EWM27853.1, cds2815 (CDS) Nannochloropsis gaditana

Overview
NameEWM27853.1
Unique Namecds2815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1334765..1334986 -
Alignment locationCM002459.1:1334537..1334606 -
Alignment locationCM002459.1:1334294..1334410 -
Alignment locationCM002459.1:1334037..1334180 -
Alignment locationCM002459.1:1333732..1333854 -
Alignment locationCM002459.1:1333279..1333551 -
Alignment locationCM002459.1:1333092..1333183 -
Alignment locationCM002459.1:1332778..1332910 -

Link to JBrowse

Properties
Property NameValue
Start range1332778
Start range.
Protein idEWM27853.1
ProductProtein of unknown function DUF179
Partialtrue
Orig transcript idgnl|cribi|Naga_100219g6.2194.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1334765..1334986 -
CM002459.1supercontigCM002459.1:1334537..1334606 -
CM002459.1supercontigCM002459.1:1334294..1334410 -
CM002459.1supercontigCM002459.1:1334037..1334180 -
CM002459.1supercontigCM002459.1:1333732..1333854 -
CM002459.1supercontigCM002459.1:1333279..1333551 -
CM002459.1supercontigCM002459.1:1333092..1333183 -
CM002459.1supercontigCM002459.1:1332778..1332910 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301
Homology
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|585110180|gb|EWM27853.1| (Protein of unknown function DUF179, partial [Nannochloropsis gaditana])

HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MAVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPSRLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEVTLPSLTPSPSAPVRLFMPHDIPPPLPPPSLPPSLPPSLPPSLSGQGLVSRSGLQGRDPQKPGPGGAQDGQALVDRGVGAHGGVLPGDQERAVREQRKEMDGRGRRGGLRPGGEGGEKRAGRCMCRG 391
            MAVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPSRLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEVTLPSLTPSPSAPVRLFMPHDIPPPLPPPSLPPSLPPSLPPSLSGQGLVSRSGLQGRDPQKPGPGGAQDGQALVDRGVGAHGGVLPGDQERAVREQRKEMDGRGRRGGLRPGGEGGEKRAGRCMCRG
Sbjct:    1 MAVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPSRLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEVTLPSLTPSPSAPVRLFMPHDIPPPLPPPSLPPSLPPSLPPSLSGQGLVSRSGLQGRDPQKPGPGGAQDGQALVDRGVGAHGGVLPGDQERAVREQRKEMDGRGRRGGLRPGGEGGEKRAGRCMCRG 391          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|298708916|emb|CBJ30871.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 126.331 bits (316), Expect = 8.102e-30
Identity = 73/178 (41.01%), Postives = 103/178 (57.87%), Query Frame = 0
Query:   88 DWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVT-NDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264
            +W   +  L+ G VL+A+P  F       +  +F        GL     G  Q   D  A++LPVVLL+G  +G T GL+LNRRTG L+GDL  D + F IQP+ LGGT   +GI  IHTYPE+E A  ++  +GL+F GN  +A ++V +   S   F+FF Q T+W  GEL+ E++
Sbjct:   88 EWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKF--------GLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGNDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVD 257          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1210531319|dbj|GAX10080.1| (hypothetical protein FisN_2Lh349 [Fistulifera solaris])

HSP 1 Score: 103.99 bits (258), Expect = 2.907e-21
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 0
Query:   82 SSGEGGDWAVYSSALRGGVVLVANPAVFLAG-------PPAGLASRF--LLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLL-GSGSGGTSGLVLNRRTGYLVGDLN--VDSSG-------FKIQPVHLGGT-GESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREI 263
            S     DWA  +  +  G +L+ANP  F A        P + L +RF   LP  L LG             D  A++LPV+L++  S + GT  ++LNRRTG+L+GDL   +D  G       F IQP+  GG    S G+ M+H  P +  A Q+T DGLF+GG+ T AQ+ +     E+  S   FKFF+Q T++APG+ ++E+
Sbjct:  111 SQQTSKDWARAADTVAPGTILLANPDYFCANFNGNRRVPSSDLMARFGLSLPPPLELG------------PDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLFWGGDPTEAQDAMEDPSLERPMSGFDFKFFVQSTIFAPGQAEKEV 304          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1210514374|dbj|GAX26704.1| (hypothetical protein FisN_2Hh349 [Fistulifera solaris])

HSP 1 Score: 101.679 bits (252), Expect = 1.871e-20
Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 0
Query:   82 SSGEGGDWAVYSSALRGGVVLVANPAVFLAG-------PPAGLASRF--LLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLL-GSGSGGTSGLVLNRRTGYLVGDLN--VDSSG-------FKIQPVHLGGTGE-SDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREI 263
            S     DWA     +  G +L+ANP  F A        P + L +RF   LP  L LG             D  A++LPV+L++  S + GT  ++LNRRTG+L+GDL   +D  G       F IQP+  GG    S G+ M+H  P +  A Q+T DGL++GG+ T AQ+ +     E+  S   FKFF+Q T++APG+ ++E+
Sbjct:  105 SQQSSKDWARAVDTVAPGTILLANPDYFCANFNGNRRVPSSDLLARFGLSLPPPLELG------------PDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLYWGGDPTQAQDAMADPSLERPMSGFDFKFFVQSTMFAPGQAEKEV 298          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|551581757|ref|XP_005776358.1| (hypothetical protein EMIHUDRAFT_463594 [Emiliania huxleyi CCMP1516] >gi|485628462|gb|EOD23929.1| hypothetical protein EMIHUDRAFT_463594 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-18
Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 0
Query:   99 GVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAI--DNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSG-FKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREI 263
            G +L+ANPA F +  P      F  P    LG F   G      +  D  A +LPV+LLL  G GG+S ++L RRTG L+GD+++DS G   I P+ LGGT   + +  +H+   LE A  +  DGL+ GG + AA+  V +   +++RFKFF+  T WA G+L+ E+
Sbjct:  121 GRMLLANPAKFCSRNP------FARPVK-DLGRFGLDGPVSPDEMPPDLTAQMLPVLLLLEHGEGGSSAVLLERRTGALMGDIDIDSFGCVAIAPLWLGGTQRQNALSALHSVEGLEGAAPL-RDGLWLGG-WEAARPRVADSSLAAARFKFFLGATTWAAGQLEAEV 279          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1072238213|gb|OEU22940.1| (hypothetical protein FRACYDRAFT_233102 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 92.8189 bits (229), Expect = 1.827e-17
Identity = 76/250 (30.40%), Postives = 113/250 (45.20%), Query Frame = 0
Query:   69 LARIMQGAQQRRASSGEG-----------GDWAVYSSALRGGVVLVANPAVFLAGPPAGLAS-------------RFLLPSDLSLGLFSSFGGGG----QQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLN---VDSSG---------------FKIQPVHLGGTGE-SDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREIEVTL 267
            L    +  QQ+  S+G G            DWA     +R G VL+ANP  F      G +              +F   S     L + FG           D  A++LPVV+++ +  G   G++LNRRTGYL+GDL     D S                F IQP+  GG    S G+ M+H  P +  A Q+T DG+++GG+ T AQ+ +     ++  S   FKFF+Q T+W+ G L+ E++  +
Sbjct:   29 LIEFSRKQQQQGVSTGSGIADDDDKETIVEDWAKPMEGIRPGTVLIANPRKFCEDGDFGDSGSDDNESTGVKDFLKFGWSSKPDPSLLAKFGLTQPPPRHLGADRQADLLPVVIVVSTDGGQIQGVLLNRRTGYLLGDLEQPAEDGSSDDNNDNNDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVNDAQQITEDGMYWGGDPTQAQDAMEDPSLDRIYSGFDFKFFVQSTIWSSGVLQGEVDDNI 278          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|551643987|ref|XP_005824786.1| (hypothetical protein GUITHDRAFT_43931, partial [Guillardia theta CCMP2712] >gi|428168866|gb|EKX37806.1| hypothetical protein GUITHDRAFT_43931, partial [Guillardia theta CCMP2712])

HSP 1 Score: 83.1889 bits (204), Expect = 2.352e-15
Identity = 63/181 (34.81%), Postives = 93/181 (51.38%), Query Frame = 0
Query:   89 WAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGG-TGESDGIFM----IHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264
            WAV    ++ G +LV++P  F          RF                G +  +D       VVLL+  G+ G+SG ++NR T Y VGD+      F+  P++LGG  GE  G++M    IH  P L  AT+V+ DG+++GG+  A Q LV E  A +  F+FF +   WAPG+L+ EI+
Sbjct:    1 WAVEIDEVQPGCLLVSSPETF----------RF---------------AGSRLVLDQ-----SVVLLVRHGASGSSGFIINRPTQYNVGDVTKKLPMFEQNPLYLGGDIGE--GVYMSVSSIHGVPGLRNATEVS-DGIYYGGSEHAMQ-LVSEGKAEAKDFRFFFKYVAWAPGQLEAEIQ 147          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|219125420|ref|XP_002182980.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405774|gb|EEC45716.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.6557 bits (213), Expect = 4.653e-15
Identity = 72/233 (30.90%), Postives = 117/233 (50.21%), Query Frame = 0
Query:   58 GNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGG----GQQAIDNLANILPVVLLLGSGSGG-TSGLVLNRRTGYLVGDL-----NVDSSG-----------FKIQPVHLGGTGE-SDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQEL---VREQGASSSRFKFFIQQTLW-APGELKREIE 264
            G D  +  S +   I     Q  ++     DW+   S+++ G+VL+ANP  F +    G   R  +PS     L + FG           D  A++LPV++++  G G     ++LNRRTGYL+GDL     N+ S+            F IQP+  GG    S G+ M+H  P +  A  ++++GL++GG+   AQ+    V ++  +   FKFF+Q T+W +  EL++EI+
Sbjct:  111 GTDSSSVESKIDDLITFARSQDGSTGSVSTDWSEPVSSIQKGMVLLANPEQFCSDFGGG---RRKMPSP---KLLAKFGLTLPPPADLGPDRRADLLPVLIVVECGEGSRVRAVLLNRRTGYLLGDLEQADTNLGSTSSKKAPTPVLEKFCIQPLWFGGVDNVSAGLDMLHQCPTVPDAEPLSDEGLYWGGDPALAQDAMDEVTDKVLTGFDFKFFVQSTVWGSSKELQKEID 337          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|1011122928|ref|WP_062044788.1| (hypothetical protein [Lentimicrobium saccharophilum] >gi|909537413|dbj|GAP44867.1| putative transcriptional regulator, AlgH/UPF0301 family [Lentimicrobium saccharophilum])

HSP 1 Score: 73.559 bits (179), Expect = 9.624e-12
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 0
Query:  152 VVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264
            VVLL      G+ G+++N+     + D+ VD +GF   PV+LGG  ++D +F IHT P++        +GL++GGN    + L+RE+  S    +FF+    W   +L +E+E
Sbjct:   29 VVLLADHSEEGSFGIIINKPVDVKLSDVAVDFAGFD-APVYLGGPVKTDSLFFIHTRPDIIDDGVKILEGLYWGGNIETVKTLIREKRLSREDIRFFVGYAGWMANQLDQELE 140          
BLAST of EWM27853.1 vs. NCBI_GenBank
Match: gi|397642509|gb|EJK75280.1| (hypothetical protein THAOC_02998 [Thalassiosira oceanica])

HSP 1 Score: 76.2554 bits (186), Expect = 2.117e-11
Identity = 72/230 (31.30%), Postives = 100/230 (43.48%), Query Frame = 0
Query:   92 YSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLF------SSFGGGGQQAI----------------DNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDL-------NVDSSGFK---------IQPVHLGG-------------TGES--DGIFMIHTYPELERATQV-TNDGLFFGGNYTAAQELVR----EQGASSSRFKFFIQQTLWAPGELKREI 263
            +   L  G+VLVANPA F +    G     L    +  GLF      S    G   A+                D  A++LPV+LL      G   +++NRRTG L+GDL       + ++SGF          IQP+   G             TG S    I M+H  P +  +T +  +DGL++GG+   AQE +     E+  S   FKFFIQ T W P +L+ EI
Sbjct:  228 FEDLLEAGIVLVANPAKFCSDLADGKGGGRLKKKGILEGLFDDPFPTSKDAEGVSLALLAKFGITLPPSPDLGPDRRADLLPVILLTARDEQGCQAVLMNRRTGNLMGDLPPSLFDSSEETSGFSSPHPLAAFMIQPLWWAGSSPSSKLDDESLDTGSSGMKAIDMVHACPFVNGSTSLPKSDGLYWGGDPVQAQEAMSDSRLEKPLSGFDFKFFIQTTKWLPSQLEDEI 457          
The following BLAST results are available for this feature:
BLAST of EWM27853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110180|gb|EWM27853.1|0.000e+0100.00Protein of unknown function DUF179, partial [Nanno... [more]
gi|298708916|emb|CBJ30871.1|8.102e-3041.01conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210531319|dbj|GAX10080.1|2.907e-2136.89hypothetical protein FisN_2Lh349 [Fistulifera sola... [more]
gi|1210514374|dbj|GAX26704.1|1.871e-2036.41hypothetical protein FisN_2Hh349 [Fistulifera sola... [more]
gi|551581757|ref|XP_005776358.1|1.509e-1839.29hypothetical protein EMIHUDRAFT_463594 [Emiliania ... [more]
gi|1072238213|gb|OEU22940.1|1.827e-1730.40hypothetical protein FRACYDRAFT_233102 [Fragilario... [more]
gi|551643987|ref|XP_005824786.1|2.352e-1534.81hypothetical protein GUITHDRAFT_43931, partial [Gu... [more]
gi|219125420|ref|XP_002182980.1|4.653e-1530.90predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1011122928|ref|WP_062044788.1|9.624e-1233.63hypothetical protein [Lentimicrobium saccharophilu... [more]
gi|397642509|gb|EJK75280.1|2.117e-1131.30hypothetical protein THAOC_02998 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2823rna2823Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications