EWM30398.1, cds290 (CDS) Nannochloropsis gaditana

Overview
NameEWM30398.1
Unique Namecds290
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:722635..722802 -
Alignment locationCM002455.1:721904..722554 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30398.1
ProductMitochondrial biogenesis protein AIM24
Orig transcript idgnl|cribi|Naga_100026g26.10652.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:722635..722802 -
CM002455.1supercontigCM002455.1:721904..722554 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR016031Trp_RNA-bd_attenuator-like_dom
IPR002838AIM24
Homology
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|585113058|gb|EWM30398.1| (Mitochondrial biogenesis protein AIM24 [Nannochloropsis gaditana])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MHAVPPVPAAPAVDGQPLQPNVPTESQEETPPAYLIIGGDDGGNQILQFHLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEGRMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSLNMLAFDGQEF 272
            MHAVPPVPAAPAVDGQPLQPNVPTESQEETPPAYLIIGGDDGGNQILQFHLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEGRMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSLNMLAFDGQEF
Sbjct:    1 MHAVPPVPAAPAVDGQPLQPNVPTESQEETPPAYLIIGGDDGGNQILQFHLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEGRMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSLNMLAFDGQEF 272          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|950996050|ref|XP_014505595.1| (PREDICTED: uncharacterized protein LOC106765470 [Vigna radiata var. radiata])

HSP 1 Score: 82.4185 bits (202), Expect = 8.022e-15
Identity = 65/217 (29.95%), Postives = 106/217 (48.85%), Query Frame = 0
Query:   50 HLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
             +   Q  F  T    +  N G+   GF+G+AAP+  +ILPI +      +L Q +++L S   V    +  Q G N   + + F+ + ++    A     F+ A GS+V+ NL +G+ + V +S+IVAVT  V V +   G   R + G + A  +    L+ GPG V++ SLP  R  +R+  A    N+   P   I + V  F A + ++ SL
Sbjct:   70 EVGVWQWLFGKTITSIVLHNSGTSE-GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNIVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSTVNVQIKYNGPARRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|571532223|ref|XP_006600213.1| (PREDICTED: uncharacterized protein LOC100809243 isoform X1 [Glycine max] >gi|571532227|ref|XP_006600214.1| PREDICTED: uncharacterized protein LOC100809243 isoform X1 [Glycine max] >gi|734341668|gb|KHN09836.1| hypothetical protein glysoja_017137 [Glycine soja] >gi|947054707|gb|KRH04160.1| hypothetical protein GLYMA_17G143400 [Glycine max] >gi|947054708|gb|KRH04161.1| hypothetical protein GLYMA_17G143400 [Glycine max] >gi|947054709|gb|KRH04162.1| hypothetical protein GLYMA_17G143400 [Glycine max])

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-14
Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+AAP+  +ILPI +      +L Q +++L S   V    +  Q G N   + + F+ + ++    A     F+ A GS+V+ NL +G+ + V +S+IVAVT  V V +   G   R + G + A  +    L+ GPG V++ SLP  R  +R+  A    N+   P   I + V  F A + ++ SL
Sbjct:   95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSTVNVQIKYNGPARRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|388508964|gb|AFK42548.1| (unknown [Lotus japonicus])

HSP 1 Score: 81.2629 bits (199), Expect = 1.897e-14
Identity = 60/188 (31.91%), Postives = 92/188 (48.94%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+AAP+  +ILPI +      +L Q +++L S   V       Q G N       R +    S +G   F+ A GS+V+ NL +G+ + V +S IVAVT  V V + + G   R + G +    +    L+ GPG V++ SLP  R  +R+  A    N+   P   I + V    A + +L SL
Sbjct:   95 GFVGIAAPYFARILPIDLAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVAG-AERFLRQKLSGQGVA-FILAGGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|363808166|ref|NP_001242226.1| (uncharacterized protein LOC100799063 [Glycine max] >gi|255639877|gb|ACU20231.1| unknown [Glycine max] >gi|255640131|gb|ACU20356.1| unknown [Glycine max])

HSP 1 Score: 81.2629 bits (199), Expect = 1.994e-14
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+AAP+  +ILPI +      +L Q +++L S   V    +  Q G N   + + F+ + ++    A     F+ A GS+V+ NL +G+ + V +S+IVAVT  V + +   G   R + G + A  +    ++ GPG V++ SLP  R  +R+  A    N+   P   I + V  F A + ++ SL
Sbjct:   95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTA----VLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFIQIAVFFFLACVVIVSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|571453217|ref|XP_006579422.1| (PREDICTED: uncharacterized protein LOC100799063 isoform X1 [Glycine max] >gi|571453221|ref|XP_006579424.1| PREDICTED: uncharacterized protein LOC100799063 isoform X1 [Glycine max] >gi|955318933|ref|XP_014630827.1| PREDICTED: uncharacterized protein LOC100799063 isoform X1 [Glycine max] >gi|947109127|gb|KRH57453.1| hypothetical protein GLYMA_05G061700 [Glycine max] >gi|947109128|gb|KRH57454.1| hypothetical protein GLYMA_05G061700 [Glycine max])

HSP 1 Score: 80.8777 bits (198), Expect = 3.126e-14
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+AAP+  +ILPI +      +L Q +++L S   V    +  Q G N   + + F+ + ++    A     F+ A GS+V+ NL +G+ + V +S+IVAVT  V + +   G   R + G + A  +    ++ GPG V++ SLP  R  +R+  A    N+   P   I + V  F A + ++ SL
Sbjct:   95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTA----VLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|1044534434|ref|XP_017415519.1| (PREDICTED: uncharacterized protein LOC108326471 [Vigna angularis] >gi|1044534436|ref|XP_017415597.1| PREDICTED: uncharacterized protein LOC108326471 [Vigna angularis] >gi|1044534438|ref|XP_017415667.1| PREDICTED: uncharacterized protein LOC108326471 [Vigna angularis] >gi|920688579|gb|KOM32562.1| hypothetical protein LR48_Vigan01g211800 [Vigna angularis] >gi|965659413|dbj|BAT75832.1| hypothetical protein VIGAN_01375600 [Vigna angularis var. angularis])

HSP 1 Score: 80.4925 bits (197), Expect = 3.631e-14
Identity = 59/191 (30.89%), Postives = 98/191 (51.31%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+AAP+  +ILPI +      +L Q +++L S   V    +  Q G N   + + F+ + ++    A     F+ A GS+V+ NL +G+ + V +S+IVAVT  V + +   G   R + G + A  +    L+ GPG V++ SLP  R  +R+  A    N+   P   I + V  F A + ++ SL
Sbjct:   95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVSDVKVSNIVDQRGRNIVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSTVNIQIKYNGPVRRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|734427233|gb|KHN44087.1| (hypothetical protein glysoja_031687 [Glycine soja])

HSP 1 Score: 80.1073 bits (196), Expect = 3.788e-14
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+AAP+  +ILPI +      +L Q +++L S   V    +  Q G N   + + F+ + ++    A     F+ A GS+V+ NL +G+ + V +S+IVAVT  V + +   G   R + G + A  +    ++ GPG V++ SLP  R  +R+  A    N+   P   I + V  F A + ++ SL
Sbjct:   58 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTA----VLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 239          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|388499702|gb|AFK37917.1| (unknown [Lotus japonicus])

HSP 1 Score: 80.1073 bits (196), Expect = 6.540e-14
Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 0
Query:   76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            GF+G+ AP+  +ILPI +      +L Q +++L S   V       Q G N       R +    S +G   F+ A GS+V+ NL +G+ + V +S IVAVT  V V + + G   R + G +    +    L+ GPG V++ SLP  R  +R+  A    N+   P   I + V    A + +L SL
Sbjct:   95 GFVGIVAPYFARILPIDLAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVAG-AERFLRQKLSGQGVA-FILAGGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSL 276          
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|1011995944|ref|XP_015959088.1| (uncharacterized protein LOC107482982 isoform X4 [Arachis duranensis])

HSP 1 Score: 80.1073 bits (196), Expect = 6.540e-14
Identity = 59/211 (27.96%), Postives = 102/211 (48.34%), Query Frame = 0
Query:   56 KFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVNT---EQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
            ++ F  +   I+  +  +  GF+G+AAP+  +ILPI +      +L Q +++L S   V       Q G N     + F+ + ++    A     F+ A GS+++ NL  G+ + V +S IVAVT  V V +   G   R + G + A  +    L+ GPG V++ SLP  R  +R+  +    N+   P   I + +  F A + ++ SL
Sbjct:   75 QWLFGKNISSIFLRNSGQSDGFVGIAAPYFARILPIDLASFNGEILCQPDAFLCSVNDVKVNNTIDQRGRNIVAGAEGFLRQKISGQGLA-----FILAGGSVLQKNLESGEVLAVDVSCIVAVTSTVNVQIKYNGPPRRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPKFLIQIAIFFFLAYVVIVSSL 276          
The following BLAST results are available for this feature:
BLAST of EWM30398.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113058|gb|EWM30398.1|0.000e+0100.00Mitochondrial biogenesis protein AIM24 [Nannochlor... [more]
gi|950996050|ref|XP_014505595.1|8.022e-1529.95PREDICTED: uncharacterized protein LOC106765470 [V... [more]
gi|571532223|ref|XP_006600213.1|1.222e-1431.41PREDICTED: uncharacterized protein LOC100809243 is... [more]
gi|388508964|gb|AFK42548.1|1.897e-1431.91unknown [Lotus japonicus][more]
gi|363808166|ref|NP_001242226.1|1.994e-1430.37uncharacterized protein LOC100799063 [Glycine max]... [more]
gi|571453217|ref|XP_006579422.1|3.126e-1430.37PREDICTED: uncharacterized protein LOC100799063 is... [more]
gi|1044534434|ref|XP_017415519.1|3.631e-1430.89PREDICTED: uncharacterized protein LOC108326471 [V... [more]
gi|734427233|gb|KHN44087.1|3.788e-1430.37hypothetical protein glysoja_031687 [Glycine soja][more]
gi|388499702|gb|AFK37917.1|6.540e-1431.38unknown [Lotus japonicus][more]
gi|1011995944|ref|XP_015959088.1|6.540e-1427.96uncharacterized protein LOC107482982 isoform X4 [A... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna290rna290Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications