EWM27850.1, cds2829 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27850.1
Unique Name	cds2829
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:15474..15606 -
Alignment location	CM002460.1:15238..15351 -
Alignment location	CM002460.1:14765..14933 -
Alignment location	CM002460.1:14598..14640 -
Alignment location	CM002460.1:14164..14334 -
Alignment location	CM002460.1:13887..14006 -
Alignment location	CM002460.1:13539..13701 -
Alignment location	CM002460.1:13008..13331 -
Alignment location	CM002460.1:12660..12835 -
Alignment location	CM002460.1:12428..12616 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27850.1
Product	gtp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100318g1.3142.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:15474..15606 -
CM002460.1	supercontig	CM002460.1:15238..15351 -
CM002460.1	supercontig	CM002460.1:14765..14933 -
CM002460.1	supercontig	CM002460.1:14598..14640 -
CM002460.1	supercontig	CM002460.1:14164..14334 -
CM002460.1	supercontig	CM002460.1:13887..14006 -
CM002460.1	supercontig	CM002460.1:13539..13701 -
CM002460.1	supercontig	CM002460.1:13008..13331 -
CM002460.1	supercontig	CM002460.1:12660..12835 -
CM002460.1	supercontig	CM002460.1:12428..12616 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0000166	nucleotide binding
GO:0005525	GTP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR012676	TGS-like
IPR031167	G_OBG
IPR027417	P-loop_NTPase
IPR023192	TGS-like_dom
IPR013029	DUF933
IPR012675	Beta-grasp_dom
IPR004396	ATPase_YchF/OLA1
IPR006073	GTP_binding_domain

Homology

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BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|585110176|gb|EWM27850.1| (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1091.64 bits (2822), Expect = 0.000e+0
Identity = 533/533 (100.00%), Postives = 533/533 (100.00%), Query Frame = 0

Query:    1 MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAAAIQSSAIRPLHPPCPLSQASGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNTTPDEDTIGDTGAFLTRPTCQGSSAQQVSNKVKLRRHRTTSHIAFANRTSTSGESSISSSIP 533
            MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAAAIQSSAIRPLHPPCPLSQASGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNTTPDEDTIGDTGAFLTRPTCQGSSAQQVSNKVKLRRHRTTSHIAFANRTSTSGESSISSSIP
Sbjct:    1 MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAAAIQSSAIRPLHPPCPLSQASGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNTTPDEDTIGDTGAFLTRPTCQGSSAQQVSNKVKLRRHRTTSHIAFANRTSTSGESSISSSIP 533

[Close]

BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|553184185|ref|XP_005854045.1| (gtp-binding protein [Nannochloropsis gaditana CCMP526] >gi|422295017|gb|EKU22316.1| gtp-binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 386/476 (81.09%), Postives = 388/476 (81.51%), Query Frame = 0

Query:    1 MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAAAIQSSAIRPLHPPCPLSQASGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAAN-----FPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFN 471
            MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAA                   SGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAA      F      P   +   P                                        N +         I QVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFN
Sbjct:    1 MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAAV------------------SGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAAKSPTHVFWLSPTSPKASLCYPPS--------------------------------------SNSW---------ISQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFN 411

[Close]

BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|1194458499|gb|OUC12170.1| (redox-regulated ATPase YchF [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 494.582 bits (1272), Expect = 2.953e-170
Identity = 249/366 (68.03%), Postives = 293/366 (80.05%), Query Frame = 0

Query:  110 LRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKD---KSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            LRAGIVGLPNVGKSTLFNA+ G A AQAANFPFCTIEPNVGI  VPDPRL  LA I+ S  ++PA +EFVDIAGLVKGASQGEGLGN+FLANIRE DAIV V+RCFENDDI+HVSGSVDP RD++VINLEL L+DLAQ EKR++RA KD   K   Q E D L ++  AL  GK AR +   L+E+E   +  +G LT   VIYA NV + +LATGN +VDKVR +AA EGA VV++SAQVE+EL+ELP E+R EFLESLGV E   GL++L++ TY+LLGLQTYFT GPKETRAWTI+KG  APQAAGVIH+DFE+GFIRAET++ +DLV  G+  A K+ G +RSEGKEYV +EGDVMLFRFN 
Sbjct:    2 LRAGIVGLPNVGKSTLFNAIVGNAKAQAANFPFCTIEPNVGIVAVPDPRLNVLAKISGSSEIVPARVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVSGSVDPLRDVDVINLELGLADLAQAEKRIERARKDARTKKEIQVEVDALDKIIAALNAGKSARSVE--LNEEEELAIKAMGFLTRKPVIYATNVSEDDLATGNAFVDKVRAIAADEGAQVVVISAQVESELIELPEEERAEFLESLGVTE--GGLQSLIRATYNLLGLQTYFTTGPKETRAWTIRKGMVAPQAAGVIHTDFERGFIRAETVAYQDLVDCGAMNAAKEKGLVRSEGKEYVVQEGDVMLFRFNV 363

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BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|219121906|ref|XP_002181298.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407284|gb|EEC47221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 493.426 bits (1269), Expect = 8.985e-170
Identity = 239/365 (65.48%), Postives = 297/365 (81.37%), Query Frame = 0

Query:  108 MKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            MKL+  IVGLPNVGKSTLFNALT    A+AAN+PFCTIEPNVGI  VPDP+L  L +I KS  V+PA LEFVD+AGL+KGAS GEGLGN+FLA+IR+CDA+V V+RCFE++D+VHV GS+DP RD E+INLELAL+DL+QVEKRL+R  KD++ +  E+  L++V   L + +PAR ++  L E+E   +  LGLLT  K++YAANVGDA+LA GN+ VD++RE A KEGA +V+VSAQVEAELVEL + DR +FLESLGV+ E  GLR LV+E Y +LGLQTY+T GP ETRAWTI+KG TAP+AAGVIH+DFE+GFIRAET+S +DLVA GSE   K+ GKLRSEGK+Y+ +EGDV+LFRFN 
Sbjct:    1 MKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVSVPDPKLEILKDINKSVKVVPAALEFVDVAGLIKGASTGEGLGNQFLASIRQCDAVVHVVRCFEDEDVVHVDGSIDPVRDAELINLELALADLSQVEKRLERVRKDRNASPVEKSALEKVAAVLLKDQPARNVV--LDEEEENAIKSLGLLTAKKMVYAANVGDADLANGNEMVDRLRETAEKEGAKLVVVSAQVEAELVELSVGDRTDFLESLGVKLEDTGLRKLVREAYDILGLQTYYTSGPTETRAWTIRKGWTAPKAAGVIHNDFERGFIRAETVSYDDLVACGSEIEAKNKGKLRSEGKDYIVQEGDVILFRFNV 363

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BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|748151668|ref|WP_039725995.1| (GTP-binding protein YchF [Lyngbya confervoides] >gi|746956733|gb|KIF14272.1| GTP-binding protein [Aphanocapsa montana BDHKU210001] >gi|746983514|gb|KIF39206.1| GTP-binding protein [Lyngbya confervoides BDU141951])

HSP 1 Score: 490.73 bits (1262), Expect = 1.192e-168
Identity = 249/367 (67.85%), Postives = 296/367 (80.65%), Query Frame = 0

