EWM27713.1, cds2962 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|585109986|gb|EWM27713.1| (peroxisomal membrane 22 kda (mpv17 pmp22) family protein [Nannochloropsis gaditana]) HSP 1 Score: 1172.15 bits (3031), Expect = 0.000e+0 Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query: 1 MARIVLSVLGLLGLLSIEAVVPAFAFTARGNHLLSGRRGVETGISRVLRRHLPALVPDFACRAVTLTRPRHDSPTLHVHQGSESSSSTVKEETIPIMDIPTALITNHFPTPNSNSSLISAALAFTEGEPVDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDASTASSPVPETGAALMNSSDWRGPTELEPAPPGASPAEFLVSTTEERRAEEEETVGRDLLAAVTAVAPDVNEHTLHVLPDQLVETRDALRPHSDGESGGSDMAIDPARNKSNESVNEEDWAQLIGVLCKFPMACKAFGLIGRKGRSRNANRARVPRGDSREVPHPHAHSCRGIELGLPILEKSDERCLRKKCIQNNKSKQFRTHFYFLSPFKRT 570
MARIVLSVLGLLGLLSIEAVVPAFAFTARGNHLLSGRRGVETGISRVLRRHLPALVPDFACRAVTLTRPRHDSPTLHVHQGSESSSSTVKEETIPIMDIPTALITNHFPTPNSNSSLISAALAFTEGEPVDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDASTASSPVPETGAALMNSSDWRGPTELEPAPPGASPAEFLVSTTEERRAEEEETVGRDLLAAVTAVAPDVNEHTLHVLPDQLVETRDALRPHSDGESGGSDMAIDPARNKSNESVNEEDWAQLIGVLCKFPMACKAFGLIGRKGRSRNANRARVPRGDSREVPHPHAHSCRGIELGLPILEKSDERCLRKKCIQNNKSKQFRTHFYFLSPFKRT
Sbjct: 1 MARIVLSVLGLLGLLSIEAVVPAFAFTARGNHLLSGRRGVETGISRVLRRHLPALVPDFACRAVTLTRPRHDSPTLHVHQGSESSSSTVKEETIPIMDIPTALITNHFPTPNSNSSLISAALAFTEGEPVDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDASTASSPVPETGAALMNSSDWRGPTELEPAPPGASPAEFLVSTTEERRAEEEETVGRDLLAAVTAVAPDVNEHTLHVLPDQLVETRDALRPHSDGESGGSDMAIDPARNKSNESVNEEDWAQLIGVLCKFPMACKAFGLIGRKGRSRNANRARVPRGDSREVPHPHAHSCRGIELGLPILEKSDERCLRKKCIQNNKSKQFRTHFYFLSPFKRT 570
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|298709148|emb|CBJ31093.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 272.322 bits (695), Expect = 2.833e-82 Identity = 121/213 (56.81%), Postives = 160/213 (75.12%), Query Frame = 0
Query: 140 NLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKN--LLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLAS 350
NL +L+ + ++ ++TVD WRGWT+QE ++R+P+DNW YE GL HPI KT INV IY+IGDW+SQV WGR ++ L +FDL RT RNGLIGA FGP+VH+YY++SD++LP VP+NR K+++DQS+YF +KC+ YI LV LLRGD+ VK++++ VV GWRFWP H+ TY +IPPRHRVLWVN +DLLWSSILA + S
Sbjct: 153 NLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTS 365
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|219111053|ref|XP_002177278.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411813|gb|EEC51741.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 243.817 bits (621), Expect = 8.822e-74 Identity = 119/226 (52.65%), Postives = 156/226 (69.03%), Query Frame = 0
Query: 128 EPVDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPV-NRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKE 352
+P K + K N LL + + ++ +D RGWT EI +RIP DNW YE L PIF KT+INVVIY++GDW+SQ + + KN+LDFD +RT RNG IG FGPLVH YY +SD+ILP+E + NRV K+LMDQ++Y KCS YI+ VGLL+GD + V Q VK RI +VF W+FWPL H +TY VIP +HR+LWVN +DL+W++ILAS++ KE
Sbjct: 2 DPEWKDLKKKLFNGTLLAVSFGFVIFTVLNIDHGMTRGWTQSEIAMRIPLDNWANYESSLEEKPIFTKTLINVVIYLLGDWLSQTLFQK-KNVLDFDASRTLRNGFIGLCFGPLVHEYYQFSDHILPVEGGIWNRVEKILMDQTIYLTVKCSVYISAVGLLQGDDWSTVKQTVKHRIGGIVFTAWKFWPLVHCITYSVIPAQHRILWVNSVDLIWNAILASMSQKE 226
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|397602517|gb|EJK58198.1| (hypothetical protein THAOC_21696, partial [Thalassiosira oceanica]) HSP 1 Score: 243.432 bits (620), Expect = 4.275e-71 Identity = 117/234 (50.00%), Postives = 157/234 (67.09%), Query Frame = 0
Query: 135 MAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPV----NRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLAS--KEGEEDASTASS 362
+AK N LL A+ Y ++ +D RGWT EI +RIP D W YE LS P+ KT+INVVIY++GDW+SQ + ++LDFD RT RNGLIGA FGP VH YY++SD+ILP++ NR K+LMDQS+Y KCS YI VG+L G+ A++V+ RI+P++F W+FWPL H VTYG+IP RHR+LWVN +DL+W++ILA AS ++G+ +A T S
Sbjct: 131 LAKLFNAALLAASFGYVAYTVLNIDRGMTRGWTAAEIGMRIPLDTWASYENSLSAKPVATKTIINVVIYLLGDWLSQTIF-TGADVLDFDAGRTLRNGLIGACFGPAVHEYYEFSDWILPVDGSTLGVTNRAFKILMDQSLYLSVKCSIYILAVGVLSGEGLEDSAENVRTRIKPIMFTAWKFWPLVHCVTYGLIPARHRILWVNSVDLVWNAILAGFASDDEDGDSEAGTPDS 363
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|223996143|ref|XP_002287745.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976861|gb|EED95188.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 233.032 bits (593), Expect = 8.853e-70 Identity = 111/218 (50.92%), Postives = 149/218 (68.35%), Query Frame = 0
Query: 134 IMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPV----NRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILAS 347
I +K NL LL + Y + +D RGWT EI +RIP D W YE LS P+ KT+IN+VIY++GDW+SQ + + KN+LDFD ART +NG +G FGP VH YY++SD+ILP++ NR K+LMDQ++Y KCS YI +G+L GDT +Q+VK RI+P++F W+FWPL H VTYG+IP RHR+LWVN +DL+W++ILAS
Sbjct: 1 IASKLFNLTLLAVSFGYVVFSVFNIDKGMTRGWTPGEIGMRIPLDTWASYENSLSEKPVATKTIINIVIYLLGDWLSQTLFQK-KNVLDFDAARTLKNGFVGMCFGPAVHEYYEFSDWILPVDGVTLGITNRAFKILMDQTIYLSIKCSIYIMAIGVLNGDTVGNASQNVKNRIKPIMFTAWKFWPLVHCVTYGLIPARHRILWVNSVDLVWNAILAS 217
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|1210516273|dbj|GAX24839.1| (protein Mpv17 [Fistulifera solaris]) HSP 1 Score: 234.187 bits (596), Expect = 7.476e-68 Identity = 108/225 (48.00%), Postives = 149/225 (66.22%), Query Frame = 0
Query: 137 KWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVP---VNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDAS 358
K N +LL A+ +A ++ +D RGWT EI +RIP DNW YE L+ PI+ KT+INV+IY++GDW+SQ + + KNLLDFD RT RNG IG FGPLVH YY +SD ILP++ P + RV K++MDQ++Y K S Y+A V LL G++ +VKERI +V W+FWPL H +TY V+P +HR+LWVN +DL W++ILAS+ + + +
Sbjct: 101 KLFNALLLTASFGFAGYTILNIDSGMTRGWTQNEIAMRIPLDNWNNYETSLAEKPIYTKTMINVIIYLLGDWLSQTIFQK-KNLLDFDAGRTLRNGFIGLCFGPLVHEYYQFSDTILPLDSPNPLLTRVEKIVMDQTIYLSVKASIYVAAVALLAGESVETAKTNVKERIVGIVTTAWKFWPLVHCLTYTVVPAQHRILWVNCVDLFWNAILASMTGAKSNNNTN 324
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|1210526652|dbj|GAX14610.1| (protein Mpv17 [Fistulifera solaris]) HSP 1 Score: 233.032 bits (593), Expect = 1.841e-67 Identity = 107/225 (47.56%), Postives = 150/225 (66.67%), Query Frame = 0
Query: 137 KWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVP---VNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDAS 358
K N +LL A+ +A ++ +D RGWT EI +RIP DNW YE L+ PI+ KT+INV+IY++GDW+SQ + + KN+LDFD RT RNG IG FGPLVH YY +SD ILP++ P + RV K++MDQ++Y K S Y+A V LL G++ +VKERI +V W+FWPL H +TY V+P +HR+LWVN +DL W++ILAS+ + +++
