EWM27604.1, cds3058 (CDS) Nannochloropsis gaditana

Overview
NameEWM27604.1
Unique Namecds3058
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:624201..624275 +
Alignment locationCM002460.1:624388..625389 +
Alignment locationCM002460.1:625526..625596 +
Alignment locationCM002460.1:625674..625945 +
Alignment locationCM002460.1:626242..626807 +

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Properties
Property NameValue
Protein idEWM27604.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g5.5323.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:624201..624275 +
CM002460.1supercontigCM002460.1:624388..625389 +
CM002460.1supercontigCM002460.1:625526..625596 +
CM002460.1supercontigCM002460.1:625674..625945 +
CM002460.1supercontigCM002460.1:626242..626807 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
Homology
[Close]
BLAST of EWM27604.1 vs. NCBI_GenBank
Match: gi|585109872|gb|EWM27604.1| (hypothetical protein Naga_100069g5 [Nannochloropsis gaditana])

HSP 1 Score: 1380.54 bits (3572), Expect = 0.000e+0
Identity = 661/661 (100.00%), Postives = 661/661 (100.00%), Query Frame = 0 
Query:    1 MSTQHRFFSRLSLILVIMTMPALALRFGWRNKPTTRGSSESATIPLLQTLDEEIATLGDLIRLQSDRLQRLERLRQQVAKARAEEVGDYSAGFQWTRSAFHPSCTDYGGGARSTRHIAEDYLIRLGALSPAETWDEAVEEGAQRGNVHVTAIKMLSFQCTHDLFQGNRGGILNILAVACTNDEGGQPQKREECIGDGTKCRGRNSWLSFYDLRGDLIGSYIPLCENHSVITTLAFEMVTSDEAMLVVGAQDGSLSLHRVQLWRKGQTFAGKQPFMPSISSSIVNFPNMPHNTTSKDGLGIHVVHEGTLQLTDQSSKEAAHLASISCVLLHKNRAHGLMIISGNKAGKIQAHLRNGTLFKTVSTGQPIYAMIRHRNVLFYTAGSDVKSLNAKTLEQTTNTYCGGQHGALHSLVVDSLVPQILHAATAQGDLLTFRLMPKSRRSQPYQSQHVYADTSGAAEGSCKLIKKFASRSEDCASNDGMHLNNLITATEMTASEGGTAFNTRSPCNFVILMGKPSNWNLETKLPPRDHVNEIVIFEALLPHQRSQPLDLSWIRVYFMIIAVGLVFAWHFSKGGRSKRPGLAGLEGDSRPAHLNSIGMRPHRRHLYNLTEDDEYESEKSNEADLDGSPSMVASIKDEQRTNLRFRKLSREQLYRYDATSS 661
            MSTQHRFFSRLSLILVIMTMPALALRFGWRNKPTTRGSSESATIPLLQTLDEEIATLGDLIRLQSDRLQRLERLRQQVAKARAEEVGDYSAGFQWTRSAFHPSCTDYGGGARSTRHIAEDYLIRLGALSPAETWDEAVEEGAQRGNVHVTAIKMLSFQCTHDLFQGNRGGILNILAVACTNDEGGQPQKREECIGDGTKCRGRNSWLSFYDLRGDLIGSYIPLCENHSVITTLAFEMVTSDEAMLVVGAQDGSLSLHRVQLWRKGQTFAGKQPFMPSISSSIVNFPNMPHNTTSKDGLGIHVVHEGTLQLTDQSSKEAAHLASISCVLLHKNRAHGLMIISGNKAGKIQAHLRNGTLFKTVSTGQPIYAMIRHRNVLFYTAGSDVKSLNAKTLEQTTNTYCGGQHGALHSLVVDSLVPQILHAATAQGDLLTFRLMPKSRRSQPYQSQHVYADTSGAAEGSCKLIKKFASRSEDCASNDGMHLNNLITATEMTASEGGTAFNTRSPCNFVILMGKPSNWNLETKLPPRDHVNEIVIFEALLPHQRSQPLDLSWIRVYFMIIAVGLVFAWHFSKGGRSKRPGLAGLEGDSRPAHLNSIGMRPHRRHLYNLTEDDEYESEKSNEADLDGSPSMVASIKDEQRTNLRFRKLSREQLYRYDATSS
Sbjct:    1 MSTQHRFFSRLSLILVIMTMPALALRFGWRNKPTTRGSSESATIPLLQTLDEEIATLGDLIRLQSDRLQRLERLRQQVAKARAEEVGDYSAGFQWTRSAFHPSCTDYGGGARSTRHIAEDYLIRLGALSPAETWDEAVEEGAQRGNVHVTAIKMLSFQCTHDLFQGNRGGILNILAVACTNDEGGQPQKREECIGDGTKCRGRNSWLSFYDLRGDLIGSYIPLCENHSVITTLAFEMVTSDEAMLVVGAQDGSLSLHRVQLWRKGQTFAGKQPFMPSISSSIVNFPNMPHNTTSKDGLGIHVVHEGTLQLTDQSSKEAAHLASISCVLLHKNRAHGLMIISGNKAGKIQAHLRNGTLFKTVSTGQPIYAMIRHRNVLFYTAGSDVKSLNAKTLEQTTNTYCGGQHGALHSLVVDSLVPQILHAATAQGDLLTFRLMPKSRRSQPYQSQHVYADTSGAAEGSCKLIKKFASRSEDCASNDGMHLNNLITATEMTASEGGTAFNTRSPCNFVILMGKPSNWNLETKLPPRDHVNEIVIFEALLPHQRSQPLDLSWIRVYFMIIAVGLVFAWHFSKGGRSKRPGLAGLEGDSRPAHLNSIGMRPHRRHLYNLTEDDEYESEKSNEADLDGSPSMVASIKDEQRTNLRFRKLSREQLYRYDATSS 661
The following BLAST results are available for this feature:
BLAST of EWM27604.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109872|gb|EWM27604.1|0.000e+0100.00hypothetical protein Naga_100069g5 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3066rna3066Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications