EWM27839.1, cds2842 (CDS) Nannochloropsis gaditana

Overview
NameEWM27839.1
Unique Namecds2842
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:63756..63821 +
Alignment locationCM002460.1:64006..64068 +
Alignment locationCM002460.1:64288..64350 +
Alignment locationCM002460.1:64596..64697 +
Alignment locationCM002460.1:64869..64928 +
Alignment locationCM002460.1:65054..65122 +
Alignment locationCM002460.1:65333..65428 +
Alignment locationCM002460.1:65570..65625 +
Alignment locationCM002460.1:65797..65863 +
Alignment locationCM002460.1:66137..66298 +
Alignment locationCM002460.1:66449..66718 +
Alignment locationCM002460.1:67271..67351 +
Alignment locationCM002460.1:67582..67671 +
Alignment locationCM002460.1:67882..68034 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27839.1
Productflap endonuclease-1
Orig transcript idgnl|cribi|Naga_100074g12.797.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:63756..63821 +
CM002460.1supercontigCM002460.1:64006..64068 +
CM002460.1supercontigCM002460.1:64288..64350 +
CM002460.1supercontigCM002460.1:64596..64697 +
CM002460.1supercontigCM002460.1:64869..64928 +
CM002460.1supercontigCM002460.1:65054..65122 +
CM002460.1supercontigCM002460.1:65333..65428 +
CM002460.1supercontigCM002460.1:65570..65625 +
CM002460.1supercontigCM002460.1:65797..65863 +
CM002460.1supercontigCM002460.1:66137..66298 +
CM002460.1supercontigCM002460.1:66449..66718 +
CM002460.1supercontigCM002460.1:67271..67351 +
CM002460.1supercontigCM002460.1:67582..67671 +
CM002460.1supercontigCM002460.1:67882..68034 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0007275multicellular organism development
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR0200455-3_exonuclease_C
IPR023426Flap_endonuc
IPR019974XPG_CS
IPR029060PIN_domain-like
IPR0024215-3_exonuclease_N
IPR006086XPG-I_dom
IPR008918HhH2
IPR006085XPG_DNA_repair_N
IPR006084XPG/Rad2
Homology
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|585110163|gb|EWM27839.1| (flap endonuclease-1 [Nannochloropsis gaditana])