Sbjct: 103 KIFNALLLTASFGFAGYTILNIDSGMTRGWTQNEIAMRIPLDNWNNYETSLAEKPIYTKTMINVIIYLLGDWLSQTIFQK-KNVLDFDAGRTLRNGFIGLCFGPLVHEYYQFSDTILPLDSPNPLLTRVEKIVMDQTIYLSVKASIYVAAVALLAGESMETAKTNVKERIVGIVTTAWKFWPLVHCLTYTVVPAQHRILWVNCVDLFWNAILASMTGAKSNNNSN 326
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|1072231892|gb|OEU16624.1| (hypothetical protein FRACYDRAFT_185852 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 229.565 bits (584), Expect = 3.125e-67 Identity = 105/214 (49.07%), Postives = 147/214 (68.69%), Query Frame = 0
Query: 140 NLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVP-VNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKE 352
N++ L A YA ++ +D RGW+ EI +RIP DNW YE L+ PI KT+INV+IY++GDW+SQ + + KNLL+FD+ RT RNG IG FGPLVH YY++SD ILP E + ++ K+LMDQ++Y KCS YI VGLL G+ + V + VK++I ++ W+FWP+ H +TY VIP +HR+LWVN +DL+W++ILAS A +
Sbjct: 42 NIMFLSLAFGYAIYTILNIDNGMTRGWSTSEISMRIPLDNWGAYESNLANKPIVTKTLINVIIYLLGDWLSQTAFQK-KNLLNFDIKRTLRNGFIGLCFGPLVHQYYEFSDAILPAENGLIIKMEKILMDQTIYLSVKCSVYICAVGLLAGEDLSTVTKTVKDKIGGIMLTAWKFWPIVHCITYSVIPAQHRILWVNSVDLVWNAILASQAQSK 254
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|922392700|ref|XP_013464759.1| (peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Medicago truncatula] >gi|657399311|gb|KEH38794.1| peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Medicago truncatula]) HSP 1 Score: 184.111 bits (466), Expect = 2.969e-49 Identity = 94/248 (37.90%), Postives = 151/248 (60.89%), Query Frame = 0
Query: 119 SAALAFTEGEPVDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIG-AMFGPLVHYYYDWSDYILPME----VPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGEEDASTAS 361
S+ L E E + ++ + N +++ A +A + L+T+D + W GWTI EI+ P NW YE L T+P+F K VI+ V+Y +GDW++Q G K L +FD AR R+GL+G A+ G L HYYY + + + P + VPV K+ DQ+ + S Y +VG+LR D+P + ++K P++ GW+ WP AH++TYGVIP R+LWV+M++L+W +IL++ ++++ E +S+ S
Sbjct: 116 SSGLVGNENEENVEKLLDRSINASIVLVAGTFALTKLLTIDSDYWHGWTIYEIVRYAPLHNWLAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEG--KPLFEFDRARMFRSGLVGFALHGSLSHYYYQFCEELFPYKGWWVVPV----KVAFDQTAWSAVWNSIYYTVVGILRFDSPINIFNELKATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDMIELIWVTILSTYSNEKSEARSSSES 357
BLAST of EWM27713.1 vs. NCBI_GenBank
Match: gi|302143057|emb|CBI20352.3| (unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 180.644 bits (457), Expect = 3.130e-49 Identity = 93/245 (37.96%), Postives = 150/245 (61.22%), Query Frame = 0
Query: 130 VDKAIMAKWRNLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKNLLDFDLARTARNGLIG-AMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLASKEGE----EDASTASSPVPETGA 369
+D++I N +++AA +A + L+T+D + W GWTI EI+ P NW YE L T+P+F K VI+ V+Y +GDW++Q G K L +FD AR R+GL+G + G L HYYY + + + P + K+ DQ+++ S Y +VG LR D+PA V +++ P++ GW+ WP AH++TYGVIP R+LWV+ ++L+W +IL++ ++++ E E ++ A+S P TG+
Sbjct: 22 IDRSI-----NATIVLAAGSFAVTKLLTIDADYWHGWTIFEILRYAPQHNWSAYEEALKTNPVFAKMVISGVVYSLGDWIAQCYEG--KPLFEFDRARMLRSGLVGFTLHGSLSHYYYQFCEALFPFQDWWVVPAKVAFDQTLWAAVWNSIYYTVVGFLRFDSPANVFGELRATFWPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARVSEASAEAASNSPPTGS 259 The following BLAST results are available for this feature:
BLAST of EWM27713.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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