EWM27756.1, cds2919 (CDS) Nannochloropsis gaditana

Overview
NameEWM27756.1
Unique Namecds2919
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:290008..290458 -
Alignment locationCM002460.1:288481..289681 -
Alignment locationCM002460.1:288271..288374 -
Alignment locationCM002460.1:288120..288212 -
Alignment locationCM002460.1:287919..288041 -
Alignment locationCM002460.1:287747..287856 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27756.1
Production channel
Orig transcript idgnl|cribi|Naga_100248g8.5000.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:290008..290458 -
CM002460.1supercontigCM002460.1:288481..289681 -
CM002460.1supercontigCM002460.1:288271..288374 -
CM002460.1supercontigCM002460.1:288120..288212 -
CM002460.1supercontigCM002460.1:287919..288041 -
CM002460.1supercontigCM002460.1:287747..287856 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009628response to abiotic stimulus
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991WHTH_DNA-bd_dom
IPR000232HSF_DNA-bd
Homology
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|585110032|gb|EWM27756.1| (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 1427.54 bits (3694), Expect = 0.000e+0
Identity = 693/693 (100.00%), Postives = 693/693 (100.00%), Query Frame = 0
Query:    1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSVLHKYPQAVSRSYTLIHRHEFHLVILTPLTTDDCPGRPRDTVHEKIIEKSRNVNETIQSEDMHKNARRRRSTPQDRRSLRGSVPNAVNEFPLNVTCEKQIWTNVKKFIKEVGEALALFERSHVRDIQADQTRFETRWEGQRYA 693
            MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSVLHKYPQAVSRSYTLIHRHEFHLVILTPLTTDDCPGRPRDTVHEKIIEKSRNVNETIQSEDMHKNARRRRSTPQDRRSLRGSVPNAVNEFPLNVTCEKQIWTNVKKFIKEVGEALALFERSHVRDIQADQTRFETRWEGQRYA
Sbjct:    1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSVLHKYPQAVSRSYTLIHRHEFHLVILTPLTTDDCPGRPRDTVHEKIIEKSRNVNETIQSEDMHKNARRRRSTPQDRRSLRGSVPNAVNEFPLNVTCEKQIWTNVKKFIKEVGEALALFERSHVRDIQADQTRFETRWEGQRYA 693          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|553186923|ref|XP_005854517.1| (ion channel [Nannochloropsis gaditana CCMP526] >gi|422294544|gb|EKU21844.1| ion channel [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1119.38 bits (2894), Expect = 0.000e+0
Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 0
Query:    1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSV 551
            MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSV
Sbjct:    1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSV 551          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516353|dbj|GAX24688.1| (hypothetical protein FisN_4Hh246 [Fistulifera solaris])

HSP 1 Score: 124.79 bits (312), Expect = 4.591e-28
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0
Query:  127 TPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKS-STVVGKE 228
             PEFL +L ++L + ++++I W NG I V +P  L   VLHKYFRHSK+SSFQRQLNYFGFRK  GKGKM+ C+Y N + +G  I SLL +KRK+ +T+  KE
Sbjct:   12 VPEFLYQLTKMLTDNNREVIEWSNGMIKVHNPPKLESQVLHKYFRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVN-ESTGKEINSLLKIKRKTGATIPSKE 113          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|219118305|ref|XP_002179930.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408983|gb|EEC48916.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 129.028 bits (323), Expect = 5.114e-28
Identity = 70/168 (41.67%), Postives = 101/168 (60.12%), Query Frame = 0
Query:  106 VPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVG---KEGGEGEE-DSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGAS 269
            VP  +T   +V    +   +  PEFL +L ++L + ++DII W NG+I V  P  L   VLHKYFRHSK++SFQRQLNYFGFRK  GKGKM+ C+Y N + S G+I SLL +KRK++  +    K+   G++ D+P       + T +D    + +  G +   +GAS
Sbjct:  119 VPMLSTAAGNVPIPGTPGNNSIPEFLYQLTKMLTDNNRDIIEWTNGKIEVHSPHKLEAQVLHKYFRHSKFASFQRQLNYFGFRKLAGKGKMAPCSYVN-EDSKGDIGSLLLIKRKTTASISLKDKDKLSGKKRDAPTSKSPKIQPTSNDPPLVNPVLAGILYRSKGAS 285          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516673|dbj|GAX24162.1| (hypothetical protein FisN_4Lh246 [Fistulifera solaris])

HSP 1 Score: 123.25 bits (308), Expect = 1.484e-27
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0
Query:  127 TPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKS-STVVGKE 228
             PEFL +L ++L + ++++I W NG I V +P  L   V+HKYFRHSK+SSFQRQLNYFGFRK  GKGKM+ C+Y N + +G  I SLL +KRK+ +T+  KE
Sbjct:   12 VPEFLFQLTKMLTDNNREVIEWSNGMIKVHNPPKLESQVMHKYFRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVN-ESTGKEINSLLRIKRKTGATISTKE 113          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1072228569|gb|OEU13304.1| (hypothetical protein FRACYDRAFT_262197 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.709 bits (304), Expect = 2.028e-25
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 0
Query:  103 GGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKS-STVVGKEGGE-----GEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGL 264
            GG V A+A T ++ A+ ++      PEFL +L ++L + ++DII W N +I V  P  L   VL++YFRHSK++SFQRQLNYFGFRK  GKGKM+ C+Y N   +   + SLL +KRK  +    K+GG+     G++  P  G      +++     D ++P   G+
Sbjct:  174 GGVVMASAVTNSNTANANT-----VPEFLYQLTKMLTDNNRDIIEWSNSKIEVHSPHKLETLVLNRYFRHSKFASFQRQLNYFGFRKLAGKGKMAPCSYVN-DATTDELGSLLLIKRKQGNEPTAKKGGKKRDRSGKQGKPATGRNIGRCSNTIGATNDGVNPVLAGI 335          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516359|dbj|GAX24694.1| (hypothetical protein FisN_4Hh252 [Fistulifera solaris])

HSP 1 Score: 119.398 bits (298), Expect = 6.855e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  129 EFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVG 240
            EFL +L ++L +++ ++I W +G+I V  P  L   VLHKYFRHSK++SFQRQLNYFGFRK  GKGKMS C+Y N   +  +I+SLL +KRK++    ++    +  S ++G
Sbjct:   50 EFLYQLTKMLTDDNNEVIEWSDGRIRVHYPERLEAEVLHKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-DAATSDIRSLLLIKRKTNGSAARKAAMQQRASDMIG 160          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516678|dbj|GAX24167.1| (hypothetical protein FisN_4Lh252 [Fistulifera solaris])

HSP 1 Score: 119.398 bits (298), Expect = 6.928e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  129 EFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVG 240
            EFL +L ++L +++ ++I W +G+I V  P  L   VLHKYFRHSK++SFQRQLNYFGFRK  GKGKMS C+Y N   +  +I+SLL +KRK++    ++    +  S ++G
Sbjct:   50 EFLYQLTKMLTDDNNEVIEWSDGRIRVHYPERLEAEVLHKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-DAATSDIRSLLLIKRKTNGSAARKAAMQQRASDMIG 160          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|219117896|ref|XP_002179734.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408787|gb|EEC48720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.161 bits (287), Expect = 2.770e-23
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 0
Query:  129 EFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSS 222
            EFL +L ++L +E+ +II W +G+I V  P  L   VL KYFRHSK++SFQRQLNYFGFRK  GKGKMS C+Y N + +  +I+SLL +KRK++
Sbjct:   76 EFLYQLTKMLTDENSEIIEWSDGRIKVHYPERLEGEVLQKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-EAATSDIRSLLLIKRKTN 168          
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|224008470|ref|XP_002293194.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971320|gb|EED89655.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.538 bits (275), Expect = 2.635e-22
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 0
Query:  128 PEFLVKLHRILLNEDKDIIYW------------DNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSS 222
            PEFL +L ++L + +++II W            D+G+I V +P  + + VL +YFRHSKYSSFQRQLNYFGF+K  GKGKM+ C+Y N + +  +++SLL V+RK S
Sbjct:   18 PEFLYQLMKMLTDNNREIIEWNGTVGSFGRHGGDSGRIEVHNPHRMEEEVLSRYFRHSKYSSFQRQLNYFGFKKVAGKGKMAPCSYVNEETT-CDLQSLLLVRRKGS 123          
The following BLAST results are available for this feature:
BLAST of EWM27756.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110032|gb|EWM27756.1|0.000e+0100.00ion channel [Nannochloropsis gaditana][more]
gi|553186923|ref|XP_005854517.1|0.000e+0100.00ion channel [Nannochloropsis gaditana CCMP526] >gi... [more]
gi|1210516353|dbj|GAX24688.1|4.591e-2855.34hypothetical protein FisN_4Hh246 [Fistulifera sola... [more]
gi|219118305|ref|XP_002179930.1|5.114e-2841.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516673|dbj|GAX24162.1|1.484e-2754.37hypothetical protein FisN_4Lh246 [Fistulifera sola... [more]
gi|1072228569|gb|OEU13304.1|2.028e-2539.29hypothetical protein FRACYDRAFT_262197 [Fragilario... [more]
gi|1210516359|dbj|GAX24694.1|6.855e-2547.32hypothetical protein FisN_4Hh252 [Fistulifera sola... [more]
gi|1210516678|dbj|GAX24167.1|6.928e-2547.32hypothetical protein FisN_4Lh252 [Fistulifera sola... [more]
gi|219117896|ref|XP_002179734.1|2.770e-2355.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224008470|ref|XP_002293194.1|2.635e-2247.66predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2927rna2927Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications