EWM27769.1, cds2904 (CDS) Nannochloropsis gaditana

Overview
NameEWM27769.1
Unique Namecds2904
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:244951..246919 -

Link to JBrowse

Properties
Property NameValue
Start range244951
Start range.
Protein idEWM27769.1
Productpab-dependent poly -specific ribonuclease subunit 3
Partialtrue
Orig transcript idgnl|cribi|Naga_100530g2.7729.mrna
GenePAR
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:244951..246919 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006468protein phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
IPR000719Prot_kinase_dom
IPR002290Ser/Thr_dual-sp_kinase
Homology
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|585110051|gb|EWM27769.1| (pab-dependent poly -specific ribonuclease subunit 3, partial [Nannochloropsis gaditana])

HSP 1 Score: 1323.53 bits (3424), Expect = 0.000e+0
Identity = 656/656 (100.00%), Postives = 656/656 (100.00%), Query Frame = 0
Query:    1 MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGGGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEEDDLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFKVRGGGEGQILWDAWGTHVDPVFTSVFLPPLFPPS 656
            MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGGGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEEDDLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFKVRGGGEGQILWDAWGTHVDPVFTSVFLPPLFPPS
Sbjct:    1 MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGGGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEEDDLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFKVRGGGEGQILWDAWGTHVDPVFTSVFLPPLFPPS 656          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|553188307|ref|XP_005854773.1| (PAB-dependent poly(A)-specific ribonuclease subunit 3 [Nannochloropsis gaditana CCMP526] >gi|422294289|gb|EKU21589.1| PAB-dependent poly(A)-specific ribonuclease subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1255.35 bits (3247), Expect = 0.000e+0
Identity = 622/624 (99.68%), Postives = 623/624 (99.84%), Query Frame = 0
Query:    1 MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGGGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEEDDLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFKVR 624
            MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGGGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEEDDLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK +
Sbjct:    1 MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGGGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEEDDLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFKTK 624          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|299473543|emb|CBN77938.1| (Poly(A) ribonuclease subunit [Ectocarpus siliculosus])

HSP 1 Score: 288.886 bits (738), Expect = 1.254e-84
Identity = 182/385 (47.27%), Postives = 240/385 (62.34%), Query Frame = 0
Query:  244 DSLVNPLHHYG--DEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRI-QHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVT-TGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSK--PGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            D LV P   YG  +E F W+ G ++L AP R T+    VPEQL   F    L   R LPPDD R KEIPP F+ A+PLDDA K RGTAG+FGYPS TYKV+ H +G+ +ALRRFD+ R+T KIVA   E W  + +HP I +  + F+ H NALFF+ ++HPGA+++++R++    G        L E LLW  V QL+ A+RA HAA AA R +HP+ VL    G R+R+   G +DVLE ETRK ++ELQ +D+  LG LIL LA R   T  S G +LA   Q Y+PELH L+  L SK  P   SVFE+    + + +D ++    A   L+GHL+ EY++GRL RL LKL  +  R +  +G    W+ETG RYILKLF+
Sbjct:  120 DELVGP-EAYGPQEEGFLWAAGSAALAAPQRRTMHSTAVPEQLWAEFQNHSLSVLRQLPPDDERLKEIPPQFYAAFPLDDASKTRGTAGSFGYPSETYKVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFL-HRNALFFVSDFHPGAETLSERFIQRQGG-------LLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVTVASRGESLAFTAQHYTPELHNLAASLVSKKPP---SVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPD--QGGVGEWSETGERYILKLFR 490          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|288559132|sp|P0CD65.1|PAN3_DICDI (RecName: Full=PAB-dependent poly(A)-specific ribonuclease subunit PAN3; AltName: Full=PAB1P-dependent poly(A)-nuclease; AltName: Full=PAN deadenylation complex subunit 3)

HSP 1 Score: 254.218 bits (648), Expect = 5.190e-71
Identity = 140/364 (38.46%), Postives = 208/364 (57.14%), Query Frame = 0
Query:  270 PPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPP---GFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQH----GNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTL--PTPQSLGAALAQVRQQYSPELHALSLQLCSKP--GLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            P R  +    + E L+Q  L +      +L P+DPR K IPP    +H  YPLD           FGY +  YK +S  DG  YA+RR +  R + +    A ETWR IQHPNI+ L ++F+       ++LFF +E+ PG++++  +Y+  S       P  L E +LWSF+ Q+ SA++ +H+A   CR++HP+ +L+T   R+R+   G+ DV+  +T + LA+ Q EDL + GRLILTLA R+    T  +L  ++  V  QYS EL+ L + L +KP   L ++ E+V ++S   L E +  +   DDLE  LS EYE+GRLFRL  KL  +  R   +   DP W+ETG RY++KLF+
Sbjct:  321 PGRRNIGSFFMSESLKQDILNQKSLLYLTLDPNDPRIKNIPPMLNKYHSLYPLDHDASRENQGKMFGYITSVYKAISTLDGLPYAIRRVEGFRLSSEYALQAAETWRNIQHPNIVSLKEIFVSKEFGDNSSLFFTYEFFPGSETLESKYLSQS-----GNP--LSESVLWSFICQITSALKTIHSAGLVCRVIHPSKILLTGKNRIRMNGVGIFDVVNFDTPRILAQYQHEDLLLFGRLILTLACRSAQSTTTTNLSKSIEYVSNQYSKELYNLIVYLLTKPVINLPNIDEVVLMISGRLLQENNYLHTYTDDLETELSKEYENGRLFRLVTKLGFINER--PLYDMDPRWSETGDRYLIKLFR 675          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|1173958516|gb|OQS04864.1| (hypothetical protein THRCLA_02937, partial [Thraustotheca clavata])

HSP 1 Score: 246.899 bits (629), Expect = 4.274e-70
Identity = 144/374 (38.50%), Postives = 214/374 (57.22%), Query Frame = 0
Query:  260 WSFGGSSLPAPPRMTLQR----MGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKA----RGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKT--LAELQTEDLAMLGRLILTLATRTLPTP-QSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            ++   S  P+ P +T++R    M +   LR+    +  D  R + P D RYKEIP  FH  +PLD         R  AG+FGYP+  YKV+S  DGR YALRR ++VR+TP I   A+E W+++ HPN++ L + FI HG ALFFL EY+  AQS+  ++V  S   S        E  LWS +TQL  A+RA+H    AC++++   +L+T+  R+R+   GV+DVLE +T K+  +  LQ ED+A +G+++L++  R   TP  ++   L Q  Q YS  L  +   L       +V  L   +  + ++ELD Q +  D+LE  L+ EY++GR+  L LKL  +  R E     D +W+ETG RY+LKLF+
Sbjct:   81 YAASASLTPSSPIVTMRRSLASMALAPTLRRQLDAEHEDMLRQVHPSDERYKEIPSQFHCMWPLDAQDDGNLFHRNVAGSFGYPTHCYKVISETDGRTYALRRVENVRTTPGITQQAVEKWKKVNHPNVVPLHRAFISHG-ALFFLSEYYANAQSLYSKFVQGSDSAS--------ETFLWSVLTQLCGALRAIHGQNIACQVVNTRRLLLTSHNRVRISGTGVLDVLEYDTSKSKRVESLQQEDIANVGKVVLSIGCRHDITPATNISDLLGQFAQSYSANLFEIVKSLVQNE-CTTVQSLGIAVHDHTMNELDNQLSLTDELESQLACEYQNGRMLLLMLKLGLINERPEF--NMDSSWSETGDRYLLKLFR 442          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|831761171|ref|XP_012750175.1| (hypothetical protein SAMD00019534_100820 [Acytostelium subglobosum LB1] >gi|735850807|dbj|GAM26907.1| hypothetical protein SAMD00019534_100820 [Acytostelium subglobosum LB1])

HSP 1 Score: 247.284 bits (630), Expect = 4.582e-69
Identity = 137/360 (38.06%), Postives = 212/360 (58.89%), Query Frame = 0
Query:  275 LQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPP---GFHHAYPLDDAQKARGTAGA-FGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQH----GNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQ--SLGAALAQVRQQYSPELHALSLQLCSKP--GLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            L    + + LRQ  L + L +  +L P+DPR + IPP    +H  YPLD ++ AR   G  FGYP+  YK +S  DG  Y +RR +  R + +    A ++WR IQHPNI+ L ++F+       N+LFF +EYHPG++++  +Y+      SGA  S   E +LWSF+ Q+VSA++AVH+A   CR++HP+ +L+T   R+R+   G+ DV+  ++ K +A+L  EDL + GRLIL+LA ++  +    +L   +   + QYS E   L + L +KP   L ++ +++ L+    + E    ++  DDLE  L+ E E+GRLFRL  KL  +  R  + E  D  W+ETG RY+LKLF+
Sbjct:  240 LSSFFMSDTLRQDLLKQKLMQYTTLDPNDPRLESIPPMLHKYHSLYPLD-SETARDKVGVMFGYPTSVYKAISTTDGLPYVIRRVEGFRLSNEFTLQAADSWRTIQHPNIVSLKEIFVSKEFGDNNSLFFSYEYHPGSETLETKYL----TQSGANIS---ESILWSFICQIVSALKAVHSAGLVCRVIHPSKILLTGKNRIRINGVGIFDVVNFDSPKNVAQLHHEDLVLFGRLILSLACKSAMSANNTNLNKWIDFTQSQYSKEFTNLLIFLLTKPTVNLPTIDDVIQLIGPRLVQENAYLHSYTDDLETELTKEIENGRLFRLLAKLGFINERP-SFEAVDSKWSETGDRYLLKLFR 590          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|676397233|ref|XP_009041894.1| (hypothetical protein AURANDRAFT_72726 [Aureococcus anophagefferens] >gi|323447505|gb|EGB03423.1| hypothetical protein AURANDRAFT_72726 [Aureococcus anophagefferens])

HSP 1 Score: 241.891 bits (616), Expect = 6.809e-68
Identity = 153/368 (41.58%), Postives = 207/368 (56.25%), Query Frame = 0
Query:  278 MGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLD-DAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQA-------ACRMLHPNHVLVTTGARLRLGCAGVVDVLESETR--------KTLAELQTEDLAMLGRLILTLATRTLP----TPQSLGA----ALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLF 621
            +GVPE LR     +  D  R L PDD RY EIPP +  A+PLD D +  R  AG+FGYPSV YKV+    G  YALRR D  R++PK  +     WR ++H N+I L + F+ H  A +FLHEY P A+S+ + Y       +G  PS +PE  LWS++ QL++A+R +HA          ACR L  + +LVT   R+RLG  GVVDVLE++ R        KT AE+  +D+  LG ++L LATR L     TPQ+  A    A  +  + YS E++AL  +L +KP   +VF L  +LS  A DELD  Y   D  EG  S E  +GRL R+ L ++     +E   G    W+E+G RY+L LF
Sbjct:  134 LGVPENLRHHVESQSHDMLRQLEPDDERYLEIPPEYGAAWPLDFDERTTRNIAGSFGYPSVMYKVIDRRSGAPYALRRVDGARASPKAASATQTRWRSVRHANLIPLKRAFV-HSGATYFLHEYCPCARSLLEIYFPPCSDSTGM-PS-VPESTLWSYLLQLLAALRVIHATTGNDTIGSQACRTLGLSRILVTGNTRIRLGNVGVVDVLEADMRNNPCAGKSKTAAEI--DDVIALGHVMLALATRALSDGSCTPQNELARYQYAYYKGTRVYSREIYALISELLTKPP--TVFALCDMLSGRAFDELDATYQCVDCYEGLASAEVGAGRLLRVMLHVSSALYGSEKQAGS--VWSESGERYLLLLF 492          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|470246952|ref|XP_004366629.1| (hypothetical protein DFA_04221 [Dictyostelium fasciculatum] >gi|328870350|gb|EGG18725.1| hypothetical protein DFA_04221 [Dictyostelium fasciculatum])

HSP 1 Score: 242.662 bits (618), Expect = 2.140e-67
Identity = 132/364 (36.26%), Postives = 205/364 (56.32%), Query Frame = 0
Query:  272 RMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPP---GFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQH----GNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRT--LPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLL----SVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            R  L    + E LRQ  L +      +L P+DPR K IPP    +H  YPLD           FGYP+  YK +S  DG  YA+RR +  R + +    A +TWR IQHP+I+ L ++F+       +++FF +E+HPG++++  +Y+ +  G  G     L E +LWSF+ QL SA++ +H+    CR++HP+ +L+T   R+R+   G+ DV+  +T + LA+ Q EDL + GRL+L+LA R+    T  +L  ++  +  QYS E   L + L SKP       ++ ++V +++   L E    ++  D+LE  L+ E E+GRLFRL +KL  +  R       DP W+ETG RY+LKLF+
Sbjct:  241 RRYLNSFFMSESLRQDLLKQKSLLYATLDPNDPRMKNIPPILHKYHSLYPLDSETSRDKVGMMFGYPTSVYKAISTNDGYPYAIRRVEGFRLSSEFALQAADTWRNIQHPSIVSLKEIFVSKEFGDNSSIFFTYEFHPGSETLESKYL-TQNGSGGI----LNEAVLWSFICQLTSALKLIHSNGLVCRVIHPSKILLTGKNRIRINGVGIFDVVNFDTPRNLAQFQHEDLVIFGRLLLSLACRSAVASTNNNLSKSIEFISSQYSKEFKNLVIFLLSKPQPNMPPPTIDDIVSMIAPRLLQENTYLHSYTDELETELTKEIENGRLFRLMVKLGYINERPSF--DLDPRWSETGDRYLLKLFR 597          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|1173933611|gb|OQR85276.1| (hypothetical protein ACHHYP_12005 [Achlya hypogyna])

HSP 1 Score: 234.958 bits (598), Expect = 1.191e-65
Identity = 145/372 (38.98%), Postives = 213/372 (57.26%), Query Frame = 0
Query:  260 WSFGGSSLPAPPRMTLQR----MGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLD--DAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKT--LAELQTEDLAMLGRLILTLAT-RTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            ++   S  P+ P +T +R    M +   +R+    +  D  R + P D RYKEIP  FH  +PLD  D    R  AG+FGYP+  YKV+S  DGR YALRR ++VR+TP I   A++ W+R+ H +I+ L + F+ HG ALFFL E++P A S+  +++      S        E  LWS + QL  A+RA H A  AC+++H   +L+T   R+RL   GV+DVLE +T K+  +  LQ ED+A +G+++L++   + +     L   LAQ  + YS EL A+   L  +  + +V EL   L  +   ELD QY+ AD+LE  LS EY++GR+  L LKL  +  R +     D +W ETG RY+LKLF+
Sbjct:   81 YAASASVTPSSPIVTTRRSLASMALAPTIRRQLDAEHEDMLRQVHPSDERYKEIPSQFHCMWPLDAKDDLFHRNVAGSFGYPTHCYKVISETDGRTYALRRVENVRTTPAITQQAVDKWKRVVHSSIVPLHRAFVSHG-ALFFLSEFYPTAVSLHTKFLVEQASAS--------EAFLWSLLVQLSGALRAAHRADLACQVVHARRLLITGHNRVRLSGTGVLDVLEYDTSKSKRVEALQQEDVANVGKVVLSIGVHQEISAATPLVDLLAQFEKAYSAELTAVVRALVLQE-IKTVKELAVELLDHTQTELDAQYSLADELEAQLSAEYQNGRMLLLMLKLGLINERPDF--NLDSSWAETGDRYLLKLFR 440          
BLAST of EWM27769.1 vs. NCBI_GenBank
Match: gi|669167254|ref|XP_008619189.1| (hypothetical protein SDRG_14812 [Saprolegnia diclina VS20] >gi|530729128|gb|EQC27370.1| hypothetical protein SDRG_14812 [Saprolegnia diclina VS20])

HSP 1 Score: 235.728 bits (600), Expect = 1.699e-65
Identity = 144/372 (38.71%), Postives = 210/372 (56.45%), Query Frame = 0
Query:  260 WSFGGSSLPAPPRMTLQR----MGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLD--DAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKT--LAELQTEDLAMLGRLILTLATR-TLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622
            ++   S +P+ P +T +R    M +   +R+    +  D  R + P D RYKEIP  FH  +PLD  D    R  AG+FGYPS  YKV+S  DGR YALRR ++VR+TP I   A++ W+++ H N++ L + F+ HG ALFFL EY+P A S+  +Y  S      +      E  LWS +TQ+  A+RA+H    AC+ +    +LVT   R+R+   GV+DVLE +T K+  +  LQ +DL  LG+++L+L  R  +    ++   LAQ    +S EL A+   L  +    S  +L  +L      ELD QY+ AD+LE  LS EY++GR+  L LKL  +  R +     D +W ETG RY+LKLF+
Sbjct:  129 YAASASVIPSSPIVTTRRSLASMALAPTVRRQLDAEHEDMLRQVHPSDERYKEIPSQFHCMWPLDVQDDALHRNVAGSFGYPSHCYKVISETDGRTYALRRVENVRTTPGITQQAVDKWKKVVHANVVPLHRAFVSHG-ALFFLSEYYPTATSLHAKYFGSQASSVAS------EAFLWSLLTQVTGALRAIHRHDMACQAIALRRLLVTGHNRVRISGTGVLDVLEYDTSKSKRVEALQQDDLVNLGKVVLSLGVRQEMSATSNVSDLLAQFATTFSDELTAVVRGLTLQ-STTSANDLALMLFDRTQAELDTQYSLADELEAQLSSEYQNGRMLLLMLKLGLINERPDF--NLDSSWAETGDRYLLKLFR 490          
The following BLAST results are available for this feature:
BLAST of EWM27769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110051|gb|EWM27769.1|0.000e+0100.00pab-dependent poly -specific ribonuclease subunit ... [more]
gi|553188307|ref|XP_005854773.1|0.000e+099.68PAB-dependent poly(A)-specific ribonuclease subuni... [more]
gi|299473543|emb|CBN77938.1|1.254e-8447.27Poly(A) ribonuclease subunit [Ectocarpus siliculos... [more]
gi|288559132|sp|P0CD65.1|PAN3_DICDI5.190e-7138.46RecName: Full=PAB-dependent poly(A)-specific ribon... [more]
gi|1173958516|gb|OQS04864.1|4.274e-7038.50hypothetical protein THRCLA_02937, partial [Thraus... [more]
gi|831761171|ref|XP_012750175.1|4.582e-6938.06hypothetical protein SAMD00019534_100820 [Acytoste... [more]
gi|676397233|ref|XP_009041894.1|6.809e-6841.58hypothetical protein AURANDRAFT_72726 [Aureococcus... [more]
gi|470246952|ref|XP_004366629.1|2.140e-6736.26hypothetical protein DFA_04221 [Dictyostelium fasc... [more]
gi|1173933611|gb|OQR85276.1|1.191e-6538.98hypothetical protein ACHHYP_12005 [Achlya hypogyna... [more]
gi|669167254|ref|XP_008619189.1|1.699e-6538.71hypothetical protein SDRG_14812 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2912rna2912Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications