EWM27813.1, cds2860 (CDS) Nannochloropsis gaditana

Overview
NameEWM27813.1
Unique Namecds2860
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:110528..110674 +
Alignment locationCM002460.1:110826..110897 +
Alignment locationCM002460.1:111178..111329 +

Link to JBrowse

Properties
Property NameValue
End range.
End range111329
Start range110528
Start range.
Protein idEWM27813.1
Productdna binding protein ure-b1
Partialtrue
Orig transcript idgnl|cribi|Naga_102545g1.6.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:110528..110674 +
CM002460.1supercontigCM002460.1:110826..110897 +
CM002460.1supercontigCM002460.1:111178..111329 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|585110118|gb|EWM27813.1| (dna binding protein ure-b1, partial [Nannochloropsis gaditana])

HSP 1 Score: 255.373 bits (651), Expect = 4.195e-86
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 SSLPPSLLLFPSCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEVCSL 124
            SSLPPSLLLFPSCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEVCSL
Sbjct:    1 SSLPPSLLLFPSCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEVCSL 124          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|1214708300|gb|OWZ19598.1| (HECT E3 ubiquitin ligase [Phytophthora megakarya])

HSP 1 Score: 136.346 bits (342), Expect = 1.106e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct: 1610 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANFKPTDAVIRWFWNV 1719          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|970635900|gb|KUF80687.1| (E3 ubiquitin-protein ligase UPL1 [Phytophthora nicotianae])

HSP 1 Score: 135.961 bits (341), Expect = 1.268e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|568014448|gb|ETL88625.1| (hypothetical protein L917_12314 [Phytophthora parasitica] >gi|568044695|gb|ETM41889.1| hypothetical protein L914_12394 [Phytophthora parasitica])

HSP 1 Score: 135.961 bits (341), Expect = 1.268e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|675200697|ref|XP_008909233.1| (hypothetical protein PPTG_14388 [Phytophthora parasitica INRA-310] >gi|568090882|gb|ETN05711.1| hypothetical protein PPTG_14388 [Phytophthora parasitica INRA-310])

HSP 1 Score: 135.961 bits (341), Expect = 1.281e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|567985057|gb|ETL35407.1| (hypothetical protein L916_12477 [Phytophthora parasitica])

HSP 1 Score: 135.961 bits (341), Expect = 1.281e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|970659272|gb|KUF96925.1| (hypothetical protein AM588_10007030 [Phytophthora nicotianae])

HSP 1 Score: 135.961 bits (341), Expect = 1.298e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct:  753 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 862          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|570322645|gb|ETO70593.1| (hypothetical protein F444_12962 [Phytophthora parasitica P1976])

HSP 1 Score: 135.961 bits (341), Expect = 1.306e-34
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E S FG+V++ D++PNGR+VPVTDENKMEY++ +   R+   I++Q +AFL G H LVP +L+AIF  +ELELL  G+P ID+D+LK++TE  ++K +D  I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|1080067634|ref|XP_018576078.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1 isoform X4 [Anoplophora glabripennis])

HSP 1 Score: 135.961 bits (341), Expect = 1.318e-34
Identity = 56/110 (50.91%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E SEFG  +  D++PNGRH+PVT+ENKMEY++ + Q ++T AIK+Q  +FL G +D++P  L++IF   ELELL  GLP++D+D+LK++TE H ++T+  +IQWFW  
Sbjct: 3852 STEISEFGVTETRDLIPNGRHIPVTEENKMEYVRLVCQMKMTGAIKQQLNSFLEGFYDIIPMRLISIFNEQELELLISGLPNVDIDDLKANTEYHKYQTNSLQIQWFWRA 3961          
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|1080067632|ref|XP_018576077.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1 isoform X3 [Anoplophora glabripennis])

HSP 1 Score: 135.961 bits (341), Expect = 1.318e-34
Identity = 56/110 (50.91%), Postives = 83/110 (75.45%), Query Frame = 0
Query:   12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
            S E SEFG  +  D++PNGRH+PVT+ENKMEY++ + Q ++T AIK+Q  +FL G +D++P  L++IF   ELELL  GLP++D+D+LK++TE H ++T+  +IQWFW  
Sbjct: 3855 STEISEFGVTETRDLIPNGRHIPVTEENKMEYVRLVCQMKMTGAIKQQLNSFLEGFYDIIPMRLISIFNEQELELLISGLPNVDIDDLKANTEYHKYQTNSLQIQWFWRA 3964          
The following BLAST results are available for this feature:
BLAST of EWM27813.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110118|gb|EWM27813.1|4.195e-86100.00dna binding protein ure-b1, partial [Nannochlorops... [more]
gi|1214708300|gb|OWZ19598.1|1.106e-3452.73HECT E3 ubiquitin ligase [Phytophthora megakarya][more]
gi|970635900|gb|KUF80687.1|1.268e-3452.73E3 ubiquitin-protein ligase UPL1 [Phytophthora nic... [more]
gi|568014448|gb|ETL88625.1|1.268e-3452.73hypothetical protein L917_12314 [Phytophthora para... [more]
gi|675200697|ref|XP_008909233.1|1.281e-3452.73hypothetical protein PPTG_14388 [Phytophthora para... [more]
gi|567985057|gb|ETL35407.1|1.281e-3452.73hypothetical protein L916_12477 [Phytophthora para... [more]
gi|970659272|gb|KUF96925.1|1.298e-3452.73hypothetical protein AM588_10007030 [Phytophthora ... [more]
gi|570322645|gb|ETO70593.1|1.306e-3452.73hypothetical protein F444_12962 [Phytophthora para... [more]
gi|1080067634|ref|XP_018576078.1|1.318e-3450.91PREDICTED: E3 ubiquitin-protein ligase HUWE1 isofo... [more]
gi|1080067632|ref|XP_018576077.1|1.318e-3450.91PREDICTED: E3 ubiquitin-protein ligase HUWE1 isofo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2868rna2868Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications