EWM27808.1, cds2874 (CDS) Nannochloropsis gaditana

Overview
NameEWM27808.1
Unique Namecds2874
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:156315..156391 -
Alignment locationCM002460.1:156073..156161 -
Alignment locationCM002460.1:155847..155935 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27808.1
Productmulticopper oxidase type 2
Orig transcript idgnl|cribi|Naga_100149g1.2657.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:156315..156391 -
CM002460.1supercontigCM002460.1:156073..156161 -
CM002460.1supercontigCM002460.1:155847..155935 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0005507copper ion binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR002355Cu_oxidase_Cu_BS
IPR008972Cupredoxin
IPR011706Cu-oxidase_2
Homology
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|585110109|gb|EWM27808.1| (multicopper oxidase type 2 [Nannochloropsis gaditana])

HSP 1 Score: 175.252 bits (443), Expect = 1.162e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEIYDPEKEKAGMVAREGEYPGDV 84
            MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEIYDPEKEKAGMVAREGEYPGDV
Sbjct:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEIYDPEKEKAGMVAREGEYPGDV 84          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|298704886|emb|CBJ28403.1| (Multicopper oxidase, type 1 is implicated in celullar iron transport [Ectocarpus siliculosus])

HSP 1 Score: 88.1965 bits (217), Expect = 1.282e-18
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    4 GEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEIYD 65
            G+G D++VGDWRD+IS+P      G VTIRWRADD+TG+A AHCHIF HSDTGM   FEI+D
Sbjct:  376 GDGPDWSVGDWRDTISIPTP----GNVTIRWRADDFTGEAVAHCHIFGHSDTGMMMNFEIFD 433          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|676382641|ref|XP_009034599.1| (hypothetical protein AURANDRAFT_71033 [Aureococcus anophagefferens] >gi|323455174|gb|EGB11043.1| hypothetical protein AURANDRAFT_71033 [Aureococcus anophagefferens])

HSP 1 Score: 84.7297 bits (208), Expect = 2.439e-17
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEI 63
            +SHGEGVDYAVGDWRD+I+LP      G+V IR+RA DY G + AHCHIF+HSD GM + F+I
Sbjct:  502 LSHGEGVDYAVGDWRDTITLPT----PGWVKIRFRAADYDGPSLAHCHIFSHSDLGMQHKFDI 560          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|669151730|ref|XP_008611427.1| (hypothetical protein SDRG_07376 [Saprolegnia diclina VS20] >gi|530736901|gb|EQC35143.1| hypothetical protein SDRG_07376 [Saprolegnia diclina VS20])

HSP 1 Score: 79.7221 bits (195), Expect = 1.166e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEI 63
            M+HG G+DY+VGDWRD+I+LP     GG VTIR+R  D+TG   AHCHI  H+D GM+   EI
Sbjct:  495 MTHGHGLDYSVGDWRDTITLPY----GGNVTIRFRPMDFTGLVAAHCHILGHADVGMALLVEI 553          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|953500276|emb|CEG38917.1| (multicopper oxidase [Plasmopara halstedii])

HSP 1 Score: 79.337 bits (194), Expect = 1.679e-15
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEI 63
            MSHG GVDY +GDWRD IS+P      G VTIR+R +D+TG   AHCHI  HSD GM   F+I
Sbjct:  603 MSHGHGVDYEIGDWRDVISIPT----PGDVTIRFRPEDFTGFVAAHCHILGHSDAGMIAGFDI 661          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|813199252|ref|XP_012209197.1| (hypothetical protein SPRG_14633 [Saprolegnia parasitica CBS 223.65] >gi|641525659|gb|KDO20094.1| hypothetical protein SPRG_14633 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 79.337 bits (194), Expect = 2.069e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEI 63
            M+HG G+DY+VGDWRD+I+LP     GG VTIR+R  D+TG   AHCHI  H+D GM+   EI
Sbjct:  489 MTHGHGLDYSVGDWRDTITLPY----GGNVTIRFRPLDFTGLVAAHCHILGHADVGMALLVEI 547          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|1173936338|gb|OQR87300.1| (hypothetical protein ACHHYP_09146 [Achlya hypogyna])

HSP 1 Score: 78.5666 bits (192), Expect = 3.319e-15
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMSYTFEI 63
            +SHG GVD++VGDWRD+I+LP     GG  TIR+R  D+TG   AHCHI  HSD GM    EI
Sbjct: 1048 LSHGHGVDHSVGDWRDTITLPF----GGTATIRFRPTDFTGLLAAHCHILGHSDAGMIMLLEI 1106          

HSP 2 Score: 77.7962 bits (190), Expect = 6.626e-15
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGMS 58
            MSHG G+DY+VGDWRD+I+LP     GG  TIR+R  D+TG   AHCHI  H+D GM+
Sbjct:  500 MSHGHGLDYSVGDWRDTITLPY----GGNTTIRFRPTDFTGLVAAHCHILGHADVGMA 553          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|970649674|gb|KUF88881.1| (Multicopper oxidase mco [Phytophthora nicotianae] >gi|970658109|gb|KUF95913.1| hypothetical protein AM588_10007665 [Phytophthora nicotianae])

HSP 1 Score: 78.1814 bits (191), Expect = 5.145e-15
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGM 57
            MSHG GVDY +GDWRD IS+P      G VTIR+R +DYTG   AHCHI  HSD GM
Sbjct:  607 MSHGHGVDYEIGDWRDVISVPT----PGNVTIRFRPEDYTGIVAAHCHILGHSDAGM 659          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|675207623|ref|XP_008912696.1| (hypothetical protein PPTG_16687 [Phytophthora parasitica INRA-310] >gi|568087140|gb|ETN02015.1| hypothetical protein PPTG_16687 [Phytophthora parasitica INRA-310])

HSP 1 Score: 78.1814 bits (191), Expect = 5.145e-15
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGM 57
            MSHG GVDY +GDWRD IS+P      G VTIR+R +DYTG   AHCHI  HSD GM
Sbjct:  607 MSHGHGVDYEIGDWRDVISVPT----PGNVTIRFRPEDYTGIVAAHCHILGHSDAGM 659          
BLAST of EWM27808.1 vs. NCBI_GenBank
Match: gi|567950150|gb|ETK75868.1| (hypothetical protein L915_17597 [Phytophthora parasitica] >gi|567978819|gb|ETL29305.1| hypothetical protein L916_17491 [Phytophthora parasitica] >gi|570940180|gb|ETP05437.1| hypothetical protein F441_17957 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 78.1814 bits (191), Expect = 5.145e-15
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MSHGEGVDYAVGDWRDSISLPLLPAGGGFVTIRWRADDYTGKAPAHCHIFAHSDTGM 57
            MSHG GVDY +GDWRD IS+P      G VTIR+R +DYTG   AHCHI  HSD GM
Sbjct:  607 MSHGHGVDYEIGDWRDVISVPT----PGNVTIRFRPEDYTGIVAAHCHILGHSDAGM 659          
The following BLAST results are available for this feature:
BLAST of EWM27808.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110109|gb|EWM27808.1|1.162e-55100.00multicopper oxidase type 2 [Nannochloropsis gadita... [more]
gi|298704886|emb|CBJ28403.1|1.282e-1866.13Multicopper oxidase, type 1 is implicated in celul... [more]
gi|676382641|ref|XP_009034599.1|2.439e-1763.49hypothetical protein AURANDRAFT_71033 [Aureococcus... [more]
gi|669151730|ref|XP_008611427.1|1.166e-1557.14hypothetical protein SDRG_07376 [Saprolegnia dicli... [more]
gi|953500276|emb|CEG38917.1|1.679e-1558.73multicopper oxidase [Plasmopara halstedii][more]
gi|813199252|ref|XP_012209197.1|2.069e-1557.14hypothetical protein SPRG_14633 [Saprolegnia paras... [more]
gi|1173936338|gb|OQR87300.1|3.319e-1557.14hypothetical protein ACHHYP_09146 [Achlya hypogyna... [more]
gi|970649674|gb|KUF88881.1|5.145e-1563.16Multicopper oxidase mco [Phytophthora nicotianae] ... [more]
gi|675207623|ref|XP_008912696.1|5.145e-1563.16hypothetical protein PPTG_16687 [Phytophthora para... [more]
gi|567950150|gb|ETK75868.1|5.145e-1563.16hypothetical protein L915_17597 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2882rna2882Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications