EWM30389.1, cds308 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|585113049|gb|EWM30389.1| (rab family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0 Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query: 1 MESNPSGDGPLRIVVLTPFLVVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGVEDLDWTRGRGRLGVAAELLRNPRGPSILFIGIRGIVALSLSTSLTSVSPNKGIRWDVRSMCDMRRAQHSESRADMSDRFYQYLSETESVYGCKMLARDMRPLFNARRISENRQRIK 374
MESNPSGDGPLRIVVLTPFLVVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGVEDLDWTRGRGRLGVAAELLRNPRGPSILFIGIRGIVALSLSTSLTSVSPNKGIRWDVRSMCDMRRAQHSESRADMSDRFYQYLSETESVYGCKMLARDMRPLFNARRISENRQRIK
Sbjct: 1 MESNPSGDGPLRIVVLTPFLVVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGVEDLDWTRGRGRLGVAAELLRNPRGPSILFIGIRGIVALSLSTSLTSVSPNKGIRWDVRSMCDMRRAQHSESRADMSDRFYQYLSETESVYGCKMLARDMRPLFNARRISENRQRIK 374
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|553182506|ref|XP_005853740.1| (rab18 -family small gtpase, partial [Nannochloropsis gaditana CCMP526] >gi|422295322|gb|EKU22621.1| rab18 -family small gtpase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 489.574 bits (1259), Expect = 1.287e-172 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query: 21 VVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG 257
VVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG
Sbjct: 2 VVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG 238
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|669149436|ref|XP_008610280.1| (rab family, other [Saprolegnia diclina VS20] >gi|530737932|gb|EQC36174.1| rab family, other [Saprolegnia diclina VS20]) HSP 1 Score: 322.398 bits (825), Expect = 5.271e-107 Identity = 155/209 (74.16%), Postives = 179/209 (85.65%), Query Frame = 0
Query: 46 QKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGR--PRVNLQAD 252
Q S R ++M +E + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKM++VD KRIKMTIWDTAGQERFRTLTSSYYRGAQG+ILVYDV R+E+FENL WLQEVEVYS GR++VK+LVGNK+DKER+V R+E EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LL NTAP +VNL AD
Sbjct: 8 QSVQSCRLRRTMDAQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGVILVYDVARKETFENLGTWLQEVEVYSPSNGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSAD 216
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|813182197|ref|XP_012206169.1| (hypothetical protein SPRG_11899 [Saprolegnia parasitica CBS 223.65] >gi|641528852|gb|KDO23052.1| hypothetical protein SPRG_11899 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 321.242 bits (822), Expect = 9.260e-107 Identity = 155/201 (77.11%), Postives = 175/201 (87.06%), Query Frame = 0
Query: 57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGR--PRVNLQADAAA 255
M +E + YDHLFKLLL+GDAGVGKSS+LLRFTDD FDDH QSTIGVDFKVKM++VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDV R+E+FENL WLQEVEVYS GR++VK+LVGNK+DKER+V R+E EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LL NTAP +VNL AD A
Sbjct: 1 MDAQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSADKYA 201
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|1173960482|gb|OQS06605.1| (Rab18 family GTPase [Thraustotheca clavata]) HSP 1 Score: 318.546 bits (815), Expect = 9.526e-106 Identity = 155/197 (78.68%), Postives = 173/197 (87.82%), Query Frame = 0
Query: 61 EPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGR--PRVNLQADAAA 255
E + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKMI VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RRE+FENL+ WLQEVEVYS GR++VK+LVGNK+DKER+V R+E EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LLTNTAP RV L AD A
Sbjct: 5 EVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRETFENLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVARKEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLTNTAPRTRAKRVELSADKYA 201
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|298712751|emb|CBJ33348.1| (Rab18, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 318.161 bits (814), Expect = 1.721e-105 Identity = 150/190 (78.95%), Postives = 168/190 (88.42%), Query Frame = 0
Query: 57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR 246
M R+ EPYDHLFKLLL+GDA VGKSSI+LRFTDD FDDH QSTIGVDFKVKM++ KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R E+F+NL+ WL+EVE Y G GRE+VK+LVGNKVDKER+V R +AE +ARSKGMLFLEASAKT+ G++QVF EVVQKILDNPSLL NTAPGRPR
Sbjct: 1 MTTRQAEPYDHLFKLLLVGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPR 190
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|1173936691|gb|OQR87589.1| (Rab18 family GTPase [Achlya hypogyna]) HSP 1 Score: 316.62 bits (810), Expect = 6.816e-105 Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 0
Query: 57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAP-GRPR-VNLQADAAA 255
M +E + YDHLFKLLL+GDAGVGKSS+LLRFTDD FDDH QSTIGVDFKVKM+ VD KRIKMTIWDTAGQERFRTLTSSYYRGAQG++LVYDV RRE+FENL WLQEVE Y+ G GRE+VK+LVGNK+DKER V R++ EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LL NTAP R R V+L AD A
Sbjct: 1 MDQQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTDDTFDDHLQSTIGVDFKVKMMTVDEKRIKMTIWDTAGQERFRTLTSSYYRGAQGVVLVYDVARRETFENLGTWLQEVEAYTPGNGREVVKLLVGNKIDKERAVLRKDGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRARKVDLSADKYA 201
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|673037922|ref|XP_008872922.1| (hypothetical protein H310_08804 [Aphanomyces invadans] >gi|574471718|gb|ETV98725.1| hypothetical protein H310_08804 [Aphanomyces invadans]) HSP 1 Score: 315.464 bits (807), Expect = 3.016e-104 Identity = 149/195 (76.41%), Postives = 174/195 (89.23%), Query Frame = 0
Query: 50 SRRYLKSMAVREP--EPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAP 242
+R+ ++ ++ EP + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKMI VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RR++F NL+ WLQEVEVYS GR++VK+LVGNK+DKER+V R E EAWARSKGMLF+E+SAKT+TGI+QVF EVVQKILDNP+LL+NTAP
Sbjct: 9 TRQNARTASMAEPGVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRREGEAWARSKGMLFVESSAKTKTGIQQVFNEVVQKILDNPTLLSNTAP 203
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|698798496|ref|XP_009832277.1| (hypothetical protein H257_08181 [Aphanomyces astaci] >gi|574112448|gb|ETV77940.1| hypothetical protein H257_08181 [Aphanomyces astaci]) HSP 1 Score: 314.694 bits (805), Expect = 3.114e-104 Identity = 149/186 (80.11%), Postives = 167/186 (89.78%), Query Frame = 0
Query: 57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAP 242
MA + + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKMI VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RR++F NL+ WLQEVEVYS GR++VK+LVGNK+DKER V R E EAWARSKGMLF+E+SAKT+TGI+QVF EVVQKILDNPSLL+NTAP
Sbjct: 1 MAEQGVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERAVSRREGEAWARSKGMLFVESSAKTKTGIQQVFNEVVQKILDNPSLLSNTAP 186
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|301100814|ref|XP_002899496.1| (Rab18 family GTPase, putative [Phytophthora infestans T30-4] >gi|262103804|gb|EEY61856.1| Rab18 family GTPase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 309.301 bits (791), Expect = 3.250e-102 Identity = 149/195 (76.41%), Postives = 171/195 (87.69%), Query Frame = 0
Query: 63 EPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG 257
+ YDHLFKLLLIGDAGVGKSS+LLRFTDD FDD+ QSTIGVDFKVKM++VD K+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RR++FENL+ WLQEVEVYS GGR++VK+LVGNK+DKER+V R EAE WARSKGMLF+E+SAKT+ GI+QVF EVVQKIL+NP+LL+NTAP L A A G
Sbjct: 2 DGYDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDAKAEKSG 196 The following BLAST results are available for this feature:
BLAST of EWM30389.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|