EWM27813.1, cds2860 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|585110118|gb|EWM27813.1| (dna binding protein ure-b1, partial [Nannochloropsis gaditana]) HSP 1 Score: 255.373 bits (651), Expect = 4.195e-86 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 SSLPPSLLLFPSCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEVCSL 124
SSLPPSLLLFPSCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEVCSL
Sbjct: 1 SSLPPSLLLFPSCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEVCSL 124
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|1214708300|gb|OWZ19598.1| (HECT E3 ubiquitin ligase [Phytophthora megakarya]) HSP 1 Score: 136.346 bits (342), Expect = 1.106e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 1610 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANFKPTDAVIRWFWNV 1719
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|970635900|gb|KUF80687.1| (E3 ubiquitin-protein ligase UPL1 [Phytophthora nicotianae]) HSP 1 Score: 135.961 bits (341), Expect = 1.268e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|568014448|gb|ETL88625.1| (hypothetical protein L917_12314 [Phytophthora parasitica] >gi|568044695|gb|ETM41889.1| hypothetical protein L914_12394 [Phytophthora parasitica]) HSP 1 Score: 135.961 bits (341), Expect = 1.268e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|675200697|ref|XP_008909233.1| (hypothetical protein PPTG_14388 [Phytophthora parasitica INRA-310] >gi|568090882|gb|ETN05711.1| hypothetical protein PPTG_14388 [Phytophthora parasitica INRA-310]) HSP 1 Score: 135.961 bits (341), Expect = 1.281e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|567985057|gb|ETL35407.1| (hypothetical protein L916_12477 [Phytophthora parasitica]) HSP 1 Score: 135.961 bits (341), Expect = 1.281e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|970659272|gb|KUF96925.1| (hypothetical protein AM588_10007030 [Phytophthora nicotianae]) HSP 1 Score: 135.961 bits (341), Expect = 1.298e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 753 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 862
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|570322645|gb|ETO70593.1| (hypothetical protein F444_12962 [Phytophthora parasitica P1976]) HSP 1 Score: 135.961 bits (341), Expect = 1.306e-34 Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E S FG+V++ D++PNGR+VPVTDENKMEY++ + R+ I++Q +AFL G H LVP +L+AIF +ELELL G+P ID+D+LK++TE ++K +D I+WFW V
Sbjct: 3950 SAEQSNFGKVEVVDLIPNGRNVPVTDENKMEYVKLVTHHRMATGIRQQIDAFLKGFHQLVPPELIAIFNENELELLISGMPEIDIDDLKANTEYANYKPTDSVIRWFWNV 4059
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|1080067634|ref|XP_018576078.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1 isoform X4 [Anoplophora glabripennis]) HSP 1 Score: 135.961 bits (341), Expect = 1.318e-34 Identity = 56/110 (50.91%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E SEFG + D++PNGRH+PVT+ENKMEY++ + Q ++T AIK+Q +FL G +D++P L++IF ELELL GLP++D+D+LK++TE H ++T+ +IQWFW
Sbjct: 3852 STEISEFGVTETRDLIPNGRHIPVTEENKMEYVRLVCQMKMTGAIKQQLNSFLEGFYDIIPMRLISIFNEQELELLISGLPNVDIDDLKANTEYHKYQTNSLQIQWFWRA 3961
BLAST of EWM27813.1 vs. NCBI_GenBank
Match: gi|1080067632|ref|XP_018576077.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1 isoform X3 [Anoplophora glabripennis]) HSP 1 Score: 135.961 bits (341), Expect = 1.318e-34 Identity = 56/110 (50.91%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 12 SCEASEFGEVKLYDVVPNGRHVPVTDENKMEYIQKIAQFRLTNAIKKQTEAFLSGLHDLVPKDLVAIFTPSELELLSCGLPSIDLDNLKSHTELHHWKTSDKEIQWFWEV 121
S E SEFG + D++PNGRH+PVT+ENKMEY++ + Q ++T AIK+Q +FL G +D++P L++IF ELELL GLP++D+D+LK++TE H ++T+ +IQWFW
Sbjct: 3855 STEISEFGVTETRDLIPNGRHIPVTEENKMEYVRLVCQMKMTGAIKQQLNSFLEGFYDIIPMRLISIFNEQELELLISGLPNVDIDDLKANTEYHKYQTNSLQIQWFWRA 3964 The following BLAST results are available for this feature:
BLAST of EWM27813.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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