWQRLWTISPG-----KCITSICWSPDGKIIALGTEDGLILLHDVENGKMLRTTKSHDVA------IVSLNW----AEDDPLSKSDKDEFLS------YEDRTTRFFPPPPVMPRIGGLRSGDTGLADENEEAIPEFS-SASCQRFNILCSGGKDGCVCFSVFGIFPV---------------------GK-INITKIPINVGSSRKSYQLQDASVSKVS------LSRNLQKFV-----------ILCFGKLVDTDNLS--------DSCENSGLHCLYLDTSIFFNRKNELHQVSQQASSIQDMVEVVRASVSLISKQWSNAMSLFHEKFSALPNLISTHGVESSSEDEFLSLLFGTRTSPALHHFLASSLGEA---GLKRIAKAVDSAGRDIRGIITEHLQPAVEIISFRLAELRGLSRWRSRFQTIGLDGNLIDGVTESIGMLVVQVERFSRVAATVVYLFQNFFAWVLKSVRILLNEPTDQVPAANSELV 480
BLAST of EWM27580.1 vs. NCBI_GenBank
Match: gi|1002842733|ref|XP_015688991.1| (PREDICTED: anaphase-promoting complex subunit 4 isoform X2 [Oryza brachyantha]) HSP 1 Score: 118.242 bits (295), Expect = 1.674e-23 Identity = 122/519 (23.51%), Postives = 217/519 (41.81%), Query Frame = 0
Query: 33 VSKVELCPKMDLLALLRTDGSVVVLRTISWQRLNTLPAATLQDEKRVTAMSWSPDGNVLALGHAQGAISFLDVEKGERARQPLGARPASTVQQGVEALQWFTQQREPATMSSEDWEKNLTQAAGKYYLDRDAVFWEELPPL----GLQSGSFAVPRHVKQGSIEAKLAAGVASLDVLVACFQGGHILVFSSGLLPVVSLRLRDFFPPTPAPSLADENGRHIGVTSPASIRQARTNVQPTPSPAKPASSPPSILLDHPSQSFLPRAASPTLSPPAL-SVQSLAASRDLSAMVFTIAAGEGSRGGVSTLVVPTAVLWTHRHQLRPLTVELAAVSGLVSHLLEALDMAERQWNESVRTLDIKLELLNGLLRDYACEASAREALLSFVLSGVACPALSQYLSQNGSEPQQQNMFRLLKTMDDKIAGVEGLLREQVARVGEMIAFRAVKLRGLARSGPDYQALGLSTSALSALIKAAGDLSVKAEETLREVQRARQNIKVFVLWLLDTMQHLPPTGTEEPPAAS 546
+ E P+ DLLA++ TD S V+L +WQRL T+ K +T++ WSPDG ++ALG G + DVE G+ R+ + + L W + EP + + +D Y DR F+ P + GL SG + + SI+ +A ++L + +GG I G+ PV + + D P +G T + AS L + Q L L P L + +L+ S +S G+ L + T++ + +++L ++ + +++ LV + ++ M +QW+ ++ + K L L+ + E+S+ + +S + PAL Q+L + E + R+ K +D + ++ E + E+I+FR +LRGLAR +Q +GL + + + G L V+ E R + F W+L ++ L T++ PAA+
Sbjct: 25 IKMAEWNPEKDLLAMV-TDDSKVILHRFNWQRLWTISPG-----KCITSICWSPDGKIVALGTEDGLVLLHDVENGKMLRR------IKSHDVAIVCLNW--AEDEPLSRTDKD--------GLLSYEDRTTRFFPPAPVIPRIGGLNSGDTGLADE-NEESIQEFSSASCHRFNILCSGDKGGCICFSIFGIFPVGKININD------VPIHVQSSG------------------NKTCYQLQDASISKVCLSGNLHQLVL-------LCPGKLVDIDNLSLSNHISV-------------GLHCLHLDTSIFFNRKNELHQISQQASSIQDLVEVVRASISMMAKQWSSAMNLFNEKFSALPSLIAAHGMESSSEDEFMSLLFGTRTSPALHQFLVSSLGEAALK---RIAKAVDSAGRELRVVVSEHLQPAVEIISFRLAELRGLARWRSRFQNIGLDEKLIDGVTEKIGMLVVQVERFSRVAATVLYLFQNFFSWVLKCVKILLSEPTDQVPAAN 473 The following BLAST results are available for this feature:
BLAST of EWM27580.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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