EWM27830.1, cds2847 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|585110154|gb|EWM27830.1| (atp-dependent rna helicase [Nannochloropsis gaditana]) HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0 Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKIDCERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQVADAVKTRRAERLAAEAAEEKEQEKKEAEKEAATAATAAAASGGPVTAGEGSENAGKGKIRAKKEAKPRRKEPEIEEKGVGKLRGREFNVIGMETMFQLLRCSGFSMKS 399 MTLDEADQLLDAKNKIDCERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQVADAVKTRRAERLAAEAAEEKEQEKKEAEKEAATAATAAAASGGPVTAGEGSENAGKGKIRAKKEAKPRRKEPEIEEKGVGKLRGREFNVIGMETMFQLLRCSGFSMKS Sbjct: 1 MTLDEADQLLDAKNKIDCERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQVADAVKTRRAERLAAEAAEEKEQEKKEAEKEAATAATAAAASGGPVTAGEGSENAGKGKIRAKKEAKPRRKEPEIEEKGVGKLRGREFNVIGMETMFQLLRCSGFSMKS 399
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|1128472136|dbj|GAV52669.1| (hypothetical protein ZYGR_0AG06600 [Zygosaccharomyces rouxii]) HSP 1 Score: 155.606 bits (392), Expect = 5.392e-39 Identity = 99/294 (33.67%), Postives = 152/294 (51.70%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPE--TYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + + LFSAT+ D + + VP + ++L +NEV V I QLY+D ++ + K + + L TI G +IFV +K++ L RLRQ H + S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+P T TG P+ TY+HRVGRTGRFG +G+A+S V + + + +L AI++ + V + +VP D +VEK+ K+V Sbjct: 252 FVLDEADNMLDKQGLGDQCIRVKKFLPKS-----------TQLVLFSATFPDKVKEYAKRVVPNANS---LELQRNEVNVSAIKQLYMDCNDESH----------KYEVLTELYGLLTI-GSSIIFVSTKKTANVLYARLRQEGH-QVSILHGDLQSKERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP-------------TTQTGQPDPSTYVHRVGRTGRFGRKGVAISFVHDKKSYQILSAIQQYF-----------QDVEMTRVPTDDWDKVEKIVKKV 495
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|410078307|ref|XP_003956735.1| (hypothetical protein KAFR_0C06090 [Kazachstania africana CBS 2517] >gi|372463319|emb|CCF57600.1| hypothetical protein KAFR_0C06090 [Kazachstania africana CBS 2517]) HSP 1 Score: 154.066 bits (388), Expect = 1.521e-38 Identity = 97/290 (33.45%), Postives = 149/290 (51.38%), Query Frame = 0 Query: 3 LDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + T + LFSAT++D + + VP + ++L +NEV V I QLY+D ++ + K + + L TI G +IFV +K + L +L+Q H + S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+P P P TYIHR+GRTGRFG G+A+S V++ + +N L AI++ + + + +VP D EVEK+ K+V Sbjct: 230 LDEADNMLDKQGLGDQCIRVKRFLPKTT-----------QLVLFSATFADAVRQYAKKVVPEANT---LELQRNEVNVSAIKQLYMDCNDE----------QHKYEVLCELYGLLTI-GSSIIFVATKNTANLLYGKLKQEGH-QVSILHGDLQSQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLPN-----------GLADPATYIHRIGRTGRFGRTGVAISFVSDKKSFNTLSAIQKYF-----------GDIEMTRVPTDDWDEVEKIVKKV 471
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|1091720602|emb|SCU77759.1| (LADA_0A02080g1_1 [Lachancea dasiensis CBS 10888]) HSP 1 Score: 152.91 bits (385), Expect = 4.549e-38 Identity = 97/292 (33.22%), Postives = 147/292 (50.34%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + LFSAT+ D++ R VP + ++L KNEV V I QL++D ++ K + + L TI G +IFVQ+K++ L +L+Q H + S HG L ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+P V P TYIHR+GRTGRFG G+A+S V + + + +L AI++ + + + +VP D EVEK+ K+V Sbjct: 232 FVLDEADNMLDKQGLGDQCLRVKKFLPKA-----------TQLVLFSATFDDSVRNYARKVVPNANS---LELQKNEVNVSAIKQLFMDCTDEN----------NKYEVLTELYGLLTI-GSSIIFVQTKQTANVLYAKLKQEGH-QVSILHGDLQSSERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP-----------TTVQGKADPSTYIHRIGRTGRFGRTGVAISFVHDRKSFEVLTAIQKYF-----------GDIEMTRVPTDDWDEVEKIVKKV 475
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|254579254|ref|XP_002495613.1| (ZYRO0B15576p [Zygosaccharomyces rouxii] >gi|238938503|emb|CAR26680.1| ZYRO0B15576p [Zygosaccharomyces rouxii] >gi|1128477007|dbj|GAV47656.1| hypothetical protein ZYGR_0H05020 [Zygosaccharomyces rouxii]) HSP 1 Score: 152.525 bits (384), Expect = 6.763e-38 Identity = 97/294 (32.99%), Postives = 152/294 (51.70%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPE--TYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + + LFSAT+ D + + VP + ++L +NEV V I QLY+D ++ + K + + L TI G +IFV +K++ L RL+Q H + S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+P T TG P+ TY+HRVGRTGRFG +G+A+S V + + + +L +I++ + V + +VP D +VEK+ K+V Sbjct: 245 FVLDEADNMLDKQGLGDQCIRVKKFLPKS-----------TQLVLFSATFPDQVKEYAKRVVPDANS---LELQRNEVNVSAIKQLYMDCNDESH----------KYEVLTELYGLLTI-GSSIIFVSTKKTANLLYARLKQEGH-QVSILHGDLQSKERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP-------------TTQTGQPDPSTYVHRVGRTGRFGRKGVAISFVHDKKSYQILSSIQKYF-----------QDVEMTRVPTDDWDKVEKIVKKV 488
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|1147416669|ref|XP_020076968.1| (DEAD-domain-containing protein [Hyphopichia burtonii NRRL Y-1933] >gi|1064977866|gb|ODV67901.1| DEAD-domain-containing protein [Hyphopichia burtonii NRRL Y-1933]) HSP 1 Score: 152.14 bits (383), Expect = 1.037e-37 Identity = 97/292 (33.22%), Postives = 148/292 (50.68%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LDA+N D C R++ + C+ LFSAT+ D + A FVP + ++L + E+ V+ I QLY+D + +FE ++ L G +IFV++K + L R++Q H S HGGL RD DF +GR VL+ T+VL+RGID+ ++ V+N+D+P +E N D P TY+HR+GRTGRFG G+++S V + + + L AI + + + + +VP D EVEK+ K+V Sbjct: 258 FVLDEADNMLDAQNLGDQCLRVKRALPKD-----------CQLVLFSATFPDRVRAYAEKFVPNANS---LELKQEELNVDGIKQLYMDCDSVNH---KFE--------VLCELYSLLTIGSSIIFVKTKDTANKLYGRMKQEGH-TVSVLHGGLETTARDKLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPV--------DESNKPD---PSTYLHRIGRTGRFGRLGVSISFVHDKKSYQDLMAIRKYF-----------GDIEMTKVPTDDWDEVEKIVKKV 501
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|326634444|pdb|3PEW|A (Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 >gi|333361498|pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6 And Adp >gi|333361501|pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6) HSP 1 Score: 149.828 bits (377), Expect = 1.114e-37 Identity = 98/292 (33.56%), Postives = 151/292 (51.71%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + LFSAT++D + + VP + ++L NEV V+ I QLY+D + + A +F D + L TI G +IFV +K++ L +L+ H E S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+ P +A + P TYIHR+GRTGRFG +G+A+S V + +N+L AI++ + + + +VP D EVEK+ K+V Sbjct: 149 FVLDEADNMLDQQGLGDQCIRVKRFLPKDT-----------QLVLFSATFADAVRQYAKKIVPNANT---LELQTNEVNVDAIKQLYMDCKNE---ADKF-------DVLTELYGVMTI-GSSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL---PTLANGQAD--------PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF-----------GDIEMTRVPTDDWDEVEKIVKKV 392
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|365763281|gb|EHN04811.1| (Dbp5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]) HSP 1 Score: 149.443 bits (376), Expect = 1.244e-37 Identity = 98/292 (33.56%), Postives = 151/292 (51.71%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + LFSAT++D + + VP + ++L NEV V+ I QLY+D + + A +F D + L TI G +IFV +K++ L +L+ H E S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+ P +A + P TYIHR+GRTGRFG +G+A+S V + +N+L AI++ + + + +VP D EVEK+ K+V Sbjct: 127 FVLDEADNMLDQQGLGDQCIRVKRFLPKDT-----------QLVLFSATFADAVRQYAKKIVPNANT---LELQXNEVNVDAIKQLYMDCKNE---ADKF-------DVLTELYGLMTI-GSSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL---PTLANGQAD--------PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF-----------GDIEMTRVPTDDWDEVEKIVKKV 370
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|578050284|emb|CDH14215.1| (probable ATP-dependent RNA helicase DBP5 [Zygosaccharomyces bailii ISA1307] >gi|1159861692|gb|AQZ14884.1| DBP5 (YOR046C) [Zygosaccharomyces parabailii]) HSP 1 Score: 151.369 bits (381), Expect = 1.300e-37 Identity = 95/294 (32.31%), Postives = 151/294 (51.36%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGA--PETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + + LFSAT+ D + + VP + ++L +NEV V I QLY+D ++ + K + + L TI G +IFV +K++ L RL+Q H + S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+P T +G P TY+HR+GRTGRFG +G+A+S V + + +N+L +I+ + V + ++P D +VEK+ K+V Sbjct: 232 FVLDEADNMLDKQGLGDQCIRVKKFLPKST-----------QLVLFSATFPDAVREYAKRVVPNANT---LELQRNEVNVSAIKQLYMDCNDENH----------KYEVLCELYGLLTI-GSSIIFVATKKTANQLYARLKQEGH-QVSILHGDLQSQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP-------------TTQSGQADPSTYVHRIGRTGRFGRKGVAISFVHDKKSYNVLSSIQHYF-----------GDVEMTRIPTDDWDQVEKMVKKV 475
BLAST of EWM27830.1 vs. NCBI_GenBank
Match: gi|326634448|pdb|3PEY|A (Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3) HSP 1 Score: 149.828 bits (377), Expect = 1.384e-37 Identity = 98/292 (33.56%), Postives = 151/292 (51.71%), Query Frame = 0 Query: 1 MTLDEADQLLDAKNKID-CERIRGLIEGTAPGRAKSGTPICRYALFSATYSDTIMANVRDFVPRTSKRALIQLDKNEVMVEEIAQLYVDLREQGYDAPRFEQQRRKEDFIVALLKERTITGKVVIFVQSKRSCAALADRLRQLRHLEASEFHGGLTPEERDIFFADFIQGRRNVLVATDVLSRGIDVEGIAWVINFDMPFQPRVARSDEEGNVTDTGAPETYIHRVGRTGRFGAEGIAVSLVANNQEWNLLRAIERDYALGIKAQAGQEAAVLIHQVPADSIPEVEKVAKQV 291 LDEAD +LD + D C R++ + + LFSAT++D + + VP + ++L NEV V+ I QLY+D + + A +F D + L TI G +IFV +K++ L +L+ H E S HG L +ERD DF +GR VL+ T+VL+RGID+ ++ V+N+D+ P +A + P TYIHR+GRTGRFG +G+A+S V + +N+L AI++ + + + +VP D EVEK+ K+V Sbjct: 149 FVLDEADNMLDQQGLGDQCIRVKRFLPKDT-----------QLVLFSATFADAVRQYAKKIVPNANT---LELQTNEVNVDAIKQLYMDCKNE---ADKF-------DVLTELYGLMTI-GSSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL---PTLANGQAD--------PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF-----------GDIEMTRVPTDDWDEVEKIVKKV 392 The following BLAST results are available for this feature:
BLAST of EWM27830.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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