HSP 1 Score: 948.732 bits (2451), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAKFGGKKK 465
            MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAKFGGKKK
Sbjct:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAKFGGKKK 465          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|298706804|emb|CBJ29727.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 426.017 bits (1094), Expect = 1.385e-142
Identity = 231/448 (51.56%), Postives = 297/448 (66.29%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQ-LTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDN-PIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWL---PRIKVRKPSSLPPSAPPSVSPVEEGD-KAMPGDENACKTAEVDSKAG-MEGEK------EEGI----KAAAIVAREVAPDEPAKSVEGEVMEM-PAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFF 430
            MGI GLTKL++DEAP  +KE  ++   GR VAVDASMA+YQFLIA+R  SGG   SQ LTNEAGEVTSHIQG+FNRTIRML+ G+KP ++FDGKPP LKGGEL KR  KR KAE+ELK A E  +  + D+ SKRLVR  +  + DCKKLL LMGVP + AP EAEAQCAALA+ G VY  ATED D LTF TP+LLR MT +G N PI E+DY+K+L+GL L+H +F+DLC+L GCDYT +I+GIGPK AL L++++G IE +++++   KY VP +WL    R + RK +     A       EE   KA   +  A    +V  K G  + +K      + G+    +AA + A+     E A   E E+ +  P Y  AR LF++PE+    E   KW +P+E GL  FL++  GFN +RV SGI KLK +R  + QKR+DSFF
Sbjct:    1 MGIHGLTKLLSDEAPNCMKEVDLDSLTGRKVAVDASMAMYQFLIAVR--SGGEGQSQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATEADDKNDVDKFSKRLVRVTRDHNEDCKKLLSLMGVPVVTAPSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWLEPAERAERRKQARQEAKARKEARAKEEAKVKAETANPEAVSEEDVQQKEGDSDSDKAKADTPDHGVSVAKEAADVSAKRERETEDAAESEQEMDDTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFF 446          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|219125938|ref|XP_002183226.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 >gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 407.912 bits (1047), Expect = 3.050e-136
Identity = 214/434 (49.31%), Postives = 286/434 (65.90%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFF 430
            MGIKGL KL++DEAP+ I+E +++  +GR +A+DASMAIYQFLIA+R G     A+ LTN  GE TSHIQG+FNRTIR +  GI+PVFVFDGKPP +K  EL KRREKREKA++ L  A EE NVEEQD+QSKRLVRAG KE+ DC+KLL LMGVP + APCEAEAQ AAL K G VYA  TED D LTFATP L+R +T  +A  + ++ ++Y K++EGL ++H QF+DLCI++GCDY   IRG+GPK+AL LI+++G+IE V+E I + K+ VP  W+P  K                                   ++D+++  + + EEG+++        + +E    V+ E + +PAYV AR LF + E+ +  EL  KW       L+ FL+D +GFN DRVK+ I KL+A+  A    Q R+DSFF
Sbjct:    1 MGIKGLAKLLSDEAPDCIREVELKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTNAEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQAALAVASEEGNVEEQDKQSKRLVRAGTKENEDCRKLLTLMGVPVVTAPCEAEAQAAALCKAGLVYATGTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIEGLAISHDQFVDLCIMLGCDYCDTIRGVGPKTALKLIREHGNIEKVIETIDRKKFVVPESWVPNEK-----------------------------------KLDAQS--DDDDEEGVESP-------SKEENNGIVDTEEL-IPAYVQARKLFNEHEVLNDIEL--KWKPCQAEDLQKFLVDDMGFNVDRVKNNIEKLQAAYKANSKPQTRMDSFF 387          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|1210518933|dbj|GAX22215.1| (flap endonuclease-1 [Fistulifera solaris])

HSP 1 Score: 382.489 bits (981), Expect = 1.822e-126
Identity = 230/470 (48.94%), Postives = 294/470 (62.55%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAAS-QLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAKFGGKKK 465
            MGIKGL KLI+DEAP+AI+E +++  +GR +A+DASMAIYQFLIA+R  +GG   S  LTN  GE TSHIQG+FNRTIR +  GIKPVFVFDGKPP +K GEL KRREKREKA+  L+ A EE NVEEQD+ SKRLVRAG+KE+ DC+KLL LMGVP + APCEAEAQ AALAK G VYA  TED D LTF TP L+R MT  SA  + ++ ++Y K LEG+ LT AQF+DLCI++GCDY   I+G+GPK+AL LI+++G IE++L+++   KY VP  WLP                   P +E +++    EN                                      SV  ++  +PAYV+AR +F + E+   A+L  KW       L  FL+D +GFNPDRV S I KL+A+  A +  Q R+D+FF       T + ++KRK  P   KGKG      KKK
Sbjct:    1 MGIKGLAKLISDEAPDAIREVELKSLHGRKIAIDASMAIYQFLIAVRSNNGGQGQSFMLTNAEGETTSHIQGMFNRTIRYMTEGIKPVFVFDGKPPEVKSGELLKRREKREKAQLALQVATEEGNVEEQDKHSKRLVRAGQKENDDCQKLLRLMGVPVVLAPCEAEAQAAALAKAGLVYAAGTEDMDALTFQTPVLVRKMTFASASKSMVQTMNYAKALEGMNLTQAQFVDLCIMLGCDYCDTIKGVGPKTALKLIREHGCIENILKHLDGKKYVVPESWLP-------------------PPKEAEESSSDQEN--------------------------------------SVSDDLQPIPAYVLARRMFNEHEVLMHADL--KWKPCEREALTKFLVDEMGFNPDRVASSIDKLEAAYKANKAPQTRMDAFFAVQPKKPTDA-SVKRKIEP-VVKGKGAKGPAAKKK 409          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|1210521704|dbj|GAX19694.1| (flap endonuclease-1 [Fistulifera solaris])

HSP 1 Score: 375.941 bits (964), Expect = 5.518e-124
Identity = 232/470 (49.36%), Postives = 293/470 (62.34%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAAS-QLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAKFGGKKK 465
            MGIKGL KLI+DEAP+AI+E +++  +GR +A+DASMAIYQFLIA+R  +GG   S  LTN  GE TSHIQG+FNRTIR +  GIKPVFVFDGKPP +K GEL KRREKREKA+  L+ A EE NVEEQD+ SKRLVRAG+KE+ DC+KLL+LMGVP + APCEAEAQ AALAK G VYA  TED D LTF TP L+R MT  SA  + ++ ++Y K LEG+ LT AQF+DLCI++GCDY   I+G+GPK+AL LI+++G IE++L+++   KY VP  W           LPP A                       AE D +                            SV  +   +PAYV+AR +F + E+   AEL +K  E  E  L  FL+  +GFNPDRV S I KL+A+  A +  Q R+D+FF       T + ++KRK  P   KGKG      KKK
Sbjct:    1 MGIKGLAKLISDEAPDAIREVELKSLHGRKIAIDASMAIYQFLIAVRSNNGGQGQSFMLTNAEGETTSHIQGMFNRTIRYMTEGIKPVFVFDGKPPEVKSGELLKRREKREKAQLALQVATEEGNVEEQDKHSKRLVRAGQKENDDCQKLLKLMGVPVVLAPCEAEAQAAALAKAGLVYAAGTEDMDALTFQTPVLVRKMTFASASKSMVQTMNYAKALEGMNLTQAQFVDLCIMLGCDYCDTIKGVGPKTALKLIREHGCIENILKHLDGKKYVVPESW-----------LPPPA----------------------EAESDQE---------------------------NSVSDDHQPIPAYVLARRMFNEHEVLTHAELKWKPCEREE--LTKFLVGEMGFNPDRVASSIDKLEAAYKANKAPQTRMDAFFAVQPKKPTDA-SVKRKVEP-VVKGKGAKGPAAKKK 406          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|397621116|gb|EJK66115.1| (hypothetical protein THAOC_12982 [Thalassiosira oceanica])

HSP 1 Score: 364.385 bits (934), Expect = 5.374e-119
Identity = 219/434 (50.46%), Postives = 280/434 (64.52%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGEVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFF 430
            MGIKGL KL++DEAP++I+E  +   +GR +AVDASMAIYQ LIAIR G+   AA+ LTN  GE TSHIQG+FNRTI+ +  GI+PV+VFDGKPP+ K GEL KRREKR+KAE  LK A+E  +VEEQD+ +KRLVRAG KE+ D K+LL LMGVP + APCEAEAQ AALAK GKVYA ATED D LTF TP  +R MT   A    I+E++Y K L GLGL H QF+DLCIL+GCDY   I+GIGPK+AL LIK++ +IE +L+ +++ KY VP  + P +  RK               E+GD      +N   TA+   K   EGE++E I                         +P YV AR LF   E+   +E+  KW +     L+AFL+D +GFNP+RV+S I KL+ +    +  Q R+DSFF
Sbjct:    1 MGIKGLAKLLSDEAPDSIREVPLSSLHGRKIAVDASMAIYQMLIAIRSGNPNMAATVLTNADGETTSHIQGIFNRTIKFITEGIRPVYVFDGKPPSFKSGELLKRREKRQKAEEALKAAEESGDVEEQDKHTKRLVRAGHKENEDIKRLLTLMGVPIINAPCEAEAQAAALAKAGKVYATATEDMDALTFQTPIQVRKMTFAKASQAEIQEVNYSKALIGLGLNHDQFVDLCILLGCDYCDTIKGIGPKTALKLIKEHNNIETILKTLNREKYTVPESYEPNVAARKRQL-----------EEDGDS-----DNEDATAKT-GKPKTEGEEDEEI-------------------------LPVYVEARKLFNSHEVLPDSEIELKWKDCQPEQLKAFLVDEMGFNPERVQSNIEKLQKAHKTSKKPQMRMDSFF 392          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|553181073|ref|XP_005853508.1| (flap endonuclease-1 [Nannochloropsis gaditana CCMP526] >gi|422295551|gb|EKU22850.1| flap endonuclease-1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 352.058 bits (902), Expect = 7.242e-118
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAK 173
            MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAK
Sbjct:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAK 173          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|1072235301|gb|OEU20030.1| (PIN domain-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 350.132 bits (897), Expect = 3.793e-114
Identity = 176/284 (61.97%), Postives = 210/284 (73.94%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDNP----IKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPR 280
            MGIKGL KL++DEAP+ I+E + +  +GR VA+DASMAIYQFLIA+R G     A  LTN  GE TSHIQG+FNRTIR L  G+KPVFVFDGK P +K GEL+KRREKR+KAE ELKKA ++ NVEE D+ SKRL RAG+KE+ DCKKLL LMGVP + AP EAEAQ AAL K G VYA  TED D LTFATP L+R MT A        I++++YKK +EGL LTH QF+DLCILMGCDY   I+GIGPK+AL LIK++G IE ++  +   K  VP   L R
Sbjct:    1 MGIKGLAKLLSDEAPDCIREVEFKSLHGRKVAIDASMAIYQFLIAVRSGGPNQQAMMLTNADGETTSHIQGMFNRTIRFLTEGMKPVFVFDGKAPQMKSGELEKRREKRKKAEEELKKAADDDNVEEMDKHSKRLARAGRKENEDCKKLLRLMGVPVVVAPMEAEAQAAALCKAGLVYATGTEDMDALTFATPILIRKMTFANQAAKGAKIQQMNYKKAVEGLELTHEQFVDLCILMGCDYCDTIKGIGPKTALKLIKEHGSIEKIIPALQDEK-PVPAYVLAR 283          

HSP 2 Score: 65.0846 bits (157), Expect = 8.373e-8
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 0
Query:  359 MPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFF 430
            +PAYV+AR LF   E+    EL  KW  P +  L  FL++  GFN DRVK+ I KL  +  A +  Q R+DSFF
Sbjct:  276 VPAYVLARELFFNHEVDTDVEL--KWTAPKKEELTKFLVEEAGFNADRVKASIEKLDKAHTANRKPQARMDSFF 347          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|699255179|ref|XP_009861628.1| (PREDICTED: flap endonuclease 1 [Ciona intestinalis])

HSP 1 Score: 344.354 bits (882), Expect = 6.008e-112
Identity = 167/280 (59.64%), Postives = 210/280 (75.00%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWL 278
            MGI GL+KLI D+AP A+KE+++++Y GR VA+DASMA+YQFLIAIR        +QLTNE GEVTSHI GLF RTIR+L +GIKPVFVFDGKPP +K GEL KR E+RE+AE EL KAQE     + ++ S+RLV+  ++   DCKKLL LMG+P +EAP EAEAQCA+L K GKVYA ATED D LTF + RLLR++T   A   PI+E  Y+K+LE + +TH QF+DLCIL+GCDY  +IRG+GPK A  LIK+Y  I+ +L+NI   KY VP  W+
Sbjct:    1 MGILGLSKLICDKAPSAVKENEIKNYFGRKVAIDASMAVYQFLIAIRQD-----GNQLTNEDGEVTSHIAGLFYRTIRLLGNGIKPVFVFDGKPPQMKSGELAKRAERREQAEKELAKAQESGEAADVEKYSRRLVKVTREHMDDCKKLLRLMGIPVVEAPTEAEAQCASLVKSGKVYATATEDMDALTFHSSRLLRHLTFSEARKMPIQEFVYEKVLEEMEMTHEQFVDLCILLGCDYCEHIRGVGPKRAYDLIKQYRSIDEILKNIDLKKYTVPDGWV 275          

HSP 2 Score: 75.8702 bits (185), Expect = 2.893e-11
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 0
Query:  334 KAAAIVAREVAPDEPAKSVEGEVMEMP---AYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFK-----PSGSSSTSSTTLKRKEAPAAAKG 454
            +A  ++ +  + DE  K+++ +   +P    Y  AR LF+ P++    ++  KW +P+E G+  F+++  GFN DRV+SGI K+  +R    Q RLD FFK     P      S T +K + A   AKG
Sbjct:  245 RAYDLIKQYRSIDEILKNIDLKKYTVPDGWVYKDARQLFLAPDVAASEDVELKWNDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQNRQKSTQGRLDDFFKVLPSTPKTKKRKSDTKIKSESAKKRAKG 373          
BLAST of EWM27839.1 vs. NCBI_GenBank
Match: gi|1036551479|ref|NP_001315436.1| (flap endonuclease 1 [Danio rerio] >gi|1040680401|ref|XP_017209293.1| flap endonuclease 1 isoform X1 [Danio rerio] >gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 >gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio] >gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio])

HSP 1 Score: 342.043 bits (876), Expect = 4.420e-111
Identity = 167/280 (59.64%), Postives = 205/280 (73.21%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTS--AGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWL 278
            MGI GL KLIAD AP AIKEH+++ Y GR +A+DASM IYQFLIA+R        + L NE GE TSH+ G+F RTIRML SGIKPV+VFDGKPP LK GEL+KR E+R +AE  L +AQE    E  D+ SKRLV+  K+ + +CKKLL LMGVP++EAPCEAEA CAAL K GKVYA ATED D LTF T  LLR++T+  A   PI+E  + ++L+ + LTH QFIDLCIL+GCDY   I+GIGPK A+ LIK++G IE +LENI   K+  P +WL
Sbjct:    1 MGIHGLAKLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQD-----GNVLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWL 275          

HSP 2 Score: 72.7886 bits (177), Expect = 2.479e-10
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 0
Query:  362 YVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAK 459
            Y  AR LF++PE+ D   ++ KW EP+E GL  F+     F+ DR+++G  K+  SR    Q RLD+FF  +GS S+     KRKE       K K K
Sbjct:  276 YKEARGLFLEPEVVDGTSVDLKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISS-----KRKEPETKGSAKKKQK 368          
The following BLAST results are available for this feature:
BLAST of EWM27839.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110163|gb|EWM27839.1|0.000e+0100.00flap endonuclease-1 [Nannochloropsis gaditana][more]
gi|298706804|emb|CBJ29727.1|1.385e-14251.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|219125938|ref|XP_002183226.1|3.050e-13649.31predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210518933|dbj|GAX22215.1|1.822e-12648.94flap endonuclease-1 [Fistulifera solaris][more]
gi|1210521704|dbj|GAX19694.1|5.518e-12449.36flap endonuclease-1 [Fistulifera solaris][more]
gi|397621116|gb|EJK66115.1|5.374e-11950.46hypothetical protein THAOC_12982 [Thalassiosira oc... [more]
gi|553181073|ref|XP_005853508.1|7.242e-118100.00flap endonuclease-1 [Nannochloropsis gaditana CCMP... [more]
gi|1072235301|gb|OEU20030.1|3.793e-11461.97PIN domain-like protein [Fragilariopsis cylindrus ... [more]
gi|699255179|ref|XP_009861628.1|6.008e-11259.64PREDICTED: flap endonuclease 1 [Ciona intestinalis... [more]
gi|1036551479|ref|NP_001315436.1|4.420e-11159.64flap endonuclease 1 [Danio rerio] >gi|1040680401|r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2850rna2850Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications