EWM27853.1, cds2815 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|585110180|gb|EWM27853.1| (Protein of unknown function DUF179, partial [Nannochloropsis gaditana]) HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query: 1 MAVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPSRLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEVTLPSLTPSPSAPVRLFMPHDIPPPLPPPSLPPSLPPSLPPSLSGQGLVSRSGLQGRDPQKPGPGGAQDGQALVDRGVGAHGGVLPGDQERAVREQRKEMDGRGRRGGLRPGGEGGEKRAGRCMCRG 391
MAVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPSRLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEVTLPSLTPSPSAPVRLFMPHDIPPPLPPPSLPPSLPPSLPPSLSGQGLVSRSGLQGRDPQKPGPGGAQDGQALVDRGVGAHGGVLPGDQERAVREQRKEMDGRGRRGGLRPGGEGGEKRAGRCMCRG
Sbjct: 1 MAVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPSRLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEVTLPSLTPSPSAPVRLFMPHDIPPPLPPPSLPPSLPPSLPPSLSGQGLVSRSGLQGRDPQKPGPGGAQDGQALVDRGVGAHGGVLPGDQERAVREQRKEMDGRGRRGGLRPGGEGGEKRAGRCMCRG 391
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|298708916|emb|CBJ30871.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 126.331 bits (316), Expect = 8.102e-30 Identity = 73/178 (41.01%), Postives = 103/178 (57.87%), Query Frame = 0
Query: 88 DWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVT-NDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264
+W + L+ G VL+A+P F + +F GL G Q D A++LPVVLL+G +G T GL+LNRRTG L+GDL D + F IQP+ LGGT +GI IHTYPE+E A ++ +GL+F GN +A ++V + S F+FF Q T+W GEL+ E++
Sbjct: 88 EWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKF--------GLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGNDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVD 257
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1210531319|dbj|GAX10080.1| (hypothetical protein FisN_2Lh349 [Fistulifera solaris]) HSP 1 Score: 103.99 bits (258), Expect = 2.907e-21 Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 0
Query: 82 SSGEGGDWAVYSSALRGGVVLVANPAVFLAG-------PPAGLASRF--LLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLL-GSGSGGTSGLVLNRRTGYLVGDLN--VDSSG-------FKIQPVHLGGT-GESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREI 263
S DWA + + G +L+ANP F A P + L +RF LP L LG D A++LPV+L++ S + GT ++LNRRTG+L+GDL +D G F IQP+ GG S G+ M+H P + A Q+T DGLF+GG+ T AQ+ + E+ S FKFF+Q T++APG+ ++E+
Sbjct: 111 SQQTSKDWARAADTVAPGTILLANPDYFCANFNGNRRVPSSDLMARFGLSLPPPLELG------------PDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLFWGGDPTEAQDAMEDPSLERPMSGFDFKFFVQSTIFAPGQAEKEV 304
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1210514374|dbj|GAX26704.1| (hypothetical protein FisN_2Hh349 [Fistulifera solaris]) HSP 1 Score: 101.679 bits (252), Expect = 1.871e-20 Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 0
Query: 82 SSGEGGDWAVYSSALRGGVVLVANPAVFLAG-------PPAGLASRF--LLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLL-GSGSGGTSGLVLNRRTGYLVGDLN--VDSSG-------FKIQPVHLGGTGE-SDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREI 263
S DWA + G +L+ANP F A P + L +RF LP L LG D A++LPV+L++ S + GT ++LNRRTG+L+GDL +D G F IQP+ GG S G+ M+H P + A Q+T DGL++GG+ T AQ+ + E+ S FKFF+Q T++APG+ ++E+
Sbjct: 105 SQQSSKDWARAVDTVAPGTILLANPDYFCANFNGNRRVPSSDLLARFGLSLPPPLELG------------PDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLYWGGDPTQAQDAMADPSLERPMSGFDFKFFVQSTMFAPGQAEKEV 298
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|551581757|ref|XP_005776358.1| (hypothetical protein EMIHUDRAFT_463594 [Emiliania huxleyi CCMP1516] >gi|485628462|gb|EOD23929.1| hypothetical protein EMIHUDRAFT_463594 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-18 Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 0
Query: 99 GVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAI--DNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSG-FKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREI 263
G +L+ANPA F + P F P LG F G + D A +LPV+LLL G GG+S ++L RRTG L+GD+++DS G I P+ LGGT + + +H+ LE A + DGL+ GG + AA+ V + +++RFKFF+ T WA G+L+ E+
Sbjct: 121 GRMLLANPAKFCSRNP------FARPVK-DLGRFGLDGPVSPDEMPPDLTAQMLPVLLLLEHGEGGSSAVLLERRTGALMGDIDIDSFGCVAIAPLWLGGTQRQNALSALHSVEGLEGAAPL-RDGLWLGG-WEAARPRVADSSLAAARFKFFLGATTWAAGQLEAEV 279
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1072238213|gb|OEU22940.1| (hypothetical protein FRACYDRAFT_233102 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 92.8189 bits (229), Expect = 1.827e-17 Identity = 76/250 (30.40%), Postives = 113/250 (45.20%), Query Frame = 0
Query: 69 LARIMQGAQQRRASSGEG-----------GDWAVYSSALRGGVVLVANPAVFLAGPPAGLAS-------------RFLLPSDLSLGLFSSFGGGG----QQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLN---VDSSG---------------FKIQPVHLGGTGE-SDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREIEVTL 267
L + QQ+ S+G G DWA +R G VL+ANP F G + +F S L + FG D A++LPVV+++ + G G++LNRRTGYL+GDL D S F IQP+ GG S G+ M+H P + A Q+T DG+++GG+ T AQ+ + ++ S FKFF+Q T+W+ G L+ E++ +
Sbjct: 29 LIEFSRKQQQQGVSTGSGIADDDDKETIVEDWAKPMEGIRPGTVLIANPRKFCEDGDFGDSGSDDNESTGVKDFLKFGWSSKPDPSLLAKFGLTQPPPRHLGADRQADLLPVVIVVSTDGGQIQGVLLNRRTGYLLGDLEQPAEDGSSDDNNDNNDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVNDAQQITEDGMYWGGDPTQAQDAMEDPSLDRIYSGFDFKFFVQSTIWSSGVLQGEVDDNI 278
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|551643987|ref|XP_005824786.1| (hypothetical protein GUITHDRAFT_43931, partial [Guillardia theta CCMP2712] >gi|428168866|gb|EKX37806.1| hypothetical protein GUITHDRAFT_43931, partial [Guillardia theta CCMP2712]) HSP 1 Score: 83.1889 bits (204), Expect = 2.352e-15 Identity = 63/181 (34.81%), Postives = 93/181 (51.38%), Query Frame = 0
Query: 89 WAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGG-TGESDGIFM----IHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264
WAV ++ G +LV++P F RF G + +D VVLL+ G+ G+SG ++NR T Y VGD+ F+ P++LGG GE G++M IH P L AT+V+ DG+++GG+ A Q LV E A + F+FF + WAPG+L+ EI+
Sbjct: 1 WAVEIDEVQPGCLLVSSPETF----------RF---------------AGSRLVLDQ-----SVVLLVRHGASGSSGFIINRPTQYNVGDVTKKLPMFEQNPLYLGGDIGE--GVYMSVSSIHGVPGLRNATEVS-DGIYYGGSEHAMQ-LVSEGKAEAKDFRFFFKYVAWAPGQLEAEIQ 147
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|219125420|ref|XP_002182980.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405774|gb|EEC45716.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 86.6557 bits (213), Expect = 4.653e-15 Identity = 72/233 (30.90%), Postives = 117/233 (50.21%), Query Frame = 0
Query: 58 GNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGG----GQQAIDNLANILPVVLLLGSGSGG-TSGLVLNRRTGYLVGDL-----NVDSSG-----------FKIQPVHLGGTGE-SDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQEL---VREQGASSSRFKFFIQQTLW-APGELKREIE 264
G D + S + I Q ++ DW+ S+++ G+VL+ANP F + G R +PS L + FG D A++LPV++++ G G ++LNRRTGYL+GDL N+ S+ F IQP+ GG S G+ M+H P + A ++++GL++GG+ AQ+ V ++ + FKFF+Q T+W + EL++EI+
Sbjct: 111 GTDSSSVESKIDDLITFARSQDGSTGSVSTDWSEPVSSIQKGMVLLANPEQFCSDFGGG---RRKMPSP---KLLAKFGLTLPPPADLGPDRRADLLPVLIVVECGEGSRVRAVLLNRRTGYLLGDLEQADTNLGSTSSKKAPTPVLEKFCIQPLWFGGVDNVSAGLDMLHQCPTVPDAEPLSDEGLYWGGDPALAQDAMDEVTDKVLTGFDFKFFVQSTVWGSSKELQKEID 337
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1011122928|ref|WP_062044788.1| (hypothetical protein [Lentimicrobium saccharophilum] >gi|909537413|dbj|GAP44867.1| putative transcriptional regulator, AlgH/UPF0301 family [Lentimicrobium saccharophilum]) HSP 1 Score: 73.559 bits (179), Expect = 9.624e-12 Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 0
Query: 152 VVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264
VVLL G+ G+++N+ + D+ VD +GF PV+LGG ++D +F IHT P++ +GL++GGN + L+RE+ S +FF+ W +L +E+E
Sbjct: 29 VVLLADHSEEGSFGIIINKPVDVKLSDVAVDFAGFD-APVYLGGPVKTDSLFFIHTRPDIIDDGVKILEGLYWGGNIETVKTLIREKRLSREDIRFFVGYAGWMANQLDQELE 140
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|397642509|gb|EJK75280.1| (hypothetical protein THAOC_02998 [Thalassiosira oceanica]) HSP 1 Score: 76.2554 bits (186), Expect = 2.117e-11 Identity = 72/230 (31.30%), Postives = 100/230 (43.48%), Query Frame = 0
Query: 92 YSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLF------SSFGGGGQQAI----------------DNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDL-------NVDSSGFK---------IQPVHLGG-------------TGES--DGIFMIHTYPELERATQV-TNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREI 263
+ L G+VLVANPA F + G L + GLF S G A+ D A++LPV+LL G +++NRRTG L+GDL + ++SGF IQP+ G TG S I M+H P + +T + +DGL++GG+ AQE + E+ S FKFFIQ T W P +L+ EI
Sbjct: 228 FEDLLEAGIVLVANPAKFCSDLADGKGGGRLKKKGILEGLFDDPFPTSKDAEGVSLALLAKFGITLPPSPDLGPDRRADLLPVILLTARDEQGCQAVLMNRRTGNLMGDLPPSLFDSSEETSGFSSPHPLAAFMIQPLWWAGSSPSSKLDDESLDTGSSGMKAIDMVHACPFVNGSTSLPKSDGLYWGGDPVQAQEAMSDSRLEKPLSGFDFKFFIQTTKWLPSQLEDEI 457 The following BLAST results are available for this feature:
BLAST of EWM27853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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