Query:  110 LRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRAL----KDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            LRAGIVGLPNVGKSTLFNA+   A AQAANFPFCTIEPNVG+  VPDPRL  LA I++S  ++PA +EFVDIAGLV+GAS+GEGLGN+FLANIRE DAIV V+RCF+NDDI+HVSGS+DP RD E+INLEL LSDLAQVEKRL+RA     KDK + QAE D L ++   L EGK AR +     E+EL  +  LGLLT   VIYA NV + +LATGN YV++V+ +AA EGA VV++SAQVE+EL+ELP EDR +FLESLGV+E   GL++L++ TY LLGLQTYFT GPKETRAWTIK G +APQAAGVIH+DFE+GFIRAET+S +DLV  GS   VK+ G+LRSEGK+YV +EGDVMLFRFN 
Sbjct:    2 LRAGIVGLPNVGKSTLFNAVVANAKAQAANFPFCTIEPNVGVVAVPDPRLEVLAKISESAEIVPARVEFVDIAGLVEGASKGEGLGNQFLANIREVDAIVHVVRCFQNDDIIHVSGSIDPARDAEIINLELTLSDLAQVEKRLERARKQAKKDKEI-QAEVDVLDKLLPVLNEGKTARTV-DLTPEEELL-IKPLGLLTRKPVIYATNVNEDDLATGNDYVEQVKAIAAAEGAEVVVISAQVESELIELPEEDRADFLESLGVEE--GGLQSLIRATYELLGLQTYFTTGPKETRAWTIKAGMSAPQAAGVIHTDFERGFIRAETVSYQDLVDAGSMNGVKEKGQLRSEGKDYVVQEGDVMLFRFNV 363

[Close]

BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|298714678|emb|CBJ27603.1| (PYchF, plastid YchF-like GTPase [Ectocarpus siliculosus])

HSP 1 Score: 491.886 bits (1265), Expect = 2.056e-168
Identity = 242/367 (65.94%), Postives = 289/367 (78.75%), Query Frame = 0

Query:  107 SMKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNTT 473
            +MKL+ GIVG+PNVGKSTLFNA+T    A  AN+PF TIEPN+G+ EVPD RL  LA I KS   +P+ L+F DIAGLVKGAS+GEGLGN+FLANIRECDAIV V+RCFE+ DI+HV GSVDP RD+++IN+ELAL+D+AQVEKRLQ+  KDK  T +E+ GL ++   L EGKP R +   L+E+E  D   LGLLT  KVIYA NV D++LA GN  VD VR+ A +EGA VV+VSAQVE+ELV+L  ED++EFLESLGV EE CGLRALVKE Y+ LGLQTYFT G  ET+AWTI  G TAP+AAGVIHSDFE+GFIRAE +  EDLV  GSEKA K+ G LRSEGKEYV +EGDV+ FRFN +
Sbjct:   50 TMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLAEINKSVKTVPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDPDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKVAKDKKATASEKTGLAKLLKVLEEGKPVRTVE--LTEEEAKDTAYLGLLTAKKVIYACNVADSDLADGNAMVDGVRKFAEEEGARVVIVSAQVESELVDLDGEDKQEFLESLGVSEETCGLRALVKEAYTALGLQTYFTSGETETKAWTIYAGWTAPKAAGVIHSDFERGFIRAEAIKYEDLVNCGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNVS 414

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BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|1210263684|dbj|BAZ82679.1| (GTP-binding protein YchF [Sphaerospermopsis kisseleviana NIES-73])

HSP 1 Score: 488.034 bits (1255), Expect = 1.205e-167
Identity = 244/366 (66.67%), Postives = 295/366 (80.60%), Query Frame = 0

Query:  110 LRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVT---QAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            LRAGIVGLPNVGKSTLFNA+   A A+AANFPFCTIEPNVGI  VPD RL  LA +A SE ++PA +EFVDIAGLVKGASQGEGLGN+FL++IRE DAIV V+RCFENDDI+HV+GSVDP RD+E INLEL LSDLAQ+E+R++R  K    +   Q E   L+++  AL EGK  R++   L+E+E A +  LGLLT   +IYAANV + +LATGN++V+KVREVA+ E A VV+VSAQVEAELVELP ED+ +FLESLGV+E   GL++L++ TY+LLGL+TYFT GPKETRAWTI  G +APQAAGVIHSDFE+GFIRAET++ +DLV  GS  A K+ G +RSEGKEY+ KEGDVMLFRFN 
Sbjct:    2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDDRLNVLAKLANSEQIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDPVRDIETINLELGLSDLAQIERRIERTRKQARTSKDAQFEITVLEKLAAALNEGKSVRQV--SLNEEESAIIKGLGLLTNKPIIYAANVSEDDLATGNEFVEKVREVASTENAQVVIVSAQVEAELVELPEEDKADFLESLGVKE--GGLKSLIRATYTLLGLRTYFTSGPKETRAWTINAGMSAPQAAGVIHSDFERGFIRAETVAYDDLVTHGSMNAAKEKGLVRSEGKEYIVKEGDVMLFRFNV 363

[Close]

BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|505000015|ref|WP_015187117.1| (GTP-binding protein YchF [Gloeocapsa sp. PCC 7428] >gi|428263294|gb|AFZ29240.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 7428])

HSP 1 Score: 488.034 bits (1255), Expect = 1.314e-167
Identity = 241/366 (65.85%), Postives = 296/366 (80.87%), Query Frame = 0

Query:  110 LRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVT---QAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            LRAGIVGLPNVGKSTLFNAL   A A+AANFPFCTIEPNVG+  VPD RL  L  I+ S  ++PA +EFVDIAGLVKGASQGEGLGN+FL++IRE DAIV V+RCFENDDI+HV+GSVDP+RD+E+INLELAL+DLAQ+E+R++R  K    +   Q E   L+++  AL EGK  R+I   L+E+E   +  LGLL+G  +IYAANV + +LATGN+YV++VR++A++E A VV+VSAQVEAELVELP ED+ EFL SLGV+E   GL++L++ TY LLGL+TYFT GPKETRAWTI  G +APQAAGVIHSDFE+GFIRAET++ +DLVA GS  A K+ G +RSEGKEYV +EGDVMLFRFN 
Sbjct:    2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLQVLGEISASAQIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDPKRDIEIINLELALADLAQIERRIERTKKQARTSKDAQFEVSVLEKLSTALNEGKSVRQI--NLTEEEATTIKGLGLLSGKPIIYAANVSEEDLATGNEYVEQVRQIASQENAQVVIVSAQVEAELVELPEEDKAEFLASLGVEE--GGLKSLIRATYELLGLRTYFTSGPKETRAWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVATGSMNAAKEKGLVRSEGKEYVVQEGDVMLFRFNV 363

[Close]

BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|1121221914|ref|WP_073549354.1| (redox-regulated ATPase YchF [Chroogloeocystis siderophila] >gi|1115263452|gb|OKH27144.1| redox-regulated ATPase YchF [Chroogloeocystis siderophila 5.2 s.c.1])

HSP 1 Score: 486.878 bits (1252), Expect = 3.746e-167
Identity = 241/366 (65.85%), Postives = 295/366 (80.60%), Query Frame = 0

Query:  110 LRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVT---QAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            LRAGIVGLPNVGKSTLFNAL   A A+AANFPFCTIEPNVG+  VPD RL  L  I+ S  ++PA +EFVDIAGLVKGASQGEGLGN+FL++IRE DAIV V+RCFENDDI+HV+GSVDP+RD+E+INLELAL+DLAQ+E+R++R  K    +   Q E   L+ +  AL EGK  R+I   L+E+E A +  LGLL+G  +IYAANV + +LA GN+YV++VR++A++E A VV+VSAQVEAELVELP ED+ EFL SLGV+E   GL++L++ TY LLGL+TYFT GPKETRAWTI  G +APQAAGVIHSDFE+GFIRAET++ +DLVA GS  A K+ G +RSEGKEYV +EGDVMLFRFN 
Sbjct:    2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLQVLGEISNSAQIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDPKRDIEIINLELALADLAQIERRIERTKKQARTSKDAQFEVSVLETLSAALNEGKSVRQI--NLTEEEAATIKGLGLLSGKPIIYAANVSEEDLAAGNEYVEQVRQIASQENAQVVIVSAQVEAELVELPEEDKAEFLSSLGVEE--GGLKSLIRATYELLGLRTYFTSGPKETRAWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVATGSMNAAKEKGLVRSEGKEYVVQEGDVMLFRFNV 363

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BLAST of EWM27850.1 vs. NCBI_GenBank
Match: gi|1210089569|dbj|BAY08705.1| (GTP-binding protein YchF [Calothrix sp. NIES-2098])

HSP 1 Score: 486.878 bits (1252), Expect = 7.362e-167
Identity = 242/369 (65.58%), Postives = 296/369 (80.22%), Query Frame = 0

Query:  107 SMKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVT---QAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQAAGVIHSDFEKGFIRAETMSCEDLVALGSEKAVKDAGKLRSEGKEYVCKEGDVMLFRFNT 472
            S  LRAGIVGLPNVGKSTLFNAL   A A+AANFPFCTIEPNVG+  VPD RL  L+NI+ S  ++PA +EFVDIAGLVKGASQGEGLGN+FL++IRE DAIV V+RCFENDDI+HV+GSVDP RD+E+INLEL L+DLAQ+E+R+ R  K    +   Q E   L+++  AL EGK  R+I   L+E+E   +  LGLLT   +IYAANV + ELATGN++VD+VR++A++E A VV+VSAQVEAELVELP ED+ +FL SLGV+E   GL++L++ TY+LLGL+TYFT GPKETRAWTI  G +APQAAGVIHSDFE+GFIRAET++ +DLVA GS  A K+ G +RSEGKEY+ KEGDVMLFRFN 
Sbjct:   18 SKMLRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSNISSSAQIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDPARDIEIINLELGLADLAQIERRIDRTRKQARTSKEAQFEVTVLEKLAAALNEGKSVRQI--SLTEEEAEIIKGLGLLTNKPIIYAANVSEDELATGNEFVDRVRQIASEENAQVVIVSAQVEAELVELPEEDKADFLASLGVEE--GGLKSLIRATYTLLGLRTYFTSGPKETRAWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYDDLVASGSINAAKEKGLVRSEGKEYIVKEGDVMLFRFNV 382

The following BLAST results are available for this feature:

BLAST of EWM27850.1 vs. NCBI_GenBank

BLAST of EWM27850.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585110176\|gb\|EWM27850.1\|	0.000e+0	100.00	gtp-binding protein [Nannochloropsis gaditana]	[more]
gi\|553184185\|ref\|XP_005854045.1\|	0.000e+0	81.09	gtp-binding protein [Nannochloropsis gaditana CCMP...	[more]
gi\|1194458499\|gb\|OUC12170.1\|	2.953e-170	68.03	redox-regulated ATPase YchF [Alkalinema sp. CACIAM...	[more]
gi\|219121906\|ref\|XP_002181298.1\|	8.985e-170	65.48	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
gi\|748151668\|ref\|WP_039725995.1\|	1.192e-168	67.85	GTP-binding protein YchF [Lyngbya confervoides] >g...	[more]
gi\|298714678\|emb\|CBJ27603.1\|	2.056e-168	65.94	PYchF, plastid YchF-like GTPase [Ectocarpus silicu...	[more]
gi\|1210263684\|dbj\|BAZ82679.1\|	1.205e-167	66.67	GTP-binding protein YchF [Sphaerospermopsis kissel...	[more]
gi\|505000015\|ref\|WP_015187117.1\|	1.314e-167	65.85	GTP-binding protein YchF [Gloeocapsa sp. PCC 7428]...	[more]
gi\|1121221914\|ref\|WP_073549354.1\|	3.746e-167	65.85	redox-regulated ATPase YchF [Chroogloeocystis side...	[more]
gi\|1210089569\|dbj\|BAY08705.1\|	7.362e-167	65.58	GTP-binding protein YchF [Calothrix sp. NIES-2098]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2837	rna2837	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications