EWM27699.1, cds2974 (CDS) Nannochloropsis gaditana

Overview
NameEWM27699.1
Unique Namecds2974
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:417076..417144 -
Alignment locationCM002460.1:415693..416937 -
Alignment locationCM002460.1:414565..415581 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27699.1
Productu2 small nuclear ribonucleoprotein auxiliary factor u2af
Orig transcript idgnl|cribi|Naga_100104g5.5962.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:417076..417144 -
CM002460.1supercontigCM002460.1:415693..416937 -
CM002460.1supercontigCM002460.1:414565..415581 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|585109971|gb|EWM27699.1| (u2 small nuclear ribonucleoprotein auxiliary factor u2af [Nannochloropsis gaditana])

HSP 1 Score: 1550.03 bits (4012), Expect = 0.000e+0
Identity = 776/776 (100.00%), Postives = 776/776 (100.00%), Query Frame = 0
Query:    1 MDDGSGVKTRVDEGRATQHIAEKDSDAAPEDHGSSGEAATTVVETGIVKKSSDDEGSREESKERKKKKDKKEKKEKKSKKEKKEKKRSHRDEGSGGEDGERRKKRKEREDDLQGKEEPEESDEDFHRERARRREDRRDVRDYEVRGRRPYDRQRSRSPPRPRNRQTRRRSLSPPRGRMRDNGRRGGPMRRSRSRSRSRSRSRDRGSRGRRRGGRRSRSAGRSASPRAKSRSRSGSSSRRRHQKKANSDDEEESNGGKEEELEPGWVDVVKEGGMGGPLPSLQDMLGQNRGMGVMQALQKIEQIKQLRVFAVQAAGQAQQLLVNTLAAARLAAASPITLADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDKEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDTDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLHADPLEEDTAPAEASVGETAGGNGTTETGGTEDGVMSLSLGKKEEEGAEGAREEGKEDPPEEPLPVAVPQAVEEDLD 776
            MDDGSGVKTRVDEGRATQHIAEKDSDAAPEDHGSSGEAATTVVETGIVKKSSDDEGSREESKERKKKKDKKEKKEKKSKKEKKEKKRSHRDEGSGGEDGERRKKRKEREDDLQGKEEPEESDEDFHRERARRREDRRDVRDYEVRGRRPYDRQRSRSPPRPRNRQTRRRSLSPPRGRMRDNGRRGGPMRRSRSRSRSRSRSRDRGSRGRRRGGRRSRSAGRSASPRAKSRSRSGSSSRRRHQKKANSDDEEESNGGKEEELEPGWVDVVKEGGMGGPLPSLQDMLGQNRGMGVMQALQKIEQIKQLRVFAVQAAGQAQQLLVNTLAAARLAAASPITLADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDKEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDTDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLHADPLEEDTAPAEASVGETAGGNGTTETGGTEDGVMSLSLGKKEEEGAEGAREEGKEDPPEEPLPVAVPQAVEEDLD
Sbjct:    1 MDDGSGVKTRVDEGRATQHIAEKDSDAAPEDHGSSGEAATTVVETGIVKKSSDDEGSREESKERKKKKDKKEKKEKKSKKEKKEKKRSHRDEGSGGEDGERRKKRKEREDDLQGKEEPEESDEDFHRERARRREDRRDVRDYEVRGRRPYDRQRSRSPPRPRNRQTRRRSLSPPRGRMRDNGRRGGPMRRSRSRSRSRSRSRDRGSRGRRRGGRRSRSAGRSASPRAKSRSRSGSSSRRRHQKKANSDDEEESNGGKEEELEPGWVDVVKEGGMGGPLPSLQDMLGQNRGMGVMQALQKIEQIKQLRVFAVQAAGQAQQLLVNTLAAARLAAASPITLADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDKEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDTDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLHADPLEEDTAPAEASVGETAGGNGTTETGGTEDGVMSLSLGKKEEEGAEGAREEGKEDPPEEPLPVAVPQAVEEDLD 776          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|970633960|gb|KUF79398.1| (Splicing factor U2AF 50 kDa subunit [Phytophthora nicotianae])

HSP 1 Score: 199.519 bits (506), Expect = 2.177e-53
Identity = 138/381 (36.22%), Postives = 206/381 (54.07%), Query Frame = 0
Query:  333 ASPITLADST--KPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDK-EGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDT--DAEEVEEIKEEVMDECRKYGNVVSVHMD--------PAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLH 700
            AS +T+A +   KPAR+LYVGNLP  V GPQL EFLS  +QQ+ LT  PG+P++  W S DG FA  + RS++E N AL L++L + G    L+ GRP   R F      M + +A   T    +G +   A       T P + + T      +  A  +  A A  +++    G  L+++N+P +L E  V+ L+EPFG+LKSF ++KD   G S G A+FEYEDK  A  A++GL GL +GG  LS+Q  P         P A A  S   + E+  S V+++ NM++ D   D EE  ++ E+V +EC+++G+V  + +         P  G I+V FG    +  A   L GR F G  ++  Y+PL+ + + +L 
Sbjct:   18 ASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRP---RSFMGPPQPMPQVSARTQTALTNLGCTPNPAW--FAQPTVPSTETTTEST---LAEATLSAIAAAQPATAEAGSGHRLIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQP---------PNAAALPSAAVTPEDEPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKNELF 379          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|325179530|emb|CCA13927.1| (splicing factor U2af large subunit putative [Albugo laibachii Nc14])

HSP 1 Score: 206.068 bits (523), Expect = 2.352e-52
Identity = 137/416 (32.93%), Postives = 215/416 (51.68%), Query Frame = 0
Query:  311 VQAAGQAQQLLVNTLAAARLAAASPITLADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTP---GSLSATSLA------GGGMVGAPAAQ-------TALA--AASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDK-EGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIP---AHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADD--TDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQ--------GFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAY 694
             Q   Q   L +  + A   A+   +  A + KPAR+LYVGNLP  + GPQL EFL   +QQ+ L+  PG+P++ +W+S DG FA  + RS++E N AL L++LP+ G    L+ GRP  +         M     + +     V A +  A  +LG    P    S   TS        G G+ G  ++        TALA   AS  +      L+++N+PG+L E  V+ L++PFG+L+ F ++KD   G S G A FEY++      AL GL GLD+GG +LS++  P    +    +L P        GA+ EE G  V+R+ NM+++D   + EE  ++KE+V +EC+++G ++++ +  +Q        G IFV +   + +  AQ  L GR F G  ++  Y+ L  +
Sbjct:  437 TQLMQQYPTLSLQDIIAKMQASNVTMAAAVAMKPARELYVGNLPATITGPQLQEFLGTIIQQVGLSTQPGNPILSVWISTDGHFAFCEMRSVEECNLALLLNQLPLLG--QPLKFGRPRSF---------MGPPQPMPI-----VSARTQTALVNLGCTPNPVWFASPDVTSFGSDPMGFGNGLNGFLSSSSSSLMSATALADSLASLPSDPNATQLLMSNIPGVLAEEQVKELVQPFGELRFFKLIKDPITGQSTGTAFFEYQENQVTTEALNGLDGLDIGGVKLSVRRAPDATKYPQIAVLMP--------GAAGEEPGP-VLRMANMVSEDELKNDEEFADLKEDVEEECKRFGTIIALDIPRSQDGEEIAGTGNIFVRYSDTKEATAAQKALCGRKFGGNVVKVTYFSLSKF 827          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|301121478|ref|XP_002908466.1| (splicing factor U2af large subunit, putative [Phytophthora infestans T30-4] >gi|262103497|gb|EEY61549.1| splicing factor U2af large subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 200.29 bits (508), Expect = 1.043e-51
Identity = 139/381 (36.48%), Postives = 204/381 (53.54%), Query Frame = 0
Query:  333 ASPITLADST--KPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDK-EGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDT--DAEEVEEIKEEVMDECRKYGNVVSVHMD--------PAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLH 700
            AS +T+A +   KPAR+LYVGNLP  V GPQL EFLS  +QQ+ LT  PG+P++  W S DG FA  + RS++E N AL L++L + G    L+ GRP   R F      M + +A   T    +G +   A     A  T  S   T+          +A  A   A S A S G  L+++N+P +L E  V+ L+EPFG+LKSF ++KD   G S G A+FEYED   A  A++GL GL +GG  LS+Q  PA  A+           +  A+ E+  S V+++ NM++ D   D EE  ++ E+V +EC+++G V  + +         P  G I+V FG    +  A   L GR F G  ++  Y+P++ + + +L 
Sbjct:  232 ASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWTSTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRP---RSFMGPPQPMPQVSARTQTALTNLGCTPNPA---WFAQHTVSSTETTTTETTLAEATLSAIAAAQPAGSEAVSSGNRLIMSNIPVVLAEEQVKELVEPFGKLKSFTLVKDSATGASLGSALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPASSAA-------ALPSAAAANPEDQPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGGVTGMEIPRPKDGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPVDKFEKNELF 597          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|953488997|emb|CEG47540.1| (splicing factor u2af large [Plasmopara halstedii])

HSP 1 Score: 202.986 bits (515), Expect = 1.120e-51
Identity = 135/372 (36.29%), Postives = 199/372 (53.49%), Query Frame = 0
Query:  333 ASPITLADST--KPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKD-KEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDT--DAEEVEEIKEEVMDECRKYGNVVSVHMD--------PAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPL 691
            AS +T+A +   KPAR+LYVGNLP  V GPQL EFLS  +QQ+ LT  PG+P+V  W+S DG FA  + RS++E N AL L++L + G    L+ GRP   R F      M + +A   T    +G +   A         PGS+  T+          +A  A  +AS+S       L+++N+P +L E  V+ L+EPFG+LK+F ++KD   G S G A+FEYED + A  A++GL GL +GG  LS+Q  P    + L      A  S     +E  S  +++ NM++ D   D +E  ++ E+V +EC+++G+VV + +         P  G I+V FG    +  A   L GR F G  +   Y+P 
Sbjct:  345 ASNVTMAAAVAQKPARELYVGNLPPSVTGPQLQEFLSTIIQQVGLTTKPGNPIVNTWISTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRP---RSFMGPPQPMPQVSARTQTALTNLGCTPNPAW--FAQPVLPGSMEVTTTESTLAEATLSAIAAAQSASASGAGSEHRLIMSNIPVVLTESQVKELVEPFGKLKTFTLIKDPATGTSLGNALFEYEDSSVAAQAMEGLNGLSIGGILLSVQRQPPASGAGL-----GAFSSAITKSDEQPSAALKMTNMVSIDELRDDDEYADLAEDVEEECKRFGSVVGMEIPRPKEGEDVPGLGCIYVRFGKQEEAVSALKALNGRKFGGNIVNVTYFPF 704          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|695405687|ref|XP_009523890.1| (hypothetical protein PHYSODRAFT_488481 [Phytophthora sojae] >gi|348681357|gb|EGZ21173.1| hypothetical protein PHYSODRAFT_488481 [Phytophthora sojae])

HSP 1 Score: 199.904 bits (507), Expect = 2.934e-51
Identity = 138/391 (35.29%), Postives = 217/391 (55.50%), Query Frame = 0
Query:  333 ASPITLADST--KPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVT-----------VQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDK-EGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADDT--DAEEVEEIKEEVMDECRKYGNVVSVHMD--------PAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDL 699
            AS +T+A +   KPAR+LYVGNLP  V GPQL EFLS  +QQ+ LT  PG+P++  W+S DG FA  + RS++E N AL L++L + G    L+ GRP  +    + + +++     A+T            Q AV +   AAAA +G  +T    +A ++A         A T + A+ S+ +     L+++N+P +L E  V+ L+EPFG LKSF ++KD   G S G A+FEYED +    A++GL GL +GG  LS+Q  PA  A++   P AT +       E+  S V+++ NM++ D   D +E  ++ E+V +EC+++GNV  + +         P  G I+V F   + +  A   L GR F G  ++  Y+PL+ + +++ 
Sbjct:  262 ASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIINTWISTDGHFAFCEMRSVEECNLALLLNQLSLLG--QPLKFGRPRSFMGPPQPMPQISARTQTALTNLGCTPNPAWFAQPAVPSLDEAAAAPVGDSSTLAGATAAAVAAAQPAVPAVASTTVDASLSAHR-----LIMSNIPVVLTEDQVKELVEPFGALKSFTLVKDTATGASMGSALFEYEDDSVTAQAVEGLNGLSIGGILLSVQCQPASGAALPAAPGATPNF------EDQPSAVLKMANMVSIDELRDDDEYADLAEDVEEECKRFGNVTGLEIPRPKDGEEVPGLGCIYVRFEEEKNAVDALKALNGRKFGGNIVKVTYFPLDKFDKQEF 639          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|635361103|emb|CCI49835.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 181.415 bits (459), Expect = 4.169e-44
Identity = 136/416 (32.69%), Postives = 213/416 (51.20%), Query Frame = 0
Query:  333 ASPITLADST--KPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQ-------------------TALAAASSSAQS--QGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKD-KEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIP----AHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADD--TDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQ--------GFIFVEFGSARASK--------RAQT---RLEGRSFDGRTIRCRYYPLEAYLRRDL 699
            AS +T+A +   KPAR+LYVGNLP  + GPQL EFL   +QQ+ L+  PG+P++ +W+S DG FA  + RS++E N AL L++LP+ G    L+ GRP  +         M     + +     V A +  A  +LG    P   ++  +A  GM    AA                    TALA + +S  S      L+++N+P +L E  V+ L++PFG+L  F ++KD   G S G AIFEY++      AL GL GLD+GG +LS++  P      Q ++LL          GA+ E+ G  V+++ NM+++D   + EE  ++KE+V +EC+++G ++++ +   Q        G IFV +   + +         RAQ    R EG  F    IR +   L + LR+ +
Sbjct:  386 ASNVTMAAAVAMKPARELYVGNLPATITGPQLQEFLGTIIQQVGLSTQPGNPILSVWISTDGHFAFCEMRSVEECNLALLLNQLPLLG--QPLKFGRPRSF---------MGPPQPMPI-----VSARTQTALVNLGCTPNPVWFASPDVASLGMDSMTAATFGNGLNGYLSSSTSSLMSATALAESLASLPSDPNAAQLLMSNIPSVLAEEQVKELVQPFGELNFFKLIKDPMTGQSTGSAIFEYQENQVTIDALNGLDGLDIGGVKLSVRRAPDATKYPQIAVLL---------PGAAGEDPGP-VLKMANMVSEDELQNDEEFADLKEDVEEECKRFGTILALDIPRPQDEEDVAGTGNIFVRYSDTKEATAALKASIMRAQVRWKRCEGHIFLTEQIRSQGLQLSSSLRQSV 775          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|298713809|emb|CBJ27181.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 180.644 bits (457), Expect = 2.636e-43
Identity = 143/423 (33.81%), Postives = 192/423 (45.39%), Query Frame = 0
Query:  342 TKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDG-RFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGM-VGAPAAQTALAAASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDKEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSV----VIRLQNM-----LADDTDAEEVEEIKEEVMDECRKYGNVVSVHMDPAQ--------GFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDLHADPLEEDTA-----------PAEASVG-ETAGGNGTTETGGTEDG 733
             K  R+L+VG LP GV G QL +FL+AAMQ +++    G+PV+ I M PDG  FA                         ++LR    TE            ETNA                        T G +S      G +  G P A  A A A +  + +   LM+ N+P  L +  VR LL PFG+LK FN+LKD  G SKG A+FEY D     LAL GL+GL +G  +L +Q +PA  A+ LL+PV          E+E  +V    V+RL NM     LADDT   E  EIK +V++EC +YG V S  +   +        G IFVEF     + + +  L GR F G+ ++  YYPL+ +         +EE  A           PAE   G E  G +G    G  +DG
Sbjct:  745 NKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVIRIAMGPDGTNFAF------------------------IELR----TE-----------EETNA------------------------TLGRMSGIQCGTGHLKFGRPKAHAAGATAVAPKKEESSVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYTDMENGQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVKE-----VEDEQDNVEPTCVVRLSNMVEVEELADDT---EYAEIKGDVVEECEQYGKVKSAEVPRPEDGKEVLGLGEIFVEFEDVAGATKGRNALAGRKFGGKAVKATYYPLDLFQMGVFGKPSVEEAPAVTKEPEKKHPTPAEVQPGAEQGGAHGFVIVGEADDG 1096          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|1173955063|gb|OQS02136.1| (splicing factor U2af large subunit [Thraustotheca clavata])

HSP 1 Score: 167.162 bits (422), Expect = 1.023e-40
Identity = 121/370 (32.70%), Postives = 180/370 (48.65%), Query Frame = 0
Query:  339 ADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMG--PGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALAAASSSAQ----SQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDKEGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQEIPAHQASMLLRPVATASGSTGASEEEGGSVVIRLQNMLADD--TDAEEVEEIKEEVMDECRKYGNVVSVHMD------PAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAY 694
            A S KP R+LYVGNLP  V G QL EFL   +QQ+ L++   PG+P++  W+S D +FA ++ R+++E N AL L++L + G   QL+ GRP  +                    Q     SS    A +  G TP  +     A    + A       +  +   Q    +    L++AN+P  L E  V  LLEPFG++  F ++KD EG S G A+FEY+D+A   +AL GL GLD+ G  L +Q  P         P         A  E   + VI L NM+ +    D E   E+KE++ +EC KYG++VS+ +       P  G +F+ F +   +  A   L+GR F G  +   Y  ++ +
Sbjct:  156 AVSLKPMRELYVGNLPPNVTGSQLQEFLGTIIQQVGLSLPGQPGNPILSAWISTDNQFAFLEMRTVEECNLALLLNQLNMLG--RQLKFGRPRSF----------------VGPAQPMPNISSRTQTALVNLGCTPNPMWFAGGAAACGLAAAGLLAPNSGFTDIGQLPPDNTSNRLLMANIPTALQENQVAQLLEPFGEVSRFLLVKDSEGNSTGSALFEYKDEAVTQVALDGLNGLDIAGSNLIVQRAPPQGVIPEYNP--------NAPHERAPTEVIELGNMVQESELEDEETFNELKEDIEEECSKYGSIVSLVIPRPQDGIPGVGKVFIRFENIAGAVTALKALKGRKFGGNVVAVSYIDVDDF 499          
BLAST of EWM27699.1 vs. NCBI_GenBank
Match: gi|1113791801|ref|XP_019356435.1| (PREDICTED: splicing factor U2AF 65 kDa subunit isoform X1 [Alligator mississippiensis])

HSP 1 Score: 166.007 bits (419), Expect = 1.579e-40
Identity = 137/424 (32.31%), Postives = 207/424 (48.82%), Query Frame = 0
Query:  300 IEQIKQLRVFAVQAAGQAQQL-LVNTLAAARLAAAS---PITLADSTKPARQLYVGNLPVGVLGPQLAEFLSAAMQQMQLTMGPGSPVVGIWMSPDGRFALVDFRSLDEANKALALDKLPVGGGTMQLRVGRPTEYREFYETLLKMTETNALAVTVQHAVGASSGAAAASLGAGTTPGSLSATSLAGGGMVGAPAAQTALA-AASSSAQSQGQFLMLANVPGILGEVDVRALLEPFGQLKSFNMLKDK-EGMSKGIAIFEYEDKAQAGLALKGLAGLDLGGKRLSIQ--EIPAHQASMLL---RPVAT-ASGSTGASEEEGG--SVVIRLQNML--ADDTDAEEVEEIKEEVMDECRKYGNVVSVHMD--------PAQGFIFVEFGSARASKRAQTRLEGRSFDGRTIRCRYYPLEAYLRRDL 699
             E I  ++  A+QAAGQ     L+ T+    LA      P+  +  T+ AR+LYVGN+P G+    + +F +A M+   LT  PG+PV+ + ++ D  FA ++FRS+DE  +A+A D +   G ++++R  RP +    Y+ L  M+E  ++ V                      P SL    +  G +   P + + LA   S+        L +  +P  L +  V+ LL  FG LK+FN++KD   G+SKG A  EY D      A+ GL G+ LG K+L +Q   + A  A++      PV     G   +  + GG  + V+ L NM+   +  D EE EEI E+V DEC KYG V S+ +         P  G IFVEF S    ++A   L GR F  R +  +Y   ++Y RRD 
Sbjct:   94 FEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR--RPHD----YQPLPGMSENPSVYV----------------------PDSLRHPRVCWGAL--TPFSASPLAGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGVVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 487          
The following BLAST results are available for this feature:
BLAST of EWM27699.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109971|gb|EWM27699.1|0.000e+0100.00u2 small nuclear ribonucleoprotein auxiliary facto... [more]
gi|970633960|gb|KUF79398.1|2.177e-5336.22Splicing factor U2AF 50 kDa subunit [Phytophthora ... [more]
gi|325179530|emb|CCA13927.1|2.352e-5232.93splicing factor U2af large subunit putative [Albug... [more]
gi|301121478|ref|XP_002908466.1|1.043e-5136.48splicing factor U2af large subunit, putative [Phyt... [more]
gi|953488997|emb|CEG47540.1|1.120e-5136.29splicing factor u2af large [Plasmopara halstedii][more]
gi|695405687|ref|XP_009523890.1|2.934e-5135.29hypothetical protein PHYSODRAFT_488481 [Phytophtho... [more]
gi|635361103|emb|CCI49835.1|4.169e-4432.69unnamed protein product [Albugo candida][more]
gi|298713809|emb|CBJ27181.1|2.636e-4333.81conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173955063|gb|OQS02136.1|1.023e-4032.70splicing factor U2af large subunit [Thraustotheca ... [more]
gi|1113791801|ref|XP_019356435.1|1.579e-4032.31PREDICTED: splicing factor U2AF 65 kDa subunit iso... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2982rna2982Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications