EWM30389.1, cds308 (CDS) Nannochloropsis gaditana

Overview
NameEWM30389.1
Unique Namecds308
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:762284..762343 +
Alignment locationCM002455.1:762461..762648 +
Alignment locationCM002455.1:762800..762990 +
Alignment locationCM002455.1:763105..763435 +
Alignment locationCM002455.1:763493..763581 +
Alignment locationCM002455.1:763657..763727 +
Alignment locationCM002455.1:763811..764005 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30389.1
Productrab family gtpase
Orig transcript idgnl|cribi|Naga_100026g7.10643.mrna
GeneRab18
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:762284..762343 +
CM002455.1supercontigCM002455.1:762461..762648 +
CM002455.1supercontigCM002455.1:762800..762990 +
CM002455.1supercontigCM002455.1:763105..763435 +
CM002455.1supercontigCM002455.1:763493..763581 +
CM002455.1supercontigCM002455.1:763657..763727 +
CM002455.1supercontigCM002455.1:763811..764005 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0007165signal transduction
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR003578Small_GTPase_Rho
IPR002041Ran_GTPase
IPR020849Small_GTPase_Ras
IPR003579Small_GTPase_Rab_type
IPR001806Small_GTPase
Homology
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|585113049|gb|EWM30389.1| (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query:    1 MESNPSGDGPLRIVVLTPFLVVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGVEDLDWTRGRGRLGVAAELLRNPRGPSILFIGIRGIVALSLSTSLTSVSPNKGIRWDVRSMCDMRRAQHSESRADMSDRFYQYLSETESVYGCKMLARDMRPLFNARRISENRQRIK 374
            MESNPSGDGPLRIVVLTPFLVVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGVEDLDWTRGRGRLGVAAELLRNPRGPSILFIGIRGIVALSLSTSLTSVSPNKGIRWDVRSMCDMRRAQHSESRADMSDRFYQYLSETESVYGCKMLARDMRPLFNARRISENRQRIK
Sbjct:    1 MESNPSGDGPLRIVVLTPFLVVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGVEDLDWTRGRGRLGVAAELLRNPRGPSILFIGIRGIVALSLSTSLTSVSPNKGIRWDVRSMCDMRRAQHSESRADMSDRFYQYLSETESVYGCKMLARDMRPLFNARRISENRQRIK 374          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|553182506|ref|XP_005853740.1| (rab18 -family small gtpase, partial [Nannochloropsis gaditana CCMP526] >gi|422295322|gb|EKU22621.1| rab18 -family small gtpase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 489.574 bits (1259), Expect = 1.287e-172
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:   21 VVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG 257
            VVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG
Sbjct:    2 VVRFFSSYENVHLFASSPLLQFEYNQKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG 238          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|669149436|ref|XP_008610280.1| (rab family, other [Saprolegnia diclina VS20] >gi|530737932|gb|EQC36174.1| rab family, other [Saprolegnia diclina VS20])

HSP 1 Score: 322.398 bits (825), Expect = 5.271e-107
Identity = 155/209 (74.16%), Postives = 179/209 (85.65%), Query Frame = 0
Query:   46 QKSSSRRYLKSMAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGR--PRVNLQAD 252
            Q   S R  ++M  +E + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKM++VD KRIKMTIWDTAGQERFRTLTSSYYRGAQG+ILVYDV R+E+FENL  WLQEVEVYS   GR++VK+LVGNK+DKER+V R+E EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LL NTAP     +VNL AD
Sbjct:    8 QSVQSCRLRRTMDAQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGVILVYDVARKETFENLGTWLQEVEVYSPSNGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSAD 216          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|813182197|ref|XP_012206169.1| (hypothetical protein SPRG_11899 [Saprolegnia parasitica CBS 223.65] >gi|641528852|gb|KDO23052.1| hypothetical protein SPRG_11899 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 321.242 bits (822), Expect = 9.260e-107
Identity = 155/201 (77.11%), Postives = 175/201 (87.06%), Query Frame = 0
Query:   57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGR--PRVNLQADAAA 255
            M  +E + YDHLFKLLL+GDAGVGKSS+LLRFTDD FDDH QSTIGVDFKVKM++VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDV R+E+FENL  WLQEVEVYS   GR++VK+LVGNK+DKER+V R+E EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LL NTAP     +VNL AD  A
Sbjct:    1 MDAQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSADKYA 201          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|1173960482|gb|OQS06605.1| (Rab18 family GTPase [Thraustotheca clavata])

HSP 1 Score: 318.546 bits (815), Expect = 9.526e-106
Identity = 155/197 (78.68%), Postives = 173/197 (87.82%), Query Frame = 0
Query:   61 EPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGR--PRVNLQADAAA 255
            E + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKMI VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RRE+FENL+ WLQEVEVYS   GR++VK+LVGNK+DKER+V R+E EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LLTNTAP     RV L AD  A
Sbjct:    5 EVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRETFENLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVARKEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLTNTAPRTRAKRVELSADKYA 201          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|298712751|emb|CBJ33348.1| (Rab18, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 318.161 bits (814), Expect = 1.721e-105
Identity = 150/190 (78.95%), Postives = 168/190 (88.42%), Query Frame = 0
Query:   57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR 246
            M  R+ EPYDHLFKLLL+GDA VGKSSI+LRFTDD FDDH QSTIGVDFKVKM++   KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R E+F+NL+ WL+EVE Y  G GRE+VK+LVGNKVDKER+V R +AE +ARSKGMLFLEASAKT+ G++QVF EVVQKILDNPSLL NTAPGRPR
Sbjct:    1 MTTRQAEPYDHLFKLLLVGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPR 190          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|1173936691|gb|OQR87589.1| (Rab18 family GTPase [Achlya hypogyna])

HSP 1 Score: 316.62 bits (810), Expect = 6.816e-105
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 0
Query:   57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAP-GRPR-VNLQADAAA 255
            M  +E + YDHLFKLLL+GDAGVGKSS+LLRFTDD FDDH QSTIGVDFKVKM+ VD KRIKMTIWDTAGQERFRTLTSSYYRGAQG++LVYDV RRE+FENL  WLQEVE Y+ G GRE+VK+LVGNK+DKER V R++ EAWARSKGMLF+E+SAKT+ GI+QVF EVVQKILDNP+LL NTAP  R R V+L AD  A
Sbjct:    1 MDQQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTDDTFDDHLQSTIGVDFKVKMMTVDEKRIKMTIWDTAGQERFRTLTSSYYRGAQGVVLVYDVARRETFENLGTWLQEVEAYTPGNGREVVKLLVGNKIDKERAVLRKDGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRARKVDLSADKYA 201          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|673037922|ref|XP_008872922.1| (hypothetical protein H310_08804 [Aphanomyces invadans] >gi|574471718|gb|ETV98725.1| hypothetical protein H310_08804 [Aphanomyces invadans])

HSP 1 Score: 315.464 bits (807), Expect = 3.016e-104
Identity = 149/195 (76.41%), Postives = 174/195 (89.23%), Query Frame = 0
Query:   50 SRRYLKSMAVREP--EPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAP 242
            +R+  ++ ++ EP  + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKMI VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RR++F NL+ WLQEVEVYS   GR++VK+LVGNK+DKER+V R E EAWARSKGMLF+E+SAKT+TGI+QVF EVVQKILDNP+LL+NTAP
Sbjct:    9 TRQNARTASMAEPGVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRREGEAWARSKGMLFVESSAKTKTGIQQVFNEVVQKILDNPTLLSNTAP 203          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|698798496|ref|XP_009832277.1| (hypothetical protein H257_08181 [Aphanomyces astaci] >gi|574112448|gb|ETV77940.1| hypothetical protein H257_08181 [Aphanomyces astaci])

HSP 1 Score: 314.694 bits (805), Expect = 3.114e-104
Identity = 149/186 (80.11%), Postives = 167/186 (89.78%), Query Frame = 0
Query:   57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAP 242
            MA +  + YDHLFKLLL+GDAGVGKSS+LLRFT+D FDDH QSTIGVDFKVKMI VD KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RR++F NL+ WLQEVEVYS   GR++VK+LVGNK+DKER V R E EAWARSKGMLF+E+SAKT+TGI+QVF EVVQKILDNPSLL+NTAP
Sbjct:    1 MAEQGVDSYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERAVSRREGEAWARSKGMLFVESSAKTKTGIQQVFNEVVQKILDNPSLLSNTAP 186          
BLAST of EWM30389.1 vs. NCBI_GenBank
Match: gi|301100814|ref|XP_002899496.1| (Rab18 family GTPase, putative [Phytophthora infestans T30-4] >gi|262103804|gb|EEY61856.1| Rab18 family GTPase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 309.301 bits (791), Expect = 3.250e-102
Identity = 149/195 (76.41%), Postives = 171/195 (87.69%), Query Frame = 0
Query:   63 EPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKG 257
            + YDHLFKLLLIGDAGVGKSS+LLRFTDD FDD+ QSTIGVDFKVKM++VD K+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV RR++FENL+ WLQEVEVYS  GGR++VK+LVGNK+DKER+V R EAE WARSKGMLF+E+SAKT+ GI+QVF EVVQKIL+NP+LL+NTAP      L A A   G
Sbjct:    2 DGYDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDAKAEKSG 196          
The following BLAST results are available for this feature:
BLAST of EWM30389.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113049|gb|EWM30389.1|0.000e+0100.00rab family gtpase [Nannochloropsis gaditana][more]
gi|553182506|ref|XP_005853740.1|1.287e-172100.00rab18 -family small gtpase, partial [Nannochlorops... [more]
gi|669149436|ref|XP_008610280.1|5.271e-10774.16rab family, other [Saprolegnia diclina VS20] >gi|5... [more]
gi|813182197|ref|XP_012206169.1|9.260e-10777.11hypothetical protein SPRG_11899 [Saprolegnia paras... [more]
gi|1173960482|gb|OQS06605.1|9.526e-10678.68Rab18 family GTPase [Thraustotheca clavata][more]
gi|298712751|emb|CBJ33348.1|1.721e-10578.95Rab18, RAB family GTPase [Ectocarpus siliculosus][more]
gi|1173936691|gb|OQR87589.1|6.816e-10576.62Rab18 family GTPase [Achlya hypogyna][more]
gi|673037922|ref|XP_008872922.1|3.016e-10476.41hypothetical protein H310_08804 [Aphanomyces invad... [more]
gi|698798496|ref|XP_009832277.1|3.114e-10480.11hypothetical protein H257_08181 [Aphanomyces astac... [more]
gi|301100814|ref|XP_002899496.1|3.250e-10276.41Rab18 family GTPase, putative [Phytophthora infest... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna308rna308Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications