EWM30373.1, cds281 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|585113033|gb|EWM30373.1| (proteasome subunit alpha [Nannochloropsis gaditana]) HSP 1 Score: 355.91 bits (912), Expect = 3.400e-124 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 Query: 1 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 176 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK Sbjct: 1 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 176
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|553181369|ref|XP_005853553.1| (proteasome subunit alpha [Nannochloropsis gaditana CCMP526] >gi|422295503|gb|EKU22802.1| proteasome subunit alpha [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 360.533 bits (924), Expect = 6.017e-124 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 Query: 1 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 176 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK Sbjct: 141 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 316
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|499322225|ref|WP_011012717.1| (proteasome endopeptidase complex,subunit alpha [Pyrococcus furiosus] >gi|23821988|sp|Q8U0L6.1|PSA_PYRFU RecName: Full=Proteasome subunit alpha; AltName: Full=20S proteasome alpha subunit; AltName: Full=Proteasome core protein PsmA >gi|18893713|gb|AAL81695.1| proteasome, subunit alpha (multicatalytic endopeptidase complex alpha subunit) [Pyrococcus furiosus DSM 3638] >gi|393189655|gb|AFN04353.1| proteasome subunit alpha [Pyrococcus furiosus COM1]) HSP 1 Score: 77.0258 bits (188), Expect = 7.764e-14 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91 G RP+G+++L+AG+ + P +Y+TDPSG + WKA A+G G TAM + EEKY DM+L DA+KL+L +EN Sbjct: 129 GGVRPFGAALLMAGINDR-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMEN 204
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|1101779791|gb|OIR58878.1| (20S proteasome component alpha 2, PSMA2 [Amphiamblys sp. WSBS2006]) HSP 1 Score: 76.2554 bits (186), Expect = 9.522e-14 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 0 Query: 2 QGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCR 86 +G RP+G S+LIAG+ ET +P +Y+ DPSG++T WKACA+G +E T+LE++ PDMD+ DA+ L++ + Sbjct: 124 RGGVRPFGVSVLIAGIDCETKEPM----------LYQADPSGSYTPWKACALGNNSEKITTLLEKRLRPDMDIEDAVHLAIKALK 198
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|850928612|ref|WP_048058154.1| (proteasome subunit alpha [Pyrococcus yayanosii]) HSP 1 Score: 75.8702 bits (185), Expect = 1.713e-13 Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0 Query: 6 RPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91 RP+G+++L+AG+ E+ P +Y+TDPSG + WKA A+G G TAM + EEKY DM L DA+KL++ +EN Sbjct: 132 RPFGAALLLAGVNEK-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMRLEDAIKLAIFALAKTMEN 204
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|334899805|gb|AEH24073.1| (proteasome subunit alpha [Pyrococcus yayanosii CH1]) HSP 1 Score: 75.8702 bits (185), Expect = 2.074e-13 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91 G RP+G+++L+AG+ E+ P +Y+TDPSG + WKA A+G G TAM + EEKY DM L DA+KL++ +EN Sbjct: 146 GGVRPFGAALLLAGVNEK-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMRLEDAIKLAIFALAKTMEN 221
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|504547439|ref|WP_014734541.1| (proteasome endopeptidase complex,subunit alpha [Pyrococcus sp. ST04] >gi|388250166|gb|AFK23019.1| proteasome subunit alpha [Pyrococcus sp. ST04]) HSP 1 Score: 74.7146 bits (182), Expect = 4.460e-13 Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91 G RP+G+++L+AG+ ++ P +Y+TDPSG F WKA A+G G TAM + EEKY DM L D++KL++ +EN Sbjct: 129 GGVRPFGAALLMAGVNDK-------------PELYETDPSGAFFAWKAVAIGSGRNTAMAIFEEKYREDMTLEDSIKLAILALVKTMEN 204
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|1057205539|ref|WP_068578706.1| (proteasome endopeptidase complex, archaeal, alpha subunit [Thermococcus chitonophagus] >gi|1019365910|emb|CUX78573.1| Proteasome subunit alpha, archaeal [Thermococcus chitonophagus] >gi|1214560485|gb|ASJ16433.1| proteasome subunit alpha [Thermococcus chitonophagus]) HSP 1 Score: 74.7146 bits (182), Expect = 5.574e-13 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91 G RP+G+++L+AG+ + P +Y+TDPSG + WKA A+G G TAM + EEKY DM L DA+KL++ +EN Sbjct: 129 GGVRPFGAALLMAGVNDR-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMTLEDAIKLAILALAKTMEN 204
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|503513125|ref|WP_013747615.1| (proteasome endopeptidase complex,subunit alpha [Pyrococcus sp. NA2] >gi|331033245|gb|AEC51057.1| proteasome subunit alpha [Pyrococcus sp. NA2]) HSP 1 Score: 73.9442 bits (180), Expect = 8.397e-13 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0 Query: 3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSL 82 G RP+G+++L+AG+ E+ P +Y+TDPSG + WKA A+G G TAM + EEKY DM L DA+KL++ Sbjct: 129 GGVRPFGAALLMAGVNEK-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMTLEDAIKLAI 195
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|403372927|gb|EJY86375.1| (Proteasome subunit alpha type-5 (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 73.1738 bits (178), Expect = 1.638e-12 Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0 Query: 6 RPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLE 90 RPYG ++LIAG+ E P ++Y+TDPSGTF W+A A+G G ETAMT ++E + +M L +A KL L + ++E Sbjct: 138 RPYGVALLIAGVDERGP------------QLYQTDPSGTFLQWQARAIGSGGETAMTFIKESFHNNMTLAEAEKLVLQTLKNVME 210 The following BLAST results are available for this feature:
BLAST of EWM30373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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