EWM27758.1, cds2921 (CDS) Nannochloropsis gaditana

Overview
NameEWM27758.1
Unique Namecds2921
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:294194..294216 -
Alignment locationCM002460.1:293914..294122 -
Alignment locationCM002460.1:293666..293838 -
Alignment locationCM002460.1:293315..293494 -
Alignment locationCM002460.1:292915..293220 -
Alignment locationCM002460.1:292594..292734 -
Alignment locationCM002460.1:292255..292501 -
Alignment locationCM002460.1:292007..292159 -
Alignment locationCM002460.1:291835..291893 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27758.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100248g10.5002.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:294194..294216 -
CM002460.1supercontigCM002460.1:293914..294122 -
CM002460.1supercontigCM002460.1:293666..293838 -
CM002460.1supercontigCM002460.1:293315..293494 -
CM002460.1supercontigCM002460.1:292915..293220 -
CM002460.1supercontigCM002460.1:292594..292734 -
CM002460.1supercontigCM002460.1:292255..292501 -
CM002460.1supercontigCM002460.1:292007..292159 -
CM002460.1supercontigCM002460.1:291835..291893 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27758.1 vs. NCBI_GenBank
Match: gi|585110034|gb|EWM27758.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 1017.68 bits (2630), Expect = 0.000e+0
Identity = 496/496 (100.00%), Postives = 496/496 (100.00%), Query Frame = 0
Query:    1 MEDIHISRPKAYRLASQYSDSSNGSSNVQTAVTSTEDRLEDRRRQSLRVMAAMSLNKSYSDAINGVSINKSDLEHEEDCTSKLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFCLTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRRLSSALSLSDSTNRSDSGRASDSTVTRQPAPRKAASRRSLRQAVSFSRQTTFPKPLFSEKRKKQDTKTFSSTSISPILPSTASIASTRVDDRSFSPECCRSDYEGSQREQPRITSHFTIEKPTIALSLLSTTSKLMWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRESGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRQSNVAKFYSNLSKTELKDVPST 496
            MEDIHISRPKAYRLASQYSDSSNGSSNVQTAVTSTEDRLEDRRRQSLRVMAAMSLNKSYSDAINGVSINKSDLEHEEDCTSKLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFCLTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRRLSSALSLSDSTNRSDSGRASDSTVTRQPAPRKAASRRSLRQAVSFSRQTTFPKPLFSEKRKKQDTKTFSSTSISPILPSTASIASTRVDDRSFSPECCRSDYEGSQREQPRITSHFTIEKPTIALSLLSTTSKLMWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRESGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRQSNVAKFYSNLSKTELKDVPST
Sbjct:    1 MEDIHISRPKAYRLASQYSDSSNGSSNVQTAVTSTEDRLEDRRRQSLRVMAAMSLNKSYSDAINGVSINKSDLEHEEDCTSKLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFCLTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRRLSSALSLSDSTNRSDSGRASDSTVTRQPAPRKAASRRSLRQAVSFSRQTTFPKPLFSEKRKKQDTKTFSSTSISPILPSTASIASTRVDDRSFSPECCRSDYEGSQREQPRITSHFTIEKPTIALSLLSTTSKLMWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRESGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRQSNVAKFYSNLSKTELKDVPST 496          
BLAST of EWM27758.1 vs. NCBI_GenBank
Match: gi|553186917|ref|XP_005854515.1| (hypothetical protein NGA_0160302 [Nannochloropsis gaditana CCMP526] >gi|553190630|ref|XP_005855231.1| hypothetical protein NGA_0160301 [Nannochloropsis gaditana CCMP526] >gi|422293833|gb|EKU21133.1| hypothetical protein NGA_0160301 [Nannochloropsis gaditana CCMP526] >gi|422294542|gb|EKU21842.1| hypothetical protein NGA_0160302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 388.652 bits (997), Expect = 7.056e-132
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0
Query:  312 MWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRESGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRQSNVAKFYSNLSKTELKDVPST 496
            MWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRESGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKR SNVAKFYSNLSKTELKDVPST
Sbjct:    1 MWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRESGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRHSNVAKFYSNLSKTELKDVPST 185          
BLAST of EWM27758.1 vs. NCBI_GenBank
Match: gi|299473439|emb|CBN77836.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.1738 bits (178), Expect = 2.429e-10
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0
Query:   82 KLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFCLTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRRLSSALS 183
            KLQ +  +AKE GM+ + +F+ F    E  ++++   F +ALRKL    F L E ++  LV  F+ + +  V LDE  TF L+IP + W+ E+ RRL++A S
Sbjct:  113 KLQVLLTKAKERGMSAERLFEHFAPGGE--ASVTPLMFESALRKLGQRAFDLDEMELEHLVTVFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARRLNNAES 212          
The following BLAST results are available for this feature:
BLAST of EWM27758.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Position :
0
Zoom :
x 1
01SequenceEWM27758.1XP_005854515.1CBN77836.1
Match NameE-valueIdentityDescription
gi|585110034|gb|EWM27758.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|553186917|ref|XP_005854515.1|7.056e-13299.46hypothetical protein NGA_0160302 [Nannochloropsis ... [more]
gi|299473439|emb|CBN77836.1|2.429e-1038.24conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2929rna2929Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications