EWM30373.1, cds281 (CDS) Nannochloropsis gaditana

Overview
NameEWM30373.1
Unique Namecds281
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:707393..707883 -
Alignment locationCM002455.1:707159..707198 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30373.1
Productproteasome subunit alpha
Orig transcript idgnl|cribi|Naga_100026g35.10627.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:707393..707883 -
CM002455.1supercontigCM002455.1:707159..707198 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|585113033|gb|EWM30373.1| (proteasome subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 355.91 bits (912), Expect = 3.400e-124
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 176
            MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK
Sbjct:    1 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 176          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|553181369|ref|XP_005853553.1| (proteasome subunit alpha [Nannochloropsis gaditana CCMP526] >gi|422295503|gb|EKU22802.1| proteasome subunit alpha [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.533 bits (924), Expect = 6.017e-124
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 176
            MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK
Sbjct:  141 MQGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLENGGVIGEEVNKGKEDKSEVERSQQGGSEETGAAREEKGDRARVGVDVALVSNEGVALWESISPMEEILELVNRSDANAAVASSKEK 316          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|499322225|ref|WP_011012717.1| (proteasome endopeptidase complex,subunit alpha [Pyrococcus furiosus] >gi|23821988|sp|Q8U0L6.1|PSA_PYRFU RecName: Full=Proteasome subunit alpha; AltName: Full=20S proteasome alpha subunit; AltName: Full=Proteasome core protein PsmA >gi|18893713|gb|AAL81695.1| proteasome, subunit alpha (multicatalytic endopeptidase complex alpha subunit) [Pyrococcus furiosus DSM 3638] >gi|393189655|gb|AFN04353.1| proteasome subunit alpha [Pyrococcus furiosus COM1])

HSP 1 Score: 77.0258 bits (188), Expect = 7.764e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91
            G  RP+G+++L+AG+ +              P +Y+TDPSG +  WKA A+G G  TAM + EEKY  DM+L DA+KL+L      +EN
Sbjct:  129 GGVRPFGAALLMAGINDR-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMEN 204          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|1101779791|gb|OIR58878.1| (20S proteasome component alpha 2, PSMA2 [Amphiamblys sp. WSBS2006])

HSP 1 Score: 76.2554 bits (186), Expect = 9.522e-14
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    2 QGRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCR 86
            +G  RP+G S+LIAG+  ET +P           +Y+ DPSG++T WKACA+G  +E   T+LE++  PDMD+ DA+ L++   +
Sbjct:  124 RGGVRPFGVSVLIAGIDCETKEPM----------LYQADPSGSYTPWKACALGNNSEKITTLLEKRLRPDMDIEDAVHLAIKALK 198          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|850928612|ref|WP_048058154.1| (proteasome subunit alpha [Pyrococcus yayanosii])

HSP 1 Score: 75.8702 bits (185), Expect = 1.713e-13
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    6 RPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91
            RP+G+++L+AG+ E+             P +Y+TDPSG +  WKA A+G G  TAM + EEKY  DM L DA+KL++      +EN
Sbjct:  132 RPFGAALLLAGVNEK-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMRLEDAIKLAIFALAKTMEN 204          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|334899805|gb|AEH24073.1| (proteasome subunit alpha [Pyrococcus yayanosii CH1])

HSP 1 Score: 75.8702 bits (185), Expect = 2.074e-13
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91
            G  RP+G+++L+AG+ E+             P +Y+TDPSG +  WKA A+G G  TAM + EEKY  DM L DA+KL++      +EN
Sbjct:  146 GGVRPFGAALLLAGVNEK-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMRLEDAIKLAIFALAKTMEN 221          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|504547439|ref|WP_014734541.1| (proteasome endopeptidase complex,subunit alpha [Pyrococcus sp. ST04] >gi|388250166|gb|AFK23019.1| proteasome subunit alpha [Pyrococcus sp. ST04])

HSP 1 Score: 74.7146 bits (182), Expect = 4.460e-13
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91
            G  RP+G+++L+AG+ ++             P +Y+TDPSG F  WKA A+G G  TAM + EEKY  DM L D++KL++      +EN
Sbjct:  129 GGVRPFGAALLMAGVNDK-------------PELYETDPSGAFFAWKAVAIGSGRNTAMAIFEEKYREDMTLEDSIKLAILALVKTMEN 204          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|1057205539|ref|WP_068578706.1| (proteasome endopeptidase complex, archaeal, alpha subunit [Thermococcus chitonophagus] >gi|1019365910|emb|CUX78573.1| Proteasome subunit alpha, archaeal [Thermococcus chitonophagus] >gi|1214560485|gb|ASJ16433.1| proteasome subunit alpha [Thermococcus chitonophagus])

HSP 1 Score: 74.7146 bits (182), Expect = 5.574e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLEN 91
            G  RP+G+++L+AG+ +              P +Y+TDPSG +  WKA A+G G  TAM + EEKY  DM L DA+KL++      +EN
Sbjct:  129 GGVRPFGAALLMAGVNDR-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMTLEDAIKLAILALAKTMEN 204          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|503513125|ref|WP_013747615.1| (proteasome endopeptidase complex,subunit alpha [Pyrococcus sp. NA2] >gi|331033245|gb|AEC51057.1| proteasome subunit alpha [Pyrococcus sp. NA2])

HSP 1 Score: 73.9442 bits (180), Expect = 8.397e-13
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0
Query:    3 GRRRPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSL 82
            G  RP+G+++L+AG+ E+             P +Y+TDPSG +  WKA A+G G  TAM + EEKY  DM L DA+KL++
Sbjct:  129 GGVRPFGAALLMAGVNEK-------------PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMTLEDAIKLAI 195          
BLAST of EWM30373.1 vs. NCBI_GenBank
Match: gi|403372927|gb|EJY86375.1| (Proteasome subunit alpha type-5 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 73.1738 bits (178), Expect = 1.638e-12
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    6 RPYGSSILIAGLLEETPDPATKSNKQLFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALLE 90
            RPYG ++LIAG+ E  P            ++Y+TDPSGTF  W+A A+G G ETAMT ++E +  +M L +A KL L   + ++E
Sbjct:  138 RPYGVALLIAGVDERGP------------QLYQTDPSGTFLQWQARAIGSGGETAMTFIKESFHNNMTLAEAEKLVLQTLKNVME 210          
The following BLAST results are available for this feature:
BLAST of EWM30373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113033|gb|EWM30373.1|3.400e-124100.00proteasome subunit alpha [Nannochloropsis gaditana... [more]
gi|553181369|ref|XP_005853553.1|6.017e-124100.00proteasome subunit alpha [Nannochloropsis gaditana... [more]
gi|499322225|ref|WP_011012717.1|7.764e-1441.57proteasome endopeptidase complex,subunit alpha [Py... [more]
gi|1101779791|gb|OIR58878.1|9.522e-1441.1820S proteasome component alpha 2, PSMA2 [Amphiambl... [more]
gi|850928612|ref|WP_048058154.1|1.713e-1341.86proteasome subunit alpha [Pyrococcus yayanosii][more]
gi|334899805|gb|AEH24073.1|2.074e-1341.57proteasome subunit alpha [Pyrococcus yayanosii CH1... [more]
gi|504547439|ref|WP_014734541.1|4.460e-1340.45proteasome endopeptidase complex,subunit alpha [Py... [more]
gi|1057205539|ref|WP_068578706.1|5.574e-1340.45proteasome endopeptidase complex, archaeal, alpha ... [more]
gi|503513125|ref|WP_013747615.1|8.397e-1343.75proteasome endopeptidase complex,subunit alpha [Py... [more]
gi|403372927|gb|EJY86375.1|1.638e-1242.35Proteasome subunit alpha type-5 (macronuclear) [Ox... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna281rna281Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications