EWM27836.1, cds2839 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|585110160|gb|EWM27836.1| (intraflagellar transport protein 46 [Nannochloropsis gaditana]) HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0 Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query: 1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIGNVIHCPPLFFLISFVFRVLDIP 369
MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIGNVIHCPPLFFLISFVFRVLDIP
Sbjct: 1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIGNVIHCPPLFFLISFVFRVLDIP 369
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|553181082|ref|XP_005853511.1| (hypothetical protein NGA_0493200 [Nannochloropsis gaditana CCMP526] >gi|422295554|gb|EKU22853.1| hypothetical protein NGA_0493200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0 Identity = 287/294 (97.62%), Postives = 288/294 (97.96%), Query Frame = 0
Query: 1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCEL 294
MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTR + L
Sbjct: 1 MQTASSLELSTEFSVEGGREGDGEGRGGEEDRQPLVFASPPRPRFEGMEEHDFAPLADGGKNMETGKEHPWQGMDRPQAKLEGPAARLPSTLPPFSPPSTSSSPSTRLRARSDRELSPSISAPQQQRRRPQNRQGMDLPTDGKSERSKETYSSGAGRGEREAEGPGELPTEEEKKGGGLQYQGKKGERRGERHIESMSGDEEGGRRGAVEEREDGQRGDEGQEEGEGAQLPFPLKQQQLTTGIPEKAPANSGAVGHVEGAYDPQEYAYMLPSLPLEVREVLAFVTRSRTTTINL 294
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|298715657|emb|CBJ28183.1| (flagellar associated protein [Ectocarpus siliculosus]) HSP 1 Score: 114.005 bits (284), Expect = 1.644e-24 Identity = 45/90 (50.00%), Postives = 72/90 (80.00%), Query Frame = 0
Query: 257 VEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
+EGAYDP +YA++ ++ E++++ ++ RY+ H+ +L+T L+CF+PD++PAVG+MDAFLK+PRPD PD+LG KV+DEPA QS +++
Sbjct: 215 IEGAYDPADYAHL--NVSAEIKDLFQYIGRYKAHEVDLDTSLRCFVPDFIPAVGDMDAFLKVPRPDQNPDELGFKVLDEPAANQSDATVL 302
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|1084291021|ref|XP_018648614.1| (hypothetical protein Smp_142670, partial [Schistosoma mansoni] >gi|353229569|emb|CCD75740.1| hypothetical protein Smp_142670, partial [Schistosoma mansoni]) HSP 1 Score: 106.686 bits (265), Expect = 2.167e-23 Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 0
Query: 257 VEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIG 347
+EG Y+P +Y ++ ++ E++E+ ++ RY P ELET LK FIPDY+PAVG++DAFLK+PRPDG PD LG V+DEP QS P+++
Sbjct: 102 IEGIYNPADYEHL--TVSSEIKEIFEYIQRYTPQTIELETKLKPFIPDYIPAVGDIDAFLKVPRPDGKPDYLGLLVLDEPCANQSDPTVLN 190
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430415|ref|XP_013075672.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X2 [Biomphalaria glabrata]) HSP 1 Score: 108.227 bits (269), Expect = 1.072e-22 Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
H+EGAYDP +Y + S+ E++E+ ++TRY P EL+ LK FIPDY+PAVG++DAF+K+PRPD PD LG V+DEP +QS P+++
Sbjct: 161 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 249
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430424|ref|XP_013075675.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X5 [Biomphalaria glabrata]) HSP 1 Score: 108.227 bits (269), Expect = 1.073e-22 Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
H+EGAYDP +Y + S+ E++E+ ++TRY P EL+ LK FIPDY+PAVG++DAF+K+PRPD PD LG V+DEP +QS P+++
Sbjct: 140 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 228
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430421|ref|XP_013075674.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X4 [Biomphalaria glabrata]) HSP 1 Score: 108.227 bits (269), Expect = 1.083e-22 Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
H+EGAYDP +Y + S+ E++E+ ++TRY P EL+ LK FIPDY+PAVG++DAF+K+PRPD PD LG V+DEP +QS P+++
Sbjct: 147 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 235
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430413|ref|XP_013075671.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X1 [Biomphalaria glabrata]) HSP 1 Score: 108.227 bits (269), Expect = 1.195e-22 Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
H+EGAYDP +Y + S+ E++E+ ++TRY P EL+ LK FIPDY+PAVG++DAF+K+PRPD PD LG V+DEP +QS P+++
Sbjct: 168 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 256
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|942122316|ref|XP_014350743.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X3 [Latimeria chalumnae]) HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22 Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 0
Query: 258 EGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSIIG 347
EGAYDP +Y ++ + +V+E+ ++TRY P ELE LK FIPD++PAVG++DAFLK+PRPDG PD+LG V+DEP +QS P+++
Sbjct: 57 EGAYDPSDYEHL--PVSADVKELFQYITRYTPQSIELEHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVVDEPCIKQSDPTVLS 144
BLAST of EWM27836.1 vs. NCBI_GenBank
Match: gi|908430419|ref|XP_013075673.1| (PREDICTED: intraflagellar transport protein 46 homolog isoform X3 [Biomphalaria glabrata]) HSP 1 Score: 107.842 bits (268), Expect = 1.554e-22 Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 256 HVEGAYDPQEYAYMLPSLPLEVREVLAFVTRYQPHDCELETPLKCFIPDYLPAVGEMDAFLKMPRPDGVPDDLGRKVIDEPAPRQSHPSII 346
H+EGAYDP +Y + S+ E++E+ ++TRY P EL+ LK FIPDY+PAVG++DAF+K+PRPD PD LG V+DEP +QS P+++
Sbjct: 154 HIEGAYDPTDYENL--SVSAEIKELFQYITRYTPQAIELDHKLKPFIPDYIPAVGDIDAFIKIPRPDKKPDTLGLTVLDEPCAKQSDPTVL 242 The following BLAST results are available for this feature:
BLAST of EWM27836.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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