EWM30398.1, cds290 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|585113058|gb|EWM30398.1| (Mitochondrial biogenesis protein AIM24 [Nannochloropsis gaditana]) HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query: 1 MHAVPPVPAAPAVDGQPLQPNVPTESQEETPPAYLIIGGDDGGNQILQFHLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEGRMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSLNMLAFDGQEF 272
MHAVPPVPAAPAVDGQPLQPNVPTESQEETPPAYLIIGGDDGGNQILQFHLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEGRMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSLNMLAFDGQEF
Sbjct: 1 MHAVPPVPAAPAVDGQPLQPNVPTESQEETPPAYLIIGGDDGGNQILQFHLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEGRMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSLNMLAFDGQEF 272
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|950996050|ref|XP_014505595.1| (PREDICTED: uncharacterized protein LOC106765470 [Vigna radiata var. radiata]) HSP 1 Score: 82.4185 bits (202), Expect = 8.022e-15 Identity = 65/217 (29.95%), Postives = 106/217 (48.85%), Query Frame = 0
Query: 50 HLAAGQKFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
+ Q F T + N G+ GF+G+AAP+ +ILPI + +L Q +++L S V + Q G N + + F+ + ++ A F+ A GS+V+ NL +G+ + V +S+IVAVT V V + G R + G + A + L+ GPG V++ SLP R +R+ A N+ P I + V F A + ++ SL
Sbjct: 70 EVGVWQWLFGKTITSIVLHNSGTSE-GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNIVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSTVNVQIKYNGPARRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|571532223|ref|XP_006600213.1| (PREDICTED: uncharacterized protein LOC100809243 isoform X1 [Glycine max] >gi|571532227|ref|XP_006600214.1| PREDICTED: uncharacterized protein LOC100809243 isoform X1 [Glycine max] >gi|734341668|gb|KHN09836.1| hypothetical protein glysoja_017137 [Glycine soja] >gi|947054707|gb|KRH04160.1| hypothetical protein GLYMA_17G143400 [Glycine max] >gi|947054708|gb|KRH04161.1| hypothetical protein GLYMA_17G143400 [Glycine max] >gi|947054709|gb|KRH04162.1| hypothetical protein GLYMA_17G143400 [Glycine max]) HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-14 Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+AAP+ +ILPI + +L Q +++L S V + Q G N + + F+ + ++ A F+ A GS+V+ NL +G+ + V +S+IVAVT V V + G R + G + A + L+ GPG V++ SLP R +R+ A N+ P I + V F A + ++ SL
Sbjct: 95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSTVNVQIKYNGPARRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|388508964|gb|AFK42548.1| (unknown [Lotus japonicus]) HSP 1 Score: 81.2629 bits (199), Expect = 1.897e-14 Identity = 60/188 (31.91%), Postives = 92/188 (48.94%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+AAP+ +ILPI + +L Q +++L S V Q G N R + S +G F+ A GS+V+ NL +G+ + V +S IVAVT V V + + G R + G + + L+ GPG V++ SLP R +R+ A N+ P I + V A + +L SL
Sbjct: 95 GFVGIAAPYFARILPIDLAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVAG-AERFLRQKLSGQGVA-FILAGGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|363808166|ref|NP_001242226.1| (uncharacterized protein LOC100799063 [Glycine max] >gi|255639877|gb|ACU20231.1| unknown [Glycine max] >gi|255640131|gb|ACU20356.1| unknown [Glycine max]) HSP 1 Score: 81.2629 bits (199), Expect = 1.994e-14 Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+AAP+ +ILPI + +L Q +++L S V + Q G N + + F+ + ++ A F+ A GS+V+ NL +G+ + V +S+IVAVT V + + G R + G + A + ++ GPG V++ SLP R +R+ A N+ P I + V F A + ++ SL
Sbjct: 95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTA----VLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFIQIAVFFFLACVVIVSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|571453217|ref|XP_006579422.1| (PREDICTED: uncharacterized protein LOC100799063 isoform X1 [Glycine max] >gi|571453221|ref|XP_006579424.1| PREDICTED: uncharacterized protein LOC100799063 isoform X1 [Glycine max] >gi|955318933|ref|XP_014630827.1| PREDICTED: uncharacterized protein LOC100799063 isoform X1 [Glycine max] >gi|947109127|gb|KRH57453.1| hypothetical protein GLYMA_05G061700 [Glycine max] >gi|947109128|gb|KRH57454.1| hypothetical protein GLYMA_05G061700 [Glycine max]) HSP 1 Score: 80.8777 bits (198), Expect = 3.126e-14 Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+AAP+ +ILPI + +L Q +++L S V + Q G N + + F+ + ++ A F+ A GS+V+ NL +G+ + V +S+IVAVT V + + G R + G + A + ++ GPG V++ SLP R +R+ A N+ P I + V F A + ++ SL
Sbjct: 95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTA----VLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|1044534434|ref|XP_017415519.1| (PREDICTED: uncharacterized protein LOC108326471 [Vigna angularis] >gi|1044534436|ref|XP_017415597.1| PREDICTED: uncharacterized protein LOC108326471 [Vigna angularis] >gi|1044534438|ref|XP_017415667.1| PREDICTED: uncharacterized protein LOC108326471 [Vigna angularis] >gi|920688579|gb|KOM32562.1| hypothetical protein LR48_Vigan01g211800 [Vigna angularis] >gi|965659413|dbj|BAT75832.1| hypothetical protein VIGAN_01375600 [Vigna angularis var. angularis]) HSP 1 Score: 80.4925 bits (197), Expect = 3.631e-14 Identity = 59/191 (30.89%), Postives = 98/191 (51.31%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+AAP+ +ILPI + +L Q +++L S V + Q G N + + F+ + ++ A F+ A GS+V+ NL +G+ + V +S+IVAVT V + + G R + G + A + L+ GPG V++ SLP R +R+ A N+ P I + V F A + ++ SL
Sbjct: 95 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVSDVKVSNIVDQRGRNIVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSTVNIQIKYNGPVRRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|734427233|gb|KHN44087.1| (hypothetical protein glysoja_031687 [Glycine soja]) HSP 1 Score: 80.1073 bits (196), Expect = 3.788e-14 Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVN---TEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+AAP+ +ILPI + +L Q +++L S V + Q G N + + F+ + ++ A F+ A GS+V+ NL +G+ + V +S+IVAVT V + + G R + G + A + ++ GPG V++ SLP R +R+ A N+ P I + V F A + ++ SL
Sbjct: 58 GFVGIAAPYFARILPIDLAMFNGEILCQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLA-----FILAGGSVVQKNLEIGEVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTA----VLTGPGIVFIQSLPFHRFSQRIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSL 239
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|388499702|gb|AFK37917.1| (unknown [Lotus japonicus]) HSP 1 Score: 80.1073 bits (196), Expect = 6.540e-14 Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 0
Query: 76 GFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVNTEQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
GF+G+ AP+ +ILPI + +L Q +++L S V Q G N R + S +G F+ A GS+V+ NL +G+ + V +S IVAVT V V + + G R + G + + L+ GPG V++ SLP R +R+ A N+ P I + V A + +L SL
Sbjct: 95 GFVGIVAPYFARILPIDLAMFNGGILCQPDAFLCSVNDVKVSNTFDQRGQNVVAG-AERFLRQKLSGQGVA-FILAGGSVVQKNLEIGEVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTA----LLTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSL 276
BLAST of EWM30398.1 vs. NCBI_GenBank
Match: gi|1011995944|ref|XP_015959088.1| (uncharacterized protein LOC107482982 isoform X4 [Arachis duranensis]) HSP 1 Score: 80.1073 bits (196), Expect = 6.540e-14 Identity = 59/211 (27.96%), Postives = 102/211 (48.34%), Query Frame = 0
Query: 56 KFFFFTDPDEIYQNDGSEPLGFLGLAAPHAGKILPIKVEG-RMALLLQNESYLASTGSVSHRRMCLQAGVNT---EQLFMTRVVASPSSARGATVFLHAPGSIVETNLGLGQKMYVSISAIVAVTEGVTVNLSSTGAQARPLSGAEWARKSQSICLVQGPGTVYVSSLPVARQVRRLLSASRPENLPLLPLLRIFLMVLLFAASLAVLHSL 262
++ F + I+ + + GF+G+AAP+ +ILPI + +L Q +++L S V Q G N + F+ + ++ A F+ A GS+++ NL G+ + V +S IVAVT V V + G R + G + A + L+ GPG V++ SLP R +R+ + N+ P I + + F A + ++ SL
Sbjct: 75 QWLFGKNISSIFLRNSGQSDGFVGIAAPYFARILPIDLASFNGEILCQPDAFLCSVNDVKVNNTIDQRGRNIVAGAEGFLRQKISGQGLA-----FILAGGSVLQKNLESGEVLAVDVSCIVAVTSTVNVQIKYNGPPRRTMFGGDNAVTA----LLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRENPKFLIQIAIFFFLAYVVIVSSL 276 The following BLAST results are available for this feature:
BLAST of EWM30398.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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