EWM27736.1, cds2959 (CDS) Nannochloropsis gaditana

Overview
NameEWM27736.1
Unique Namecds2959
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:377338..377520 +
Alignment locationCM002460.1:377846..378116 +
Alignment locationCM002460.1:378224..378393 +
Alignment locationCM002460.1:378500..378630 +
Alignment locationCM002460.1:378708..379164 +
Alignment locationCM002460.1:379313..379544 +
Alignment locationCM002460.1:379632..379837 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27736.1
Productrna pol ii accessory cdc73 family protein
Orig transcript idgnl|cribi|Naga_100034g12.6309.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:377338..377520 +
CM002460.1supercontigCM002460.1:377846..378116 +
CM002460.1supercontigCM002460.1:378224..378393 +
CM002460.1supercontigCM002460.1:378500..378630 +
CM002460.1supercontigCM002460.1:378708..379164 +
CM002460.1supercontigCM002460.1:379313..379544 +
CM002460.1supercontigCM002460.1:379632..379837 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0016593Cdc73/Paf1 complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0016570histone modification
GO:0006368transcription elongation from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR007852Cdc73/Parafibromin
Homology
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|585110009|gb|EWM27736.1| (rna pol ii accessory cdc73 family protein [Nannochloropsis gaditana])

HSP 1 Score: 1127.46 bits (2915), Expect = 0.000e+0
Identity = 549/549 (100.00%), Postives = 549/549 (100.00%), Query Frame = 0
Query:    1 MSLVVRPTRRNDTPGCQALHFGTFLMCEGEWLTRKKLDGAANIDDKSTWQEKERINRSNRLSFVARLIWIRESSLAWETLSRCSAGSCLLGESGMFKGKKLCLEMCVSKKMKKRHGSQLVDQVGSLVKGRFSNEQMVLTCAYLLVSVFQRSGYYNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKPWVLEPPAVSGRKK 549
            MSLVVRPTRRNDTPGCQALHFGTFLMCEGEWLTRKKLDGAANIDDKSTWQEKERINRSNRLSFVARLIWIRESSLAWETLSRCSAGSCLLGESGMFKGKKLCLEMCVSKKMKKRHGSQLVDQVGSLVKGRFSNEQMVLTCAYLLVSVFQRSGYYNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKPWVLEPPAVSGRKK
Sbjct:    1 MSLVVRPTRRNDTPGCQALHFGTFLMCEGEWLTRKKLDGAANIDDKSTWQEKERINRSNRLSFVARLIWIRESSLAWETLSRCSAGSCLLGESGMFKGKKLCLEMCVSKKMKKRHGSQLVDQVGSLVKGRFSNEQMVLTCAYLLVSVFQRSGYYNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKPWVLEPPAVSGRKK 549          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|299471558|emb|CBN80044.1| (RNA pol II accessory factor, Cdc73 family protein [Ectocarpus siliculosus])

HSP 1 Score: 152.91 bits (385), Expect = 5.980e-37
Identity = 125/432 (28.94%), Postives = 194/432 (44.91%), Query Frame = 0
Query:  150 RSGYYNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQ---------GRLISRAALVTPSVGTGGPLKRPAVGQRL---------ASTFDGRD--LHLREVSRSTGLDAQALGELRA-LLETKRRRL-------EEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGG--------------RSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKPWVL 539
            +S YY+L +LVI+++HA  P   Y+       K   +V  ++  D+L YLRG+T  + QID+             S   L      T     + A  QRL         A    G+D  L   E +   G+    L ELRA  L  KR  +        +   + +    D+ +   + A+E  ++DRN+ L      +R AL       ++ KD + +      +     +R   R+ G   GG                         P+IIVP+ P++LV + N  D L++  F+   D+ KSK   ++  E+ I +V   G + ++FRV+DN   L  +EW + V V   G AWQF  W+ + PV LF    G  + FDD  V  +V  WNV+  +INK+KRH+D  A+  FW  L  ++ LNKP ++
Sbjct:   44 QSEYYSLKQLVILLEHADAPMVTYIAACTS--KGVKWVASIEKADVLAYLRGQTDDAAQIDKTAAPPSSERANKRSHNELQKGMTDTEMREAKKAHAQRLENRGGGGSRAGLLSGQDPLLSRGEGTGIGGISQDKLLELRAKRLSHKRNTIVSVGDDAADNPVDPKFLGADKMIVAKILANEMSISDRNSVLRKEGKSFRFALEYYNQVRRKEKDQARENVDGYGKRKTRADRE-ARQSGSGRGGTISASGGRGGSGGGAGGGGDLAGATPVIIVPTVPTSLVTLYNATDFLQDGNFIPTMDK-KSKSE-RKPSEIMIERVNSQGKK-MKFRVIDNATRLHPKEWKACVCVLVQGAAWQFKGWEWDQPVTLFQNVLGVHMKFDDVRVNDKVSQWNVRVLEINKHKRHLDKGALLEFWRLLDEFMLLNKPEMM 469          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|1173936249|gb|OQR87232.1| (parafibromin-like protein [Achlya hypogyna])

HSP 1 Score: 143.28 bits (360), Expect = 4.389e-34
Identity = 112/379 (29.55%), Postives = 175/379 (46.17%), Query Frame = 0
Query:  154 YNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLK 532
            Y+L+ +V  + +A L + +YL K   V  Q + V  +D  +L+ YL+G+  TS Q+ +               T  P KR AV +  A T D +D  L   S  +                      + AKE     V EE  + + A E    DR T + TP + +   L+  E  LK  KD   K   S  + S+L ++   ++  P    + + +      PII+VP+  S L+NM N  D LE+  ++      K  +G +  K  SI           +FRVVD+ + LQ++EW S+V V  +G+ WQF DWK N P+++F R  G  +      +  E+K W+VK   I+ +KRH+D +A   FW+ L   +K
Sbjct:   60 YDLLAVVTCVQYADLSFAEYLPKCRAV--QASIVSTVDKKELIAYLKGDIDTSVQVYEP--------------TSAP-KRKAVDESTAVTSDTKDASLTVASSPS----------------------KKAKETPETDVQEEALKRILAREYTHRDRTTMMTTPKS-FENVLSIFETLLKEEKD---KMDKSSGKPSLLMHQV--KQVLPL---KVAMKNKIPDIPIIVVPAGVSDLINMLNAKDFLEDGAYITTAQ--KKSEGCR--KSASIMINYTDNEETYQFRVVDSVLRLQDKEWKSIVGVIVSGQMWQFKDWKWNFPMEVFKRACGIHIYSHGTTLNEEIKKWDVKILMIHPHKRHLDKVAAREFWSHLFAHIK 386          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|1173946526|gb|OQR95046.1| (Voltage-gated Ion Channel (VIC) Superfamily [Thraustotheca clavata])

HSP 1 Score: 133.65 bits (335), Expect = 3.892e-29
Identity = 109/379 (28.76%), Postives = 178/379 (46.97%), Query Frame = 0
Query:  154 YNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLK 532
            Y+L+ +V  + +A L + +YL K   V  Q   V  +D  +L+ YL+G+  +S Q+ +               T  P ++ A                 E S +  + + ++ +     E    +  + +KEE   + DE M RI+ + E    DR T + TP A +   L+  EA LK  KD   K   S  + S+L ++A  ++  P    R + +      PII+VP   S L+NM NV D LE+  +V      K  +G +  K+ SI           +FR+VD+   L +++W S+V V  +G  WQF  WK + P+++F RC G  +      +  EVK W+VK   ++ +KRH+D +A   FW QL  ++K
Sbjct:   60 YDLLAVVTCMQYADLSFAEYLPKCRAV--QANIVSTVDKKELIAYLKGDIDSSVQVYEP--------------TTAPKRKAA----------------DETSTAPDVKSSSITQ-----EGSPSKKAKESKEEN--EQDEAMKRIM-SREYTHRDRTTMMETPKA-FDNVLSNFEALLKEEKD---KMDKSSGKPSLLMHQA--KQVIPL---RVAMKNKIPETPIIVVPPGVSDLINMLNVRDFLEDGVYVTTAQ--KKSEGQR--KQASIMINYTDNEETYQFRLVDSVARLNDKDWKSIVGVIVSGHTWQFKGWKWSFPMEVFKRCCGIHIYAHGTSLNEEVKKWDVKILMLHPHKRHLDKVAAREFWTQLFAYIK 385          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|1183350293|gb|ORX78511.1| (CDC73-domain-containing protein [Anaeromyces robustus])

HSP 1 Score: 127.102 bits (318), Expect = 1.657e-28
Identity = 62/154 (40.26%), Postives = 95/154 (61.69%), Query Frame = 0
Query:  378 PIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWL 531
            PIIIVPS P++L+ M N+   LE+ +F+  Q+  +   G+K+ + L+IT+    G   +++ VVD+    Q+ EW+ VVAVF+ G +WQF  WK + P +LF +  G  L + D+ ++  VK WNVK  KI KNKRH D   +  FWN+L  ++
Sbjct:  217 PIIIVPSAPTSLITMYNIRQFLEDKQFLEPQECRRQ--GVKKEQRLTITRTRSDGKGELKYYVVDSVDRFQDAEWSKVVAVFTCGASWQFKGWKWSNPTELFSKVRGFYLQYQDDILKEPVKDWNVKVLKIEKNKRHHDIQTVLEFWNELDRYM 368          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|325183139|emb|CCA17597.1| (parafibrominlike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 127.102 bits (318), Expect = 2.451e-28
Identity = 105/381 (27.56%), Postives = 171/381 (44.88%), Query Frame = 0
Query:  154 YNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVT-PSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKL 533
            Y+L+ +V    +A LP+ +Y+ K     ++   V  +D  +L+ YL+G+  TS QI      +R   VT  S     P KR    ++ AS         +  S    +  Q     ++L +T+              ++D+ M  I  A EQ   +R   +  PT  +   L  VEA     K+   KA  + + +    +  V      S   R   +G+    PII+VP+  S L  M NV D L++  +V +    K + GL++    +I K  +G      F+VVD+    +++EW+ VV V  +G+ WQF  WK   P+ +F R  G  +      +  E+K W+VK   I+ +KRH+D +A   FW  L   +KL
Sbjct:   54 YDLLAIVTCFKYATLPFGEYVTKCRA--EKAGMVSTVDKKELIAYLKGDIDTSAQIYSLGSKARENDVTIDSKAASTPEKRTYDEEQAASKVSSPSKRQKTTSEGDKMTPQK--SRKSLTDTQ--------------ELDQVMQGI-SAKEQTFRNRTNIMNAPTKTFENVLKIVEAVNAEIKERLEKASKASLIAPTTRHEQVPL----SVTMRERIKGT----PIIVVPAGFSDLFTMYNVKDFLQDGVYVPISQ--KKEQGLRKDHAFTIAKEYNG--EEFVFKVVDSVNRFRDKEWSCVVGVLVSGQTWQFKGWKWAFPLQVFKRVCGIHIHRQGSQLSEEIKKWDVKILMIHPDKRHLDKVAAKEFWRYLFEHIKL 403          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|669147916|ref|XP_008609520.1| (hypothetical protein SDRG_05575 [Saprolegnia diclina VS20] >gi|530739116|gb|EQC37358.1| hypothetical protein SDRG_05575 [Saprolegnia diclina VS20])

HSP 1 Score: 125.176 bits (313), Expect = 8.966e-28
Identity = 105/380 (27.63%), Postives = 172/380 (45.26%), Query Frame = 0
Query:  154 YNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKV-DEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLK 532
            Y+L+ +V  + +A L + +YL K   +    + V  +D  +L+ YL+G+  +S Q+ +               T  P KR AV                        DA +  +++   +  +   ++ AKE  L    DE + RIL A E    DR T + TP + +   L   E  LK  KD   K   S  + S+L ++   ++  P    + + +      PII+VP+  S L+N+ N  D LE+  ++      K  +G +  K  SI           +FR+VD+   L ++EW S+V V  +G+ WQF DWK N P+++F R  G  +      +  E+K W+VK   I+ +KRH+D +A   FW  L   +K
Sbjct:   60 YDLLAVVTCVQYADLTFAEYLPKCRAI--SASLVSTVDKKELIAYLKGDIDSSVQVYEP--------------TTAP-KRKAVD-----------------------DAPSAPDVKVASDVMQGSPKKKAKETPLQNAQDEALKRIL-AREYTHRDRTTMMTTPKS-FENVLTIFETLLKEEKD---KMDKSSGKPSLLMHQV--KQVLPL---KVAMKNKIPDIPIIVVPAGVSDLINLLNAKDFLEDGAYITTAQ--KKAEGCR--KSASILINYTDNEETHQFRIVDSVARLNDKEWKSIVGVIVSGQTWQFKDWKWNFPMEVFKRACGIHIYSHGTTLNEEIKKWDVKILMIHPHKRHLDKVAAREFWAHLFAHIK 385          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|301109351|ref|XP_002903756.1| (parafibromin-like protein [Phytophthora infestans T30-4] >gi|262096759|gb|EEY54811.1| parafibromin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 125.561 bits (314), Expect = 1.136e-27
Identity = 101/380 (26.58%), Postives = 172/380 (45.26%), Query Frame = 0
Query:  154 YNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLN-DRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLK 532
            Y+L+ +     HA L ++ Y+ K      +   V  +D  +L+ +L+G+  +S QI         A   P+  +G   ++PA  +      + R    R++++                E  R +  EG K  +  K DE+M RI   D + +N  R T L      +   + T+E      K+   KA  +   S++L    V +E+ P        +   L  PII+VP+  S L  M N  D LE+  +V   +  K  +G ++ + + IT   DG      F+VVD     ++++W SVV V  +G++WQF  WK   P+++F +  G  +      +  E+K W+VK   I+ +KRH+D +A   FW  L  ++K
Sbjct:   62 YDLLAVHTCFKHADLSFSDYVLKCRE--DKAAMVSTVDKKELVAFLKGDIDSSPQI-------LDASGKPTAASGDKDRKPAAKKTREPEDEARAAKKRKLAQEK--------------ENHRHKHGEGHKSPQELKQDEQMKRI--TDREYVNRTRTTVLDAHKTKFENVVKTLELVNAETKEKIEKASKA---SALLATTTVRKEQLPL---HRLVKEKILGTPIIVVPAGFSDLFTMLNAKDFLEDGVYVS--NMQKKSEGQRKQQSMMITHEEDG--HVYTFKVVDTVNRFRDKDWRSVVGVIVSGQSWQFKGWKWKFPLEVFKKVCGVHIYNQGSQLNPEIKQWDVKVLMIHPDKRHLDKVAAKEFWRYLFAFIK 406          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|1183437802|gb|ORY61992.1| (CDC73-domain-containing protein [Neocallimastix californiae])

HSP 1 Score: 124.405 bits (311), Expect = 1.433e-27
Identity = 86/285 (30.18%), Postives = 140/285 (49.12%), Query Frame = 0
Query:  248 DLHLREVSRSTGLDAQALGELRALLET-KRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGKAGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWL 531
            D+   E S+S   + +   E+  + E+ K+++++E  K+ E+ K      R L+  + +L  R T              T E+  K A D+       + +      +        S      S+   L  PIIIVPS P++L+NM NV   LE  K++  Q+    K G+K+  ++SI +    G R   + VVD+    ++Q+W +VVA+F+ G AWQF  WK + P +LF +  G  L + D+ ++  VK WNVK  K+ K KRH D   +  FWN+L  ++
Sbjct:  100 DVKADESSKSVK-EKRGSSEIEGVNESAKKQKIDENDKDIEIVKQITARERTLQNRKSILQFRGT-------------KTFESAHKIATDIFLSENKPKPKEGTSNQKESHHHRSHSKTHGIYSKPQELGIPIIIVPSAPTSLINMYNVKKFLEEKKYIEPQEC--RKQGVKKEAKISIKRERPNG-RSKEYFVVDSVDKFRDQDWENVVAIFTCGAAWQFKGWKWSNPTELFSKIRGFYLQYQDDILKEPVKEWNVKVLKVEKYKRHHDIQTVLEFWNELDRYM 367          
BLAST of EWM27736.1 vs. NCBI_GenBank
Match: gi|734543774|gb|KHN72688.1| (Parafibromin [Toxocara canis])

HSP 1 Score: 126.716 bits (317), Expect = 1.456e-27
Identity = 67/173 (38.73%), Postives = 101/173 (58.38%), Query Frame = 0
Query:  365 GGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWK-HNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKP 536
             GR   R SR+  PIII+P+  ++L+ M NV D+L++ +FV  ++R   K   +R  E+ I +  +GG   V +RVVDN + L + EW+ VVAVF  G AWQF  W+    P D+F       L+FDD+ + G V  W+V   K+++ KRH+D   ++ FW  L  ++  NKP
Sbjct:  341 NGRPQKRQSRM--PIIIIPAAGTSLITMYNVRDILQDMRFVSTEER---KGACRRENEVLIQRAKNGGVT-VPYRVVDNALKLNDDEWSRVVAVFVQGPAWQFKGWRWGGNPTDIFANVAAFHLMFDDQRLDGNVAKWSVNILKLSRTKRHLDRAMLARFWETLDHYIVKNKP 507          
The following BLAST results are available for this feature:
BLAST of EWM27736.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110009|gb|EWM27736.1|0.000e+0100.00rna pol ii accessory cdc73 family protein [Nannoch... [more]
gi|299471558|emb|CBN80044.1|5.980e-3728.94RNA pol II accessory factor, Cdc73 family protein ... [more]
gi|1173936249|gb|OQR87232.1|4.389e-3429.55parafibromin-like protein [Achlya hypogyna][more]
gi|1173946526|gb|OQR95046.1|3.892e-2928.76Voltage-gated Ion Channel (VIC) Superfamily [Thrau... [more]
gi|1183350293|gb|ORX78511.1|1.657e-2840.26CDC73-domain-containing protein [Anaeromyces robus... [more]
gi|325183139|emb|CCA17597.1|2.451e-2827.56parafibrominlike protein putative [Albugo laibachi... [more]
gi|669147916|ref|XP_008609520.1|8.966e-2827.63hypothetical protein SDRG_05575 [Saprolegnia dicli... [more]
gi|301109351|ref|XP_002903756.1|1.136e-2726.58parafibromin-like protein [Phytophthora infestans ... [more]
gi|1183437802|gb|ORY61992.1|1.433e-2730.18CDC73-domain-containing protein [Neocallimastix ca... [more]
gi|734543774|gb|KHN72688.1|1.456e-2738.73Parafibromin [Toxocara canis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2967rna2967Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications