EWM30387.1, cds294 (CDS) Nannochloropsis gaditana

Overview
NameEWM30387.1
Unique Namecds294
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:731341..731382 +
Alignment locationCM002455.1:731515..731773 +
Alignment locationCM002455.1:731858..732021 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30387.1
Product60s ribosomal protein l24
Orig transcript idgnl|cribi|Naga_100026g22.10641.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:731341..731382 +
CM002455.1supercontigCM002455.1:731515..731773 +
CM002455.1supercontigCM002455.1:731858..732021 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023442Ribosomal_L24e_CS
IPR023441Ribosomal_L24e_dom
IPR000988Ribosomal_L24e-rel
Homology
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|585113047|gb|EWM30387.1| (60s ribosomal protein l24 [Nannochloropsis gaditana])

HSP 1 Score: 308.145 bits (788), Expect = 5.342e-106
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKAKQAKMKPAGAAAGGSKQASKTKAAPKGRGTQR 154
            MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKAKQAKMKPAGAAAGGSKQASKTKAAPKGRGTQR
Sbjct:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKAKQAKMKPAGAAAGGSKQASKTKAAPKGRGTQR 154
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|695415134|ref|XP_009526477.1| (hypothetical protein PHYSODRAFT_354582 [Phytophthora sojae] >gi|348677602|gb|EGZ17419.1| hypothetical protein PHYSODRAFT_354582 [Phytophthora sojae])

HSP 1 Score: 160.999 bits (406), Expect = 7.097e-48
Identity = 83/143 (58.04%), Postives = 107/143 (74.83%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKA-KQAKMKPAGAAAGGSKQASK 142
            MVIKT+ CSFSE R+YPGHG RF+RRD +  VF  +K+K L+ QRKKA ++VWT GWRR++KK+KVEE+ +RR R+TTK QRAIVG S E+I+KKR QKPE  A   AALKE KER+KA K+  +A+    G+  G + +A K
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRFIRRDGSAYVFINSKSKSLFMQRKKATKIVWTLGWRRMNKKLKVEEVARRRARKTTKIQRAIVGVSAEDIRKKRNQKPEVRAAARAALKEAKERSKAKKSVNKAEHANKGSKGGNAPRAQK 143
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|953487026|emb|CEG49088.1| (60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 159.458 bits (402), Expect = 2.722e-47
Identity = 82/137 (59.85%), Postives = 103/137 (75.18%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKAKQAKMKPAGAAAGGS 137
            MVIKT+ CSFSE R+YPGHG R++RRD +  VF  AK+K L+ QRKKA ++VWT GWRR++KK+KVEE+ +RR R+TTK QRAIVG S ++I+KKR QKPE  A   AALKE KER+K MK    K++ A   A GS
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRYIRRDGSAYVFINAKSKSLFLQRKKATKIVWTLGWRRMNKKLKVEEVSRRRARKTTKIQRAIVGVSADDIRKKRNQKPEIRAAARAALKEAKERSK-MKKTVTKVEHANKGAKGS 136
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|675168055|ref|XP_008892912.1| (hypothetical protein PPTG_01387 [Phytophthora parasitica INRA-310] >gi|566022664|gb|ETI45575.1| hypothetical protein F443_09879 [Phytophthora parasitica P1569] >gi|567959963|gb|ETK85527.1| hypothetical protein L915_09677 [Phytophthora parasitica] >gi|567988693|gb|ETL38966.1| hypothetical protein L916_09581 [Phytophthora parasitica] >gi|568017910|gb|ETL92087.1| hypothetical protein L917_09506 [Phytophthora parasitica] >gi|568048330|gb|ETM45386.1| hypothetical protein L914_09545 [Phytophthora parasitica] >gi|568106451|gb|ETN21081.1| hypothetical protein PPTG_01387 [Phytophthora parasitica INRA-310] >gi|570326271|gb|ETO74219.1| hypothetical protein F444_09973 [Phytophthora parasitica P1976] >gi|570950126|gb|ETP15383.1| hypothetical protein F441_09829 [Phytophthora parasitica CJ01A1] >gi|570983688|gb|ETP43470.1| hypothetical protein F442_09784 [Phytophthora parasitica P10297] >gi|970634175|gb|KUF79517.1| 60S ribosomal protein L24 [Phytophthora nicotianae])

HSP 1 Score: 157.918 bits (398), Expect = 8.859e-47
Identity = 77/122 (63.11%), Postives = 96/122 (78.69%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKA 122
            MVIKT+ CSFSE R+YPGHG R++RRD    VF  +K+K L+ QRKKA ++VWT GWRR++KK+KVEE+ +RR R+TTK QRAIVG S E+I+KKR QKPE  A   AALKE KER+KA K+
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRYIRRDGTAYVFINSKSKSLFMQRKKATKIVWTLGWRRMNKKLKVEEVTRRRARKTTKIQRAIVGVSAEDIRKKRNQKPEVRAAARAALKEAKERSKAKKS 122
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|301095796|ref|XP_002896997.1| (60S ribosomal protein L24, putative [Phytophthora infestans T30-4] >gi|262108426|gb|EEY66478.1| 60S ribosomal protein L24, putative [Phytophthora infestans T30-4])

HSP 1 Score: 157.918 bits (398), Expect = 1.078e-46
Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPERNAQREAALKEVKERAKAMKAKQAKMKPAGAAAGGSKQASKTKAAPK 148
            MVIKT+ CSFSE R+YPGHG R++RRD    VF  +K+K L+ QRKKA ++VWT GWRR++KK+KVEE+ +RR R+TTK QRAIVG S E+I+KKR QKPE  A   AALKE K+R+KA K        A  A  G+K ASK   AP+
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRYIRRDGTAYVFLNSKSKSLFMQRKKATKIVWTLGWRRMNKKLKVEEVTRRRARKTTKIQRAIVGVSAEDIRKKRNQKPEVRAAARAALKEAKDRSKAKKT-------ASKAEHGNK-ASKGSNAPR 140
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|669155064|ref|XP_008613094.1| (50S ribosomal protein L24e [Saprolegnia diclina VS20] >gi|530735212|gb|EQC33454.1| 50S ribosomal protein L24e [Saprolegnia diclina VS20])

HSP 1 Score: 150.599 bits (379), Expect = 9.233e-44
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKP-ERNAQREAALKEVKERAKAMKAKQAKMKPA---GAAAGGSKQA 140
            MVIKTD C+FSE R+YPGHG R +R+D    +   +K K L+ QRKK A++VWT GWRR++KK++VEE+ +RR R+TTK QRAIVG S+E++KKKR QKP  R A R+AALKE K+R KA KA +A +  A     A GG+K+ 
Sbjct:    1 MVIKTDTCAFSESRIYPGHGTRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVSRRRARKTTKIQRAIVGVSVEDLKKKRNQKPAVRAAARDAALKEAKDRTKAKKADKAPINKAINKNVARGGAKKG 144
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|813172367|ref|XP_012204818.1| (hypothetical protein SPRG_10372 [Saprolegnia parasitica CBS 223.65] >gi|813177739|ref|XP_012205339.1| hypothetical protein SPRG_10718 [Saprolegnia parasitica CBS 223.65] >gi|641529869|gb|KDO24021.1| hypothetical protein SPRG_10718 [Saprolegnia parasitica CBS 223.65] >gi|641530432|gb|KDO24557.1| hypothetical protein SPRG_10372 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 149.828 bits (377), Expect = 1.383e-43
Identity = 80/144 (55.56%), Postives = 106/144 (73.61%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKP-ERNAQREAALKEVKERAKAMKAKQAKMKPA---GAAAGGSKQA 140
            MVIKTD C+FSE R+YPGHG R +R+D    +   +K K L+ QRKK A++VWT GWRR++KK++VEE+ +RR R++TK QRAIVG S+EE+KKKR QKP  R A R+AALKE K+R KA KA++A +  A     A GG+K+ 
Sbjct:    1 MVIKTDTCAFSESRIYPGHGTRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVTRRRARKSTKIQRAIVGVSVEELKKKRNQKPAVRAAARDAALKEAKDRTKAKKAEKAPINKAVNKNVARGGAKKG 144
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|298706074|emb|CBJ29184.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.828 bits (377), Expect = 1.500e-43
Identity = 79/114 (69.30%), Postives = 95/114 (83.33%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPE-RNAQREAALKEV 113
            MVIKT++C+FS+ R+YPGHG+RF+RRD   +   +AK K L  QRKK A+L WTQ WRRL+KKIKVEE+ +RRTR+TTK  RAIVGASLEEIKKKR+QKPE R+AQREAA KEV
Sbjct:    1 MVIKTEVCAFSDTRIYPGHGVRFIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEV 114
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|678321535|emb|CDW83682.1| (60s ribosomal protein [Stylonychia lemnae])

HSP 1 Score: 145.591 bits (366), Expect = 1.019e-41
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKP-ERNAQREAALKEVKER 116
            MVIKTD CSFSEYR+YPG G +F  +D     F + K   L++QRKKA +L WTQ WRR +KKIKV+EI KRRT++TT+ Q+AIVG SL+EIK++RA+KP E++ + EAA KE K+R
Sbjct:    1 MVIKTDPCSFSEYRIYPGRGRKFAAKDGKVYYFISTKVASLFHQRKKAVKLTWTQAWRRFNKKIKVDEISKRRTKKTTRVQKAIVGMSLDEIKRRRAEKPEEKDKKLEAAKKEAKQR 117
[Close]
BLAST of EWM30387.1 vs. NCBI_GenBank
Match: gi|403357754|gb|EJY78508.1| (hypothetical protein OXYTRI_24334 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 144.821 bits (364), Expect = 2.144e-41
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 0 
Query:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPE-RNAQREAALKEVKER 116
            MVIKTD CSFSEYR+YPG G +F  +D     F + K   L++QRKKA +L WTQ WRR +KKIKV+EI KRRT++TT+ Q+AIVG SL+EIK++RA+KPE ++ + EAA KE K+R
Sbjct:    1 MVIKTDPCSFSEYRIYPGRGRKFAAKDGKVYYFFSTKVMSLFHQRKKAVKLTWTQAWRRFNKKIKVDEISKRRTKKTTRVQKAIVGLSLDEIKRRRAEKPEDKDKKLEAAKKEAKQR 117
The following BLAST results are available for this feature:
BLAST of EWM30387.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113047|gb|EWM30387.1|5.342e-106100.0060s ribosomal protein l24 [Nannochloropsis gaditan... [more]
gi|695415134|ref|XP_009526477.1|7.097e-4858.04hypothetical protein PHYSODRAFT_354582 [Phytophtho... [more]
gi|953487026|emb|CEG49088.1|2.722e-4759.8560s ribosomal protein [Plasmopara halstedii][more]
gi|675168055|ref|XP_008892912.1|8.859e-4763.11hypothetical protein PPTG_01387 [Phytophthora para... [more]
gi|301095796|ref|XP_002896997.1|1.078e-4657.4360S ribosomal protein L24, putative [Phytophthora ... [more]
gi|669155064|ref|XP_008613094.1|9.233e-4455.5650S ribosomal protein L24e [Saprolegnia diclina VS... [more]
gi|813172367|ref|XP_012204818.1|1.383e-4355.56hypothetical protein SPRG_10372 [Saprolegnia paras... [more]
gi|298706074|emb|CBJ29184.1|1.500e-4369.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|678321535|emb|CDW83682.1|1.019e-4158.9760s ribosomal protein [Stylonychia lemnae][more]
gi|403357754|gb|EJY78508.1|2.144e-4158.97hypothetical protein OXYTRI_24334 (macronuclear) [... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna294rna294Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications