EWM27836.1, cds2839 (CDS) Nannochloropsis gaditana

Overview
NameEWM27836.1
Unique Namecds2839
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:58604..58804 -
Alignment locationCM002460.1:57876..58450 -
Alignment locationCM002460.1:57608..57688 -
Alignment locationCM002460.1:57373..57466 -
Alignment locationCM002460.1:57028..57069 -
Alignment locationCM002460.1:56755..56871 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27836.1
Productintraflagellar transport protein 46
Orig transcript idgnl|cribi|Naga_100074g9.794.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:58604..58804 -
CM002460.1supercontigCM002460.1:57876..58450 -
CM002460.1supercontigCM002460.1:57608..57688 -
CM002460.1supercontigCM002460.1:57373..57466 -
CM002460.1supercontigCM002460.1:57028..57069 -
CM002460.1supercontigCM002460.1:56755..56871 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0042073intraciliary transport
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR022088Intraflagellar_transp_cmplxB
Homology
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|585110160|gb|EWM27836.1| (intraflagellar transport protein 46 [Nannochloropsis gaditana])

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIGNVIHCPPLFFLISFVFRVLDIP 369
            MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIGNVIHCPPLFFLISFVFRVLDIP
Sbjct:    1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIGNVIHCPPLFFLISFVFRVLDIP 369          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|553181082|ref|XP_005853511.1| (hypothetical protein NGA_0493200 [Nannochloropsis gaditana CCMP526] >gi|422295554|gb|EKU22853.1| hypothetical protein NGA_0493200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 287/294 (97.62%), Postives = 288/294 (97.96%), Query Frame = 0
Query:    1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCEL 294
            MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTR +     L
Sbjct:    1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRSRTTTINL 294          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|298715657|emb|CBJ28183.1| (flagellar associated protein [Ectocarpus siliculosus])

HSP 1 Score: 114.005 bits (284), Expect = 1.644e-24
Identity = 45/90 (50.00%), Postives = 72/90 (80.00%), Query Frame = 0
Query:  257 VEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
            +EGAYDP +YA++  ++  E++++  ++ RY+ H+ +L+T L+CF+PD++PAVG+MDAFLK+PRPD  PD+LG KV+DEPA  QS  +++
Sbjct:  215 IEGAYDPADYAHL--NVSAEIKDLFQYIGRYKAHEVDLDTSLRCFVPDFIPAVGDMDAFLKVPRPDQNPDELGFKVLDEPAANQSDATVL 302          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|1084291021|ref|XP_018648614.1| (hypothetical protein Smp_142670, partial [Schistosoma mansoni] >gi|353229569|emb|CCD75740.1| hypothetical protein Smp_142670, partial [Schistosoma mansoni])

HSP 1 Score: 106.686 bits (265), Expect = 2.167e-23
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 0
Query:  257 VEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIG 347
            +EG Y+P +Y ++  ++  E++E+  ++ RY P   ELET LK FIPDY+PAVG++DAFLK+PRPDG PD LG  V+DEP   QS P+++ 
Sbjct:  102 IEGIYNPADYEHL--TVSSEIKEIFEYIQRYTPQTIELETKLKPFIPDYIPAVGDIDAFLKVPRPDGKPDYLGLLVLDEPCANQSDPTVLN 190          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430415|ref|XP_013075672.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 108.227 bits (269), Expect = 1.072e-22
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query:  256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
            H+EGAYDP +Y  +  S+  E++E+  ++TRY P   EL+  LK FIPDY+PAVG++DAF+K+PRPD  PD LG  V+DEP  +QS P+++
Sbjct:  161 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 249          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430424|ref|XP_013075675.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X5 [Biomphalaria glabrata])

HSP 1 Score: 108.227 bits (269), Expect = 1.073e-22
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query:  256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
            H+EGAYDP +Y  +  S+  E++E+  ++TRY P   EL+  LK FIPDY+PAVG++DAF+K+PRPD  PD LG  V+DEP  +QS P+++
Sbjct:  140 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 228          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430421|ref|XP_013075674.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X4 [Biomphalaria glabrata])

HSP 1 Score: 108.227 bits (269), Expect = 1.083e-22
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query:  256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
            H+EGAYDP +Y  +  S+  E++E+  ++TRY P   EL+  LK FIPDY+PAVG++DAF+K+PRPD  PD LG  V+DEP  +QS P+++
Sbjct:  147 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 235          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430413|ref|XP_013075671.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 108.227 bits (269), Expect = 1.195e-22
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query:  256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
            H+EGAYDP +Y  +  S+  E++E+  ++TRY P   EL+  LK FIPDY+PAVG++DAF+K+PRPD  PD LG  V+DEP  +QS P+++
Sbjct:  168 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 256          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|942122316|ref|XP_014350743.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X3 [Latimeria chalumnae])

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 0
Query:  258 EGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIG 347
            EGAYDP +Y ++   +  +V+E+  ++TRY P   ELE  LK FIPD++PAVG++DAFLK+PRPDG PD+LG  V+DEP  +QS P+++ 
Sbjct:   57 EGAYDPSDYEHL--PVSADVKELFQYITRYTPQSIELEHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVVDEPCIKQSDPTVLS 144          
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430419|ref|XP_013075673.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X3 [Biomphalaria glabrata])

HSP 1 Score: 107.842 bits (268), Expect = 1.554e-22
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query:  256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
            H+EGAYDP +Y  +  S+  E++E+  ++TRY P   EL+  LK FIPDY+PAVG++DAF+K+PRPD  PD LG  V+DEP  +QS P+++
Sbjct:  154 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 242          
The following BLAST results are available for this feature:
BLAST of EWM27836.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110160|gb|EWM27836.1|0.000e+0100.00intraflagellar transport protein 46 [Nannochlorops... [more]
gi|553181082|ref|XP_005853511.1|0.000e+097.62hypothetical protein NGA_0493200 [Nannochloropsis ... [more]
gi|298715657|emb|CBJ28183.1|1.644e-2450.00flagellar associated protein [Ectocarpus siliculos... [more]
gi|1084291021|ref|XP_018648614.1|2.167e-2350.55hypothetical protein Smp_142670, partial [Schistos... [more]
gi|908430415|ref|XP_013075672.1|1.072e-2251.65PREDICTED: intraflagellar transport protein 46 hom... [more]
gi|908430424|ref|XP_013075675.1|1.073e-2251.65PREDICTED: intraflagellar transport protein 46 hom... [more]
gi|908430421|ref|XP_013075674.1|1.083e-2251.65PREDICTED: intraflagellar transport protein 46 hom... [more]
gi|908430413|ref|XP_013075671.1|1.195e-2251.65PREDICTED: intraflagellar transport protein 46 hom... [more]
gi|942122316|ref|XP_014350743.1|1.277e-2252.22PREDICTED: intraflagellar transport protein 46 hom... [more]
gi|908430419|ref|XP_013075673.1|1.554e-2251.65PREDICTED: intraflagellar transport protein 46 hom... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2847rna2847Